mRNA_S-dermatodea_contig8654.16804.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8654.16804.1
Unique NamemRNA_S-dermatodea_contig8654.16804.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: UPI001E5A9FEC (tetratricopeptide repeat protein n=1 Tax=Planktothricoides sp. SR001 TaxID=1705388 RepID=UPI001E5A9FEC)

HSP 1 Score: 55.1 bits (131), Expect = 5.530e-7
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LRAIAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPL 123
            LRAIAI EK+L PDHPDLA  LSN A L  +QG+Y +A PL
Sbjct:    2 LRAIAIVEKSLPPDHPDLASSLSNLAALYESQGRYEEAEPL 42
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: UPI001E2DE804 (tetratricopeptide repeat protein n=1 Tax=Planktothricoides sp. SR001 TaxID=1705388 RepID=UPI001E2DE804)

HSP 1 Score: 56.2 bits (134), Expect = 6.600e-7
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 LRAIAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPL 123
            LRAIAIDEK+L PDHPDLA  L+N A L  +QG+Y +A PL
Sbjct:    2 LRAIAIDEKSLPPDHPDLARHLNNLAGLYDSQGRYEEAEPL 42
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.240e-6
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 LRAIAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAV 117
            LRAI I EK LGPDHPDLA RL+NRA LL AQG+ A  V
Sbjct:  262 LRAIEIGEKTLGPDHPDLATRLNNRAELLRAQGEGATEV 300
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: A0A1F2STV2_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 TaxID=1797178 RepID=A0A1F2STV2_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 1.540e-5
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   10 IAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPLNLR 132
            +AI EKALGP+HP++ + L+N A L  AQGKYADA PL  R
Sbjct:    1 MAIWEKALGPEHPNVGQSLNNLAGLYAAQGKYADAEPLYKR 41
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BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Match: A0A084Y082_9PROT (Photosystem I assembly protein Ycf3 n=1 Tax=Candidatus Accumulibacter sp. SK-01 TaxID=1457154 RepID=A0A084Y082_9PROT)

HSP 1 Score: 53.1 bits (126), Expect = 2.080e-5
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   10 IAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPLNLR 132
            +AI EKALGP+HP +A  L+N A L +AQG+YADA PLN R
Sbjct:    1 MAIYEKALGPEHPYMATSLNNLAGLYNAQGRYADAEPLNRR 41
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8654.16804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001E5A9FEC5.530e-765.85tetratricopeptide repeat protein n=1 Tax=Planktoth... [more]
UPI001E2DE8046.600e-765.85tetratricopeptide repeat protein n=1 Tax=Planktoth... [more]
A0A6H5JUC1_9PHAE4.240e-671.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1F2STV2_9BACT1.540e-560.98Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A084Y082_9PROT2.080e-563.41Photosystem I assembly protein Ycf3 n=1 Tax=Candid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8654contigS-dermatodea_contig8654:4642..5998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size414
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8654.16804.1prot_S-dermatodea_contig8654.16804.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8654 4642..5998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.681876-CDS-S-dermatodea_contig8654:4641..47071622925357.681876-CDS-S-dermatodea_contig8654:4641..4707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8654 4642..4707 -
1694079878.8990216-CDS-S-dermatodea_contig8654:4641..47071694079878.8990216-CDS-S-dermatodea_contig8654:4641..4707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8654 4642..4707 -
1622925357.6932034-CDS-S-dermatodea_contig8654:4988..51141622925357.6932034-CDS-S-dermatodea_contig8654:4988..5114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8654 4989..5114 -
1694079878.9116693-CDS-S-dermatodea_contig8654:4988..51141694079878.9116693-CDS-S-dermatodea_contig8654:4988..5114Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8654 4989..5114 -
1622925357.7078435-CDS-S-dermatodea_contig8654:5218..53441622925357.7078435-CDS-S-dermatodea_contig8654:5218..5344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8654 5219..5344 -
1694079878.9262218-CDS-S-dermatodea_contig8654:5218..53441694079878.9262218-CDS-S-dermatodea_contig8654:5218..5344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8654 5219..5344 -
1622925357.7184546-CDS-S-dermatodea_contig8654:5902..59981622925357.7184546-CDS-S-dermatodea_contig8654:5902..5998Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8654 5903..5998 -
1694079878.9373698-CDS-S-dermatodea_contig8654:5902..59981694079878.9373698-CDS-S-dermatodea_contig8654:5902..5998Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8654 5903..5998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8654.16804.1

>prot_S-dermatodea_contig8654.16804.1 ID=prot_S-dermatodea_contig8654.16804.1|Name=mRNA_S-dermatodea_contig8654.16804.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp
LRAIAIDEKALGPDHPDLAERLSNRAVLLHAQGKYADAVPLNLRATEILE
KVYGPDHPAVAKALNNRAALWTPQGKYEEADPLFVRAIAIEEKALGPDHP
DLAMTLNGRATLLHAQGKYADAVLLNLRATEIWETVHG
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mRNA from alignment at S-dermatodea_contig8654:4642..5998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8654.16804.1 ID=mRNA_S-dermatodea_contig8654.16804.1|Name=mRNA_S-dermatodea_contig8654.16804.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1357bp|location=Sequence derived from alignment at S-dermatodea_contig8654:4642..5998- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCGAGCCATCGCGATAGACGAGAAGGCCCTCGGTCCTGATCACCCAGA
CCTGGCTGAGAGGCTCAGCAATAGGGCGGTATTGTTGCACGCTCAGGTGA
GAGCCGTCAACAGTTTGCGGATAAAATAATGTGGTGCCCAGCTAATGTTG
TAGTATTCAGAACCAGAGTTGTTGCGCGAGAGCCAAATAATAATTGTGAG
AAGTATGTCGAGGTTCCCTATCCATGTTGTAGAGTTCAACAGCCGGGCGG
TCGGGGTTGGTGAAGTAGCAGGTGAGAGCACCAGGTATTTCCTAGGGTAT
TTCTGGTGATGCCTTCTGTCTTAGTGCTCGACATCACGCGGGGTTCTTGG
GGAATCAGGTGACAAGTTTCCGGAACATTTCTTGTGGTCCAAATTTTGTC
TTGACATATTTTCTATTGTTGAGCATCCAGCGCTTTTATGGCTTACACTA
TCCAACTCTTGCTACATAGGGAAAGTATGCTGAGGCCGAGCCACTCTATA
GGCGGTCGCAGGCCATACGAGACAAAGTCCTGGGTTCGGAGCATCCCGAT
TTCGCCACAACGCTCAAGGGGCTATTGATACATTGTAAACAGTTCGTTGA
CCTCTGGGCCTCATACTGGAGCTTGCACCCCGTCACTTGTTCCTCACGTT
TCAGGGCAAATACGCGGACGCAGTCCCGCTCAATCTGCGGGCCACGGAAA
TTTTGGAGAAGGTTTATGGCCCGGATCACCCGGCAGTGGCTAAAGCACTC
AACAACCGGGCGGCATTGTGGACGCCACAGGTGACCGACGTCAGATTATA
ACATTAATAGTGTTTTGTGAGGAAATATGTTCTACTCCTTTTCTGAAGAA
TGCACTGATACTTGCGCGCTTTGTTCGATGGCAGGGGAAGTATGAGGAGG
CTGACCCTCTATTTGTGCGAGCCATTGCTATAGAGGAGAAGGCCCTCGGC
CCTGATCACCCAGATCTAGCCATGACACTTAACGGCCGGGCCACATTGCT
ACATGCTCAGGTGAGATTATCAGCGTTTTCTGGGATATATTTTGTGGTGC
CCCGCTAATGTTGTAGTACTCAGCCACCGGGGTTATTGCGCGACCAAGTG
AGAGCCGAAACAAAATTCTTGGAAATATGTTTGGGTTCCCTGCCCATGTT
GTAGAGCTCAACCGCCGGGCGGCCAGGGTTCTTGAAGAGGCAGGTGAGCG
CTGACTGGGTTGTCGAGACAGTGTACACCGTTTGTTGACCTCTGGGGCTC
ATACTGAAGCTTGTACCCCTCACGTGTTCCTCACGTTACAGGGCAAATAC
GCGGACGCTGTCCTGCTCAATCTGCGGGCCACGGAGATTTGGGAAACGGT
TCACGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8654:4642..5998-

>mRNA_S-dermatodea_contig8654.16804.1 ID=mRNA_S-dermatodea_contig8654.16804.1|Name=mRNA_S-dermatodea_contig8654.16804.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at S-dermatodea_contig8654:4642..5998- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCGAGCCATCGCGATAGACGAGAAGGCCCTCGGTCCTGATCACCCAGA
CCTGGCTGAGAGGCTCAGCAATAGGGCGGTATTGTTGCACGCTCAGCTGC
GAGCCATCGCGATAGACGAGAAGGCCCTCGGTCCTGATCACCCAGACCTG
GCTGAGAGGCTCAGCAATAGGGCGGTATTGTTGCACGCTCAGGGCAAATA
CGCGGACGCAGTCCCGCTCAATCTGCGGGCCACGGAAATTTTGGAGAAGG
TTTATGGCCCGGATCACCCGGCAGTGGCTAAAGCACTCAACAACCGGGCG
GCATTGTGGACGCCACAGGGCAAATACGCGGACGCAGTCCCGCTCAATCT
GCGGGCCACGGAAATTTTGGAGAAGGTTTATGGCCCGGATCACCCGGCAG
TGGCTAAAGCACTCAACAACCGGGCGGCATTGTGGACGCCACAGGGGAAG
TATGAGGAGGCTGACCCTCTATTTGTGCGAGCCATTGCTATAGAGGAGAA
GGCCCTCGGCCCTGATCACCCAGATCTAGCCATGACACTTAACGGCCGGG
CCACATTGCTACATGCTCAGGGGAAGTATGAGGAGGCTGACCCTCTATTT
GTGCGAGCCATTGCTATAGAGGAGAAGGCCCTCGGCCCTGATCACCCAGA
TCTAGCCATGACACTTAACGGCCGGGCCACATTGCTACATGCTCAGGGCA
AATACGCGGACGCTGTCCTGCTCAATCTGCGGGCCACGGAGATTTGGGAA
ACGGTTCACGGCGGCAAATACGCGGACGCTGTCCTGCTCAATCTGCGGGC
CACGGAGATTTGGGAAACGGTTCACGGC
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