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Homology
BLAST of mRNA_S-dermatodea_contig8667.16809.1 vs. uniprot
Match: D7FXX5_ECTSI (RING Zn finger-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX5_ECTSI) HSP 1 Score: 190 bits (482), Expect = 4.960e-56 Identity = 92/99 (92.93%), Postives = 98/99 (98.99%), Query Frame = 2
Query: 167 MSEPARRWSILRKNFRLAALRSIAQDKREALKKLQEVRKKADRAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDISDLVELQ 463
+SEPARRW+ LR+NFRLAALRSIAQDKREALKKLQEVRK+AD+AQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDI+DLVELQ
Sbjct: 63 LSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ 161
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 192.2 |
| Seed ortholog evalue | 1.8e-46 |
| Seed eggNOG ortholog | 2880.D7FXX5 |
| EggNOG free text desc. | Plus-3 domain |
| EggNOG OGs | 2A73H@1,2RYD8@2759 |
| Ec32 ortholog description | Zinc finger, RING/FYVE/PHD-type |
| Ec32 ortholog | Ec-16_005200.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1141 |
| Cds size | 456 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8667.16809.1 >prot_S-dermatodea_contig8667.16809.1 ID=prot_S-dermatodea_contig8667.16809.1|Name=mRNA_S-dermatodea_contig8667.16809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=152bp
MAPASDGATPSNPDPAAADALETIKREAHQQPWSLSSEGDHEAGDATEES
AGMSEPARRWSILRKNFRLAALRSIAQDKREALKKLQEVRKKADRAQEAQ
SDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDISDLVEL
Q* back to topmRNA from alignment at S-dermatodea_contig8667:5115..8913+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8667.16809.1 ID=mRNA_S-dermatodea_contig8667.16809.1|Name=mRNA_S-dermatodea_contig8667.16809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3799bp|location=Sequence derived from alignment at S-dermatodea_contig8667:5115..8913+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAAACCGATATGGCGCCGGCCTCCGACGGCGCCACGCCGAGCAATCCCG
ACCCTGCCGCTGCCGACGCACTGGAGACAATCAAACGCGAGGCACATCAA
CAACCTTGGAGTCTATCGAGCGAGGGCGACCATGAGGCAGGAGGTGCGGC
ACCGCCCTTACCCCCACGTACGGGATTGATCCCTGAGTGTCTGTTTTTGT
TCCGCCTGTACATGTTGTGGGCGATACTATCGCGCGGTTGGACCAACGGG
AGAAGGCTGTGTGAGGCTGATGACTGACATCATATCATACAATGACCCTC
AGAGTTAGCCTGAGATGCGGCGTAATTCGACGGTTCCGGGTCTAAATGTC
TGCATAGAGGCCCTCTATAGGCTACCGACAGCCATGATTGAGACTAGCGG
GCAGCCCCGTGATGTGTCCATTGGTAAGAAGTGGTGGCTACAGCCCATGG
AAAAACAGCAGAGGGGGGTGGGGTGGGTGGGGGAGGTACTAGTGCTAACG
TTTTAAACACATGGGGTATCCGAACGGACATAGACAACGCACCCCAACAA
TGCCGGTACGGAGCCGTATGCCGGGTTTTCGCCGGCCAGGCTGCGTTTCA
CACGGATGATACCAGCTGCTGGTCATGTTCATTGCGTTTGCGACGCCAAA
CCGCTCTGCCACGGATTGATTGGACATACCGGGCAACCAACTGTTGTTGC
ACATTCAATAGGCGCGACTGTACTCCAAGTGCCGCTAAGGAACCTTGATC
TCCGTGCGAAAGTACAAGCGCCGCGCGCACATAACATGCACGACGACAAG
TGGTTTGATCCACGGAGACTATACATACTCTGCACGTGAGTACTCCGCCA
GGCGAAGTACTAATCATAAGTCAGTGGTTGCTCCAGGGCAATCCAAAAAT
CCATCAACAGGTGTCCTAAAGGATATGACGCATTTCACCCCTTTGGCGGG
AGACAAGACTCTTCGACCGAGGTCTCTTGAGCTCACACGACACACGGCAT
GAACCACCCCATGCCCTATCAATGGCAGTTTAACAGCTCTATGCCACACT
ATTATAGCTGACTCTACCTCGACCAACCCCGCGTCGAACCTCAAAGGCAG
GAGGGTTATCGGCGTTCGTGTAACGGGGGACAGCAGGGGGAGGGGCGGGG
GAGGGTTGCTTCGATAGCTTTGAAAGACTTCTCTGAACCCCTGTGGCAAT
CGGCTTCAAAAGTCGTCTTGAGCAACGGCGTCAAAGGTGAACTCTAAATC
GCTATGAAAAAACTTCAAAGCGGTATTAATTAGCAACGATAACATATACC
CCAGGCGTCCCCGGAGCGTGCGTTTTCTCGCTGGCTGTGTGTGCATCAAT
TTGCCACACTAAAACGGATACCTTAACGCGTGCGCGTTCACATGGTACGG
GCACCCCCCAGTGCAGAGCTCTGCGCGTGCTGCCGCATCATACTGAACCC
TAACGGGTTACCGCTGCGCGTATGCTTGTATGGTGGCGCTTGTTGCGTGC
TCCCATCGGCTTACCGCGGCTTCTCAGATGCGACGGAGGAGTCGGCAGGC
ATGAGCGAGCCCGCCCGGCGATGGTCCATCCTACGAAAAAACTTCCGCCT
CGTGAGTGTGGACACCCGCCGCCGCAAGTGCGCTTCGAAAAGTAAAACAT
GCTGGATTGCGAGACACGTACGATAGGATGCATCGTCTTCGGAAGGACAG
TCAGCTGTCAAGTCACACGCCGTCGGTGTGGTGGTGTTGTTGTGAGTGGC
CGTACTGCGCACTGCCCGTGACCAAGGCGTGCATGCAAGCGACTGATGAT
GCCATCGGCTGTGCTGCCCCTGACGTGTGAAACAACGCTTGCTGTGTCGG
TCTTGATTAACCCCCAGGCGGCCCTTCGATCGATTGCGCAAGACAAGCGG
GAAGCCCTCAAGAAGCTGCAGGAGGTGCGCGTTACACACACGGAACCATC
TCTCGCCTTGAAGCTGACGGCAGGGGGATACCGTACATGTACACGTACAC
GTACACTTAGAAATTAACCGCCCGTTTCACGGCATCGTCGCATGAGCGGC
CCTTGCCTTCGCAATGTTGTGTTTTGTAGTATTAATAGTGGCAATGTCAA
GTATTCGATCTATAAATCAACTGCTATGTCCGCTTCACCCTATCAGGTCC
GAAAGAAAGCGGACAGAGCGCAGGAGGCGCAGAGCGACAGCCGCACTTGC
AAGATCTGCTGGGACAGGTGAGGCAATGCTGGGGGGAGCTTCGGTGTAGC
CAGGAGAGCCAGGGTACCATTCGAGTACATGTAGCTTGCGCTGGGAGCTT
CTCGTGACCCTAGGCTTCCGCTTCAACAAGAATACGCTGCTCGATGCTTA
TATACGGTGTGCTCCTGTGTGTTTAATATAGGAATAGTGCGCAAGAACGC
GGGCTCGTTCCTCGTGTAATGCCGGTTGATTTACATGCCCACACCGTGCG
ATTTTCGCAGTATCTTGCGTCCCGTGACTACAGTACGTACTCCCACCGTG
AAACGTGACACCTTGCGCAATTCGGAACGACTCTGCAATGCACATGCACA
CGGCGGCAGGGCAACGAACACCGTGTGCCTGGACTGCGGGCACCAGTGCA
TGTGCACCAGATGCGGGGCGTGCATGACCTTCTGCCCAATCTGTATGCAG
GTATGGAAGCCCCATTTGAATTGCGCTCTTCGCCTTATATACTGTTCATG
TGAAAAAAGAGAGCGGATCGCACAGCGATGCGTACGAGTTACGAGCTGCT
ATTGATGTACAAGATCCACTGAAAATAACTTGGGTGCGTCTCGCGTACGA
CTGCGGAGTGTACTACTATTTTGTTTTTGAGTTTTTCATTTTATTGTCAC
ACTTGCAACCGGCCGACCCACCAATGGTTGCCGATCCCGCTCGTGGTCAG
ATGAGAAATGGAGAGATGGAAAAAAAACTACAGAAAATGTGTAGTGGTAC
ACGATTGGCGATGGTGCTCTATACTCGACCCAACCGCGCCATAGCTAAAC
GTCACGTTACCCCATTTTTCCCCTGGACTAGGGGGACCTATCACACGGAA
AAATGCTGACGCTTCTGCCCCGTTATCATATCCGCACCTTCCAGGATATC
TCCGATCTGGTGGAATTGCAGTGAAACCAGAACGTCGGCGTCGAATGGCG
GCGTTAAGGTGCAAGACTTGTTCCGGAGGCACTTGGCCATGGCATGCATG
GGCAAGATGTCCTGCGCCTCGCACCCAGCTTCCTGCCTGTCGCACTCCAA
GGATGCCTTCTTTAGCCTCCTTGGAGTTATATAGAAGTCAATAGTTGGGC
GACCCCGTACTCTGGAATTTTTTTGTGGGGAACCTTCCGCGCTGTGACGT
GTTTAGCAGACGTTCTGCTGTGAGGATTCTCTTTCGGTGGTGTGTTTTGG
TTTCGGTGTCGTGATCGCGTCAGATTGCGTTAGACGTTGGTGTTCGTGAT
GAGTTTTGCTACTACCGCAGTAGTATTGGTACATCCGAGGATGTGCGAGT
GTCGATAGACTCAGGCGGTGAGAAGACGTCGCCGGACGGGCGACCCTCTT
GAGCCCTGTACAAGTACGGCGAATACAAATAAAGCCAACCTTTTTATGAC
ATGACTATTAGTGTGAACACGAGCGGGTGGGTAGCCACGGCTACCCTCGT
GAGGCGTACGTTGGTAGGGGAGCGGTGGCTGTATGGCCCATGAAAAAGCA
GCAGGGGGAAAAAACGTGTTCCAAAAGCTTCGACCCCCCCCCCCCCTATG
CAATTATTCCTATCAAAAATTAGACACAAGAGCTTACAATATCTGATTA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8667:5115..8913+ >mRNA_S-dermatodea_contig8667.16809.1 ID=mRNA_S-dermatodea_contig8667.16809.1|Name=mRNA_S-dermatodea_contig8667.16809.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at S-dermatodea_contig8667:5115..8913+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGCCGGCCTCCGACGGCGCCACGCCGAGCAATCCCGACCCTGCCGC
TGCCGACGCACTGGAGACAATCAAACGCGAGGCACATCAACAACCTTGGA
GTCTATCGAGCGAGGGCGACCATGAGGCAGGAGATGGCGCCGGCCTCCGA
CGGCGCCACGCCGAGCAATCCCGACCCTGCCGCTGCCGACGCACTGGAGA
CAATCAAACGCGAGGCACATCAACAACCTTGGAGTCTATCGAGCGAGGGC
GACCATGAGGCAGGAGATGCGACGGAGGAGTCGGCAGGCATGAGCGAGCC
CGCCCGGCGATGGTCCATCCTACGAAAAAACTTCCGCCTCATGCGACGGA
GGAGTCGGCAGGCATGAGCGAGCCCGCCCGGCGATGGTCCATCCTACGAA
AAAACTTCCGCCTCGCGGCCCTTCGATCGATTGCGCAAGACAAGCGGGAA
GCCCTCAAGAAGCTGCAGGAGGCGGCCCTTCGATCGATTGCGCAAGACAA
GCGGGAAGCCCTCAAGAAGCTGCAGGAGGTCCGAAAGAAAGCGGACAGAG
CGCAGGAGGCGCAGAGCGACAGCCGCACTTGCAAGATCTGCTGGGACAGG
TCCGAAAGAAAGCGGACAGAGCGCAGGAGGCGCAGAGCGACAGCCGCACT
TGCAAGATCTGCTGGGACAGGGCAACGAACACCGTGTGCCTGGACTGCGG
GCACCAGTGCATGTGCACCAGATGCGGGGCGTGCATGACCTTCTGCCCAA
TCTGTATGCAGGGCAACGAACACCGTGTGCCTGGACTGCGGGCACCAGTG
CATGTGCACCAGATGCGGGGCGTGCATGACCTTCTGCCCAATCTGTATGC
AGGATATCTCCGATCTGGTGGAATTGCAGTGAGATATCTCCGATCTGGTG
GAATTGCAGTGA back to top
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