prot_S-dermatodea_contig8667.16809.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8667.16809.1
Unique Nameprot_S-dermatodea_contig8667.16809.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length152
Homology
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BLAST of mRNA_S-dermatodea_contig8667.16809.1 vs. uniprot
Match: D7FXX5_ECTSI (RING Zn finger-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX5_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.770e-59
Identity = 92/99 (92.93%), Postives = 98/99 (98.99%), Query Frame = 0 
Query:   53 MSEPARRWSILRKNFRLAALRSIAQDKREALKKLQEVRKKADRAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDISDLVELQ 151
            +SEPARRW+ LR+NFRLAALRSIAQDKREALKKLQEVRK+AD+AQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDI+DLVELQ
Sbjct:   63 LSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ 161
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BLAST of mRNA_S-dermatodea_contig8667.16809.1 vs. uniprot
Match: A0A672MM86_SINGR (Ring finger protein 34 n=35 Tax=Cypriniformes TaxID=7952 RepID=A0A672MM86_SINGR)

HSP 1 Score: 54.3 bits (129), Expect = 1.020e-5
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 0 
Query:  101 SDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDISDLVEL 150
            +D   C+IC D   + V L+CGH   CT+CG CM+ CPIC Q +   V +
Sbjct:  312 NDDNLCRICMDAIIDCVLLECGHMVTCTKCGKCMSECPICRQYVIRAVHV 361
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8667.16809.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXX5_ECTSI1.770e-5992.93RING Zn finger-containing protein n=2 Tax=Ectocarp... [more]
A0A672MM86_SINGR1.020e-544.00Ring finger protein 34 n=35 Tax=Cypriniformes TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..99
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 103..146
e-value: 1.2E-8
score: 34.6
NoneNo IPR availablePANTHERPTHR14879CASPASE REGULATOR, RING FINGER DOMAIN-CONTAININGcoord: 41..149
NoneNo IPR availablePANTHERPTHR14879:SF5E3 UBIQUITIN-PROTEIN LIGASE CBLAcoord: 41..149
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 105..147
IPR017066E3 ubiquitin-protein ligase BOI-likePIRSFPIRSF036836SBP1_RNase_bindcoord: 26..148
e-value: 8.2E-9
score: 33.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 79..150
e-value: 3.8E-13
score: 50.6
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 127..138
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 106..140
score: 9.908

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8667contigS-dermatodea_contig8667:5125..8238 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8667.16809.1mRNA_S-dermatodea_contig8667.16809.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8667 5115..8913 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8667.16809.1 ID=prot_S-dermatodea_contig8667.16809.1|Name=mRNA_S-dermatodea_contig8667.16809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=152bp
MAPASDGATPSNPDPAAADALETIKREAHQQPWSLSSEGDHEAGDATEES
AGMSEPARRWSILRKNFRLAALRSIAQDKREALKKLQEVRKKADRAQEAQ
SDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDISDLVEL
Q*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017066E3ligase_BOI-like
IPR013083Znf_RING/FYVE/PHD
IPR0179004Fe4S_Fe_S_CS
IPR001841Znf_RING