mRNA_S-dermatodea_contig1275.1681.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1275.1681.1
Unique NamemRNA_S-dermatodea_contig1275.1681.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1275.1681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1275contigS-dermatodea_contig1275:12481..12879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size400
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924260.130488-CDS-S-dermatodea_contig1275:12480..128791622924260.130488-CDS-S-dermatodea_contig1275:12480..12879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1275 12481..12879 +
1694079132.2193818-CDS-S-dermatodea_contig1275:12480..128791694079132.2193818-CDS-S-dermatodea_contig1275:12480..12879Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1275 12481..12879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1275.1681.1prot_S-dermatodea_contig1275.1681.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1275 12481..12879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1275.1681.1

>prot_S-dermatodea_contig1275.1681.1 ID=prot_S-dermatodea_contig1275.1681.1|Name=mRNA_S-dermatodea_contig1275.1681.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MRGRRKRRPADGLVVFPLKIAATAAATTTFVAIIIASQESTALSLATPAR
TRTGNSDSTSSSTSSRCSNRKRTSTLFSQNRRPFPSATGLAAVGGPSPVS
LRNRRAGDVDAAPSLPSRRRASRPGTAAPGATT
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mRNA from alignment at S-dermatodea_contig1275:12481..12879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1275.1681.1 ID=mRNA_S-dermatodea_contig1275.1681.1|Name=mRNA_S-dermatodea_contig1275.1681.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at S-dermatodea_contig1275:12481..12879+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGGGCGACGGAAGCGACGACCGGCAGACGGTCTGGTGGTGTTTCC
TCTCAAGATTGCAGCAACGGCGGCAGCAACGACGACGTTTGTGGCGATCA
TCATCGCGTCCCAGGAGAGCACCGCTCTGTCTCTCGCGACGCCGGCCCGC
ACACGTACCGGCAATAGCGATAGCACCAGCAGCAGCACCAGCAGCAGATG
TAGCAATCGAAAGCGGACCAGCACACTCTTTTCGCAAAACAGGCGACCAT
TCCCGTCTGCCACTGGCCTCGCTGCTGTTGGCGGCCCCTCTCCGGTTTCG
CTACGCAACCGTCGTGCTGGTGATGTTGATGCTGCTCCGTCGCTCCCGAG
CAGGCGTCGGGCCTCGCGGCCAGGTACCGCCGCACCTGGTGCAACAACA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1275:12481..12879+

>mRNA_S-dermatodea_contig1275.1681.1 ID=mRNA_S-dermatodea_contig1275.1681.1|Name=mRNA_S-dermatodea_contig1275.1681.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig1275:12481..12879+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGGGCGACGGAAGCGACGACCGGCAGACGGTCTGGTGGTGTTTCC
TCTCAAGATTGCAGCAACGGCGGCAGCAACGACGACGTTTGTGGCGATCA
TCATCGCGTCCCAGGAGAGCACCGCTCTGTCTCTCGCGACGCCGGCCCGC
ACACGTACCGGCAATAGCGATAGCACCAGCAGCAGCACCAGCAGCAGATG
TAGCAATCGAAAGCGGACCAGCACACTCTTTTCGCAAAACAGGCGACCAT
TCCCGTCTGCCACTGGCCTCGCTGCTGTTGGCGGCCCCTCTCCGGTTTCG
CTACGCAACCGTCGTGCTGGTGATGTTGATGCTGCTCCGTCGCTCCCGAG
CAGGCGTCGGGCCTCGCGGCCAGGTACCGCCGCACCTGGTGCAACAACAA
TGAGGGGGCGACGGAAGCGACGACCGGCAGACGGTCTGGTGGTGTTTCCT
CTCAAGATTGCAGCAACGGCGGCAGCAACGACGACGTTTGTGGCGATCAT
CATCGCGTCCCAGGAGAGCACCGCTCTGTCTCTCGCGACGCCGGCCCGCA
CACGTACCGGCAATAGCGATAGCACCAGCAGCAGCACCAGCAGCAGATGT
AGCAATCGAAAGCGGACCAGCACACTCTTTTCGCAAAACAGGCGACCATT
CCCGTCTGCCACTGGCCTCGCTGCTGTTGGCGGCCCCTCTCCGGTTTCGC
TACGCAACCGTCGTGCTGGTGATGTTGATGCTGCTCCGTCGCTCCCGAGC
AGGCGTCGGGCCTCGCGGCCAGGTACCGCCGCACCTGGTGCAACAACA
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