mRNA_S-dermatodea_contig86653.16808.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86653.16808.1
Unique NamemRNA_S-dermatodea_contig86653.16808.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: A0A6H5KN57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN57_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.230e-14
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAKE 114
            +PAK+ASGA++NVPLFITTGEKIRVDT+SKKYMERAKE
Sbjct:  150 KPAKVASGAMINVPLFITTGEKIRVDTDSKKYMERAKE 187
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: D7FX61_ECTSI (Elongation factor P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX61_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.680e-12
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAKE 114
            +PAK+A+GAI+NVPLFITTGEKIRVD +SKKYMERAKE
Sbjct:  220 KPAKVAAGAIINVPLFITTGEKIRVDIDSKKYMERAKE 257
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: A0A2D8V6V2_9BACT (Elongation factor P n=4 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2D8V6V2_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 4.670e-8
Identity = 23/37 (62.16%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAK 111
            +PAKL++GA++NVPLF+  GE +RVDT+ KKY+ER K
Sbjct:  152 KPAKLSTGAVINVPLFVQEGEVVRVDTKEKKYIERVK 188
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: A0A3D1GCC9_9BACT (Elongation factor P n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GCC9_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 4.730e-8
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAK 111
            +PAKL SGA VNVPLFI  GEKIRVDT +  Y+ERAK
Sbjct:  153 KPAKLESGATVNVPLFINEGEKIRVDTRTGTYLERAK 189
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: L1J0T9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J0T9_GUITC)

HSP 1 Score: 54.7 bits (130), Expect = 6.620e-8
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAKE 114
            +PA L +GA+V VPLFI TGEK++VDT SKKY+ RA E
Sbjct:  152 KPATLETGAVVRVPLFIKTGEKVKVDTTSKKYLSRANE 189
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: A4BE54_9GAMM (Elongation factor P n=2 Tax=Reinekea TaxID=230494 RepID=A4BE54_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 6.700e-8
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAK 111
            +PAKL SGA+V VPLFI  GE IRVDT SK+Y+ RAK
Sbjct:  153 KPAKLVSGAVVKVPLFINEGEVIRVDTRSKEYLSRAK 189
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: A0A836CK22_9STRA (Elongation factor P (EF-P) KOW-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK22_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.260e-7
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAKE 114
            +PA L +G ++ VPLFI  GEKI+VDTE +KYMER+KE
Sbjct:  150 KPATLETGVVLQVPLFINEGEKIKVDTEERKYMERSKE 187
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: A0A0P1LDA7_9BACT (Elongation factor P n=5 Tax=Candidatus Kryptonia TaxID=1855361 RepID=A0A0P1LDA7_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.750e-7
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAK 111
            +PAKL +GA++NVPLFI  GEKIRVDT + +Y+ER K
Sbjct:  150 KPAKLETGAVINVPLFIEQGEKIRVDTRTGEYVERVK 186
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: A0A7C0ZFJ2_9BACT (Elongation factor P n=2 Tax=Bacteria TaxID=2 RepID=A0A7C0ZFJ2_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.770e-7
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAKE 114
            +PAKL +GA+V VPLF+ TGEKI++DT + +Y+ER KE
Sbjct:  150 KPAKLETGAVVTVPLFVETGEKIKIDTRTGEYIERVKE 187
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BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Match: A0A2D9FTK4_9BACT (Elongation factor P n=4 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FTK4_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.810e-7
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAK 111
            +PA L SGA VNVPLFI  GEKIRVDT + +Y+ERAK
Sbjct:  153 KPATLESGATVNVPLFINEGEKIRVDTRTGEYLERAK 189
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86653.16808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN57_9PHAE8.230e-1486.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX61_ECTSI1.680e-1284.21Elongation factor P n=1 Tax=Ectocarpus siliculosus... [more]
A0A2D8V6V2_9BACT4.670e-862.16Elongation factor P n=4 Tax=Candidatus Marinimicro... [more]
A0A3D1GCC9_9BACT4.730e-872.97Elongation factor P n=1 Tax=Balneolaceae bacterium... [more]
L1J0T9_GUITC6.620e-865.79Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A4BE54_9GAMM6.700e-870.27Elongation factor P n=2 Tax=Reinekea TaxID=230494 ... [more]
A0A836CK22_9STRA1.260e-763.16Elongation factor P (EF-P) KOW-like domain-contain... [more]
A0A0P1LDA7_9BACT1.750e-764.86Elongation factor P n=5 Tax=Candidatus Kryptonia T... [more]
A0A7C0ZFJ2_9BACT1.770e-760.53Elongation factor P n=2 Tax=Bacteria TaxID=2 RepID... [more]
A0A2D9FTK4_9BACT1.810e-770.27Elongation factor P n=4 Tax=Balneolaceae TaxID=181... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86653contigS-dermatodea_contig86653:433..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue5.8e-10
Seed eggNOG ortholog2880.D7FX61
KEGG koko:K02356
EggNOG free text desc.Elongation factor P, C-terminal
EggNOG OGs2QSVF@2759,COG0231@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.8553946-CDS-S-dermatodea_contig86653:432..5491622925357.8553946-CDS-S-dermatodea_contig86653:432..549Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86653 433..549 +
1694079878.9880855-CDS-S-dermatodea_contig86653:432..5491694079878.9880855-CDS-S-dermatodea_contig86653:432..549Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86653 433..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86653.16808.1prot_S-dermatodea_contig86653.16808.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86653 433..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86653.16808.1

>prot_S-dermatodea_contig86653.16808.1 ID=prot_S-dermatodea_contig86653.16808.1|Name=mRNA_S-dermatodea_contig86653.16808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=39bp
QPAKLASGAIVNVPLFITTGEKIRVDTESKKYMERAKE*
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mRNA from alignment at S-dermatodea_contig86653:433..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86653.16808.1 ID=mRNA_S-dermatodea_contig86653.16808.1|Name=mRNA_S-dermatodea_contig86653.16808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at S-dermatodea_contig86653:433..549+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCCGGCCAAGCTGGCGTCTGGAGCGATAGTAAACGTGCCTCTGTTCAT
CACGACGGGGGAGAAGATCAGGGTGGACACCGAAAGCAAGAAGTACATGG
AGCGCGCAAAAGAGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig86653:433..549+

>mRNA_S-dermatodea_contig86653.16808.1 ID=mRNA_S-dermatodea_contig86653.16808.1|Name=mRNA_S-dermatodea_contig86653.16808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at S-dermatodea_contig86653:433..549+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCCGGCCAAGCTGGCGTCTGGAGCGATAGTAAACGTGCCTCTGTTCAT
CACGACGGGGGAGAAGATCAGGGTGGACACCGAAAGCAAGAAGTACATGG
AGCGCGCAAAAGAGTAGCAGCCGGCCAAGCTGGCGTCTGGAGCGATAGTA
AACGTGCCTCTGTTCATCACGACGGGGGAGAAGATCAGGGTGGACACCGA
AAGCAAGAAGTACATGGAGCGCGCAAAAGAGTAG
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