mRNA_S-dermatodea_contig86590.16805.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86590.16805.1
Unique NamemRNA_S-dermatodea_contig86590.16805.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: D8LNT5_ECTSI (Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNT5_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.670e-20
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            SH  L+QILDLYEAGKKF+LYTGRGPSSDALHLGHLVPFHFTKYLQ
Sbjct:  269 SHRDLTQILDLYEAGKKFFLYTGRGPSSDALHLGHLVPFHFTKYLQ 314
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: A0A482RU04_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU04_9ARCH)

HSP 1 Score: 83.6 bits (205), Expect = 8.100e-19
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            SH  L Q+LDLYEAG+KFYLYTGRGPSS+ALHLGHL+PF FTK+LQ
Sbjct:  130 SHRDLHQLLDLYEAGQKFYLYTGRGPSSEALHLGHLIPFQFTKWLQ 175
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: A0A7S3YIG7_HETAK (Tryptophan--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIG7_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 2.500e-18
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            SH  L+Q+LDLYE G+KFYLYTGRGPSS+ALHLGHL+PFHFT+YLQ
Sbjct:   31 SHRDLTQLLDLYERGEKFYLYTGRGPSSEALHLGHLLPFHFTQYLQ 76
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: W7TK77_9STRA (Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK77_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.510e-18
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            SH  L+Q+LDLYE G KFYLYTGRGPSS++LHLGHL+PFHFT+YLQ
Sbjct:  274 SHRDLTQLLDLYEKGTKFYLYTGRGPSSESLHLGHLIPFHFTRYLQ 319
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: A0A4D9CRR7_9STRA (Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRR7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.550e-18
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            SH  L+Q+LDLYE G KFYLYTGRGPSS++LHLGHL+PFHFT+YLQ
Sbjct:  274 SHRDLTQLLDLYEKGTKFYLYTGRGPSSESLHLGHLIPFHFTRYLQ 319
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: A0A7S1XAY3_9RHOD (Tryptophan--tRNA ligase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XAY3_9RHOD)

HSP 1 Score: 83.6 bits (205), Expect = 1.220e-17
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            SH  L  +LDLYEAG+KFYLYTGRGPSS+ALHLGHL+PF FTKYLQ
Sbjct:   75 SHRDLEMVLDLYEAGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQ 120
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: H8ZX36_9EUKA (Tryptophanyl-tRNA synthetase (Fragment) n=1 Tax=Collodictyon triciliatum TaxID=190325 RepID=H8ZX36_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.920e-17
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            SH  +++ILDLYE GK FYLYTGRGPSS+++H GHL+PF FTKYLQ
Sbjct:    8 SHREMNRILDLYEKGKPFYLYTGRGPSSESMHFGHLIPFLFTKYLQ 53
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: A0A7S0XFQ6_9STRA (Tryptophan--tRNA ligase (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XFQ6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.030e-17
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            SH  L+Q+LDLYE+GKKFYLYTGRGPSS+ALHLGH+VPF FTK+LQ
Sbjct:  149 SHRDLNQLLDLYESGKKFYLYTGRGPSSEALHLGHMVPFLFTKWLQ 194
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: A0A453K2F4_AEGTS (Tryptophan--tRNA ligase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453K2F4_AEGTS)

HSP 1 Score: 80.9 bits (198), Expect = 2.230e-17
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            +H  L++ILD+YE G KFYLYTGRGPSS+ALHLGHLVPF FTKYLQ
Sbjct:   71 AHRDLNEILDIYEKGDKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ 116
[Close]
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Match: Q2QP61_ORYSJ (Tryptophan--tRNA ligase n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q2QP61_ORYSJ)

HSP 1 Score: 82.0 bits (201), Expect = 2.980e-17
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQ 138
            +H  L++ILDLYE G+KFYLYTGRGPSS+ALHLGHL+PF FTKYLQ
Sbjct:   78 AHRDLNEILDLYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQ 123
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86590.16805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNT5_ECTSI1.670e-2091.30Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A482RU04_9ARCH8.100e-1980.43Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3YIG7_HETAK2.500e-1880.43Tryptophan--tRNA ligase n=1 Tax=Heterosigma akashi... [more]
W7TK77_9STRA8.510e-1878.26Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CRR7_9STRA8.550e-1878.26Tryptophan--tRNA ligase n=1 Tax=Nannochloropsis sa... [more]
A0A7S1XAY3_9RHOD1.220e-1780.43Tryptophan--tRNA ligase n=1 Tax=Compsopogon caerul... [more]
H8ZX36_9EUKA1.920e-1771.74Tryptophanyl-tRNA synthetase (Fragment) n=1 Tax=Co... [more]
A0A7S0XFQ6_9STRA2.030e-1780.43Tryptophan--tRNA ligase (Fragment) n=1 Tax=Chromul... [more]
A0A453K2F4_AEGTS2.230e-1778.26Tryptophan--tRNA ligase n=1 Tax=Aegilops tauschii ... [more]
Q2QP61_ORYSJ2.980e-1778.26Tryptophan--tRNA ligase n=2 Tax=Oryza sativa subsp... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86590contigS-dermatodea_contig86590:110..259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue3.7e-17
Seed eggNOG ortholog2880.D8LNT5
KEGG rclassRC00055,RC00523
KEGG koko:K01867
KEGG ReactionR03664
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006469,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010835,GO:0016070,GO:0016874,GO:0016875,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022603,GO:0030234,GO:0031323,GO:0031324,GO:0031334,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032991,GO:0033673,GO:0034641,GO:0034645,GO:0034660,GO:0042127,GO:0042325,GO:0042326,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043436,GO:0043549,GO:0043603,GO:0043604,GO:0044087,GO:0044089,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0045859,GO:0045936,GO:0046483,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0090304,GO:0098772,GO:0140098,GO:0140101,GO:1901342,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:2000026
EggNOG free text desc.tryptophanyl-tRNA aminoacylation
EggNOG OGsCOG0180@1,KOG2145@2759
EC6.1.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.7485752-CDS-S-dermatodea_contig86590:109..2591622925357.7485752-CDS-S-dermatodea_contig86590:109..259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86590 110..259 +
1694079878.948573-CDS-S-dermatodea_contig86590:109..2591694079878.948573-CDS-S-dermatodea_contig86590:109..259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86590 110..259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86590.16805.1prot_S-dermatodea_contig86590.16805.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86590 110..259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86590.16805.1

>prot_S-dermatodea_contig86590.16805.1 ID=prot_S-dermatodea_contig86590.16805.1|Name=mRNA_S-dermatodea_contig86590.16805.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
SHLSLSQILDLYEAGKKFYLYTGRGPSSDALHLGHLVPFHFTKYLQVHY*
back to top

mRNA from alignment at S-dermatodea_contig86590:110..259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86590.16805.1 ID=mRNA_S-dermatodea_contig86590.16805.1|Name=mRNA_S-dermatodea_contig86590.16805.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig86590:110..259+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCATCTGTCTCTTTCGCAGATTCTGGATCTTTATGAGGCGGGGAAGAA
GTTTTACCTGTACACGGGTAGAGGGCCGTCCTCCGACGCCCTACACTTGG
GGCACCTCGTGCCCTTCCACTTCACCAAGTATCTGCAGGTACACTATTAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig86590:110..259+

>mRNA_S-dermatodea_contig86590.16805.1 ID=mRNA_S-dermatodea_contig86590.16805.1|Name=mRNA_S-dermatodea_contig86590.16805.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig86590:110..259+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCATCTGTCTCTTTCGCAGATTCTGGATCTTTATGAGGCGGGGAAGAA
GTTTTACCTGTACACGGGTAGAGGGCCGTCCTCCGACGCCCTACACTTGG
GGCACCTCGTGCCCTTCCACTTCACCAAGTATCTGCAGGTACACTATTAA
TCGCATCTGTCTCTTTCGCAGATTCTGGATCTTTATGAGGCGGGGAAGAA
GTTTTACCTGTACACGGGTAGAGGGCCGTCCTCCGACGCCCTACACTTGG
GGCACCTCGTGCCCTTCCACTTCACCAAGTATCTGCAGGTACACTATTAA
back to top