prot_S-dermatodea_contig8654.16804.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8654.16804.1
Unique Nameprot_S-dermatodea_contig8654.16804.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length138
Homology
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: UPI001E5A9FEC (tetratricopeptide repeat protein n=1 Tax=Planktothricoides sp. SR001 TaxID=1705388 RepID=UPI001E5A9FEC)

HSP 1 Score: 55.1 bits (131), Expect = 5.530e-7
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 0 
Query:    1 LRAIAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPL 41
            LRAIAI EK+L PDHPDLA  LSN A L  +QG+Y +A PL
Sbjct:    2 LRAIAIVEKSLPPDHPDLASSLSNLAALYESQGRYEEAEPL 42
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: UPI001E2DE804 (tetratricopeptide repeat protein n=1 Tax=Planktothricoides sp. SR001 TaxID=1705388 RepID=UPI001E2DE804)

HSP 1 Score: 56.2 bits (134), Expect = 6.600e-7
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:    1 LRAIAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPL 41
            LRAIAIDEK+L PDHPDLA  L+N A L  +QG+Y +A PL
Sbjct:    2 LRAIAIDEKSLPPDHPDLARHLNNLAGLYDSQGRYEEAEPL 42
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.240e-6
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 0 
Query:    1 LRAIAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAV 39
            LRAI I EK LGPDHPDLA RL+NRA LL AQG+ A  V
Sbjct:  262 LRAIEIGEKTLGPDHPDLATRLNNRAELLRAQGEGATEV 300
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: A0A1F2STV2_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 TaxID=1797178 RepID=A0A1F2STV2_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.540e-5
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0 
Query:    4 IAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPLNLR 44
            +AI EKALGP+HP++ + L+N A L  AQGKYADA PL  R
Sbjct:    1 MAIWEKALGPEHPNVGQSLNNLAGLYAAQGKYADAEPLYKR 41
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: A0A084Y082_9PROT (Photosystem I assembly protein Ycf3 n=1 Tax=Candidatus Accumulibacter sp. SK-01 TaxID=1457154 RepID=A0A084Y082_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 2.080e-5
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:    4 IAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPLNLR 44
            +AI EKALGP+HP +A  L+N A L +AQG+YADA PLN R
Sbjct:    1 MAIYEKALGPEHPYMATSLNNLAGLYNAQGRYADAEPLNRR 41
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001E5A9FEC5.530e-765.85tetratricopeptide repeat protein n=1 Tax=Planktoth... [more]
UPI001E2DE8046.600e-765.85tetratricopeptide repeat protein n=1 Tax=Planktoth... [more]
A0A6H5JUC1_9PHAE4.240e-671.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1F2STV2_9BACT1.540e-560.98Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A084Y082_9PROT2.080e-563.41Photosystem I assembly protein Ycf3 n=1 Tax=Candid... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002151Kinesin light chainPRINTSPR00381KINESINLIGHTcoord: 94..115
score: 36.82
coord: 15..32
score: 42.78
coord: 59..79
score: 62.86
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 61..94
e-value: 4.4
score: 16.3
coord: 103..136
e-value: 38.0
score: 9.9
coord: 19..52
e-value: 18.0
score: 12.7
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 61..94
score: 8.378
NoneNo IPR availablePFAMPF13424TPR_12coord: 2..51
e-value: 5.9E-9
score: 36.1
coord: 60..134
e-value: 1.8E-15
score: 57.0
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 3..83
NoneNo IPR availablePANTHERPTHR45783:SF7KINESIN LIGHT CHAIN 1coord: 50..136
coord: 3..83
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 50..136
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..138
e-value: 8.8E-45
score: 154.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 13..133
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..94
score: 9.16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8654contigS-dermatodea_contig8654:4642..5998 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8654.16804.1mRNA_S-dermatodea_contig8654.16804.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8654 4642..5998 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8654.16804.1 ID=prot_S-dermatodea_contig8654.16804.1|Name=mRNA_S-dermatodea_contig8654.16804.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp
LRAIAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPLNLRATEILE
KVYGPDHPAVAKALNNRAALWTPQGKYEEADPLFVRAIAIEEKALGPDHP
DLAMTLNGRATLLHAQGKYADAVLLNLRATEIWETVHG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002151Kinesin_light
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom