mRNA_S-dermatodea_contig8652.16803.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8652.16803.1
Unique NamemRNA_S-dermatodea_contig8652.16803.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: A0A6H5JV52_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV52_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.660e-47
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:  214 PAPGTGATVLEDALAALFGGEAVAGVKGRKNREVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEVPKKIMSPSLLHEASKRGPLKYRLFTV 528
            PAPG G TVLE AL+ALFGGEAVAGVKG++N EV ASRTLTLE+APKVLTLHLKQFSFHP+LGPRKLARRVRYPLEL VP  +MSPSL HEAS RGPLKYRLFTV
Sbjct:  591 PAPGAGVTVLEAALSALFGGEAVAGVKGKRNLEVKASRTLTLEQAPKVLTLHLKQFSFHPELGPRKLARRVRYPLELTVPTLVMSPSLRHEASIRGPLKYRLFTV 695
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: D7FJX3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX3_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 4.220e-47
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:  214 PAPGTGATVLEDALAALFGGEAVAGVKGRKNREVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEVPKKIMSPSLLHEASKRGPLKYRLFTV 528
            PAPG G TVLE AL+ALFGGEAVAGVKG++N EV ASRTLTLE+APKVLTLHLKQFSFHP+LGPRKLARRVRYPLEL VP  +MSPSL HEAS +GPLKYRLFTV
Sbjct:  612 PAPGAGVTVLESALSALFGGEAVAGVKGKRNLEVKASRTLTLEQAPKVLTLHLKQFSFHPELGPRKLARRVRYPLELTVPTLVMSPSLRHEASIKGPLKYRLFTV 716
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: A0A8B7QGY6_HIPAR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7QGY6_HIPAR)

HSP 1 Score: 69.7 bits (169), Expect = 9.610e-11
Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:  241 LEDALAALFGGEAVAGVKGRKNREVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEVPKKIMSPSLLHEASKRGPLKYRLFTV 528
            ++DAL +L   E+V G   +  +EV  SR +TLE+ P VL +HLK+F +    G +KL + V YP++LE+ K+++SPS+ ++  K     YRLF V
Sbjct:  319 VQDALESLVARESVQGYTTKTKQEVEISRRVTLEKLPPVLVMHLKRFVYEKTGGCQKLIKNVEYPVDLEISKELLSPSVKNKNFKCHRT-YRLFAV 413
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: A0A084G026_PSEDA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseudallescheria apiosperma TaxID=563466 RepID=A0A084G026_PSEDA)

HSP 1 Score: 61.6 bits (148), Expect = 6.870e-8
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:  247 DALAALFGGEAVAG-VKGRKNREVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEVPKKIMSPSLLHEASKRGPLKYRLFTV 528
            DAL  L   E + G     + + V AS+ + ++  P VL LHLK+F F    G  K+A++V YPLEL++P++++S   +     + P KYRLF V
Sbjct:  708 DALKGLTSQEKLHGDFNSLRGKNVEASKQVLIDELPPVLILHLKRFQFDAAGGTLKIAKKVGYPLELDIPREVLSRQKVASLGNKMP-KYRLFAV 801
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: A0A024UE64_9STRA (USP domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE64_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.870e-8
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:  310 EVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEVPKKIMSPSLLHEASKRGPLKYRLFTV 528
            E S  +  T E  P VLTLH+K+F++    GP KL   V+YP+EL++P  + SP+LLHE +KR    Y+LF+V
Sbjct:  304 EPSTLKRTTFETLPVVLTLHVKRFTYDAVQGPLKLDTVVQYPVELDLPPSLFSPTLLHE-TKRAT--YKLFSV 373
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: T2MDN1_HYDVU (Ubiquitinyl hydrolase 1 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2MDN1_HYDVU)

HSP 1 Score: 60.8 bits (146), Expect = 1.160e-7
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:  241 LEDALAALFGGEAVAGVKGRK-NREVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEVPKKIMSPSLLHEASKRGPLKYRLFTV 528
            LE A+ + F  E + G    K N EV ASR L++E  P VL  HLK F +    G +K+ + +  P++LE+PK ++SPSL    ++R   +YRL+ V
Sbjct:  409 LEKAIESYFVKEILQGFTCSKTNTEVEASRKLSIEELPLVLIFHLKYFVYDRTGGSQKIYKAIDIPVDLEIPKDVLSPSLKVSLNER---QYRLYAV 502
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: S3CXQ7_OPHP1 (Ubiquitinyl hydrolase 1 n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3CXQ7_OPHP1)

HSP 1 Score: 60.8 bits (146), Expect = 1.280e-7
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:  247 DALAALFGGEAVAGVKGRKNREVSASRTLTLERAPKVLTLHLKQFSFHPDLGP-RKLARRVRYPLELEVPKKIMSPSLLHEASKRGPL-KYRLFTV 528
            DAL  L   E V  ++  K  EV+AS+ L ++  P VL LHLK+F F   LG  +K++++V YPLEL++P++++S      A +  PL KYRL  V
Sbjct:  806 DALRGLTVPEVVR-LESPKGGEVTASKRLHIQTLPPVLILHLKRFQFDSSLGSVKKISKKVGYPLELDIPRELLSHGNKRGAQQPEPLPKYRLNAV 900
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: UPI0018D85D83 (ubiquitin carboxyl-terminal hydrolase 10-A-like isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D85D83)

HSP 1 Score: 59.3 bits (142), Expect = 4.340e-7
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:  241 LEDALAALFGGEAVAGVKGRKNR-EVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEVPKKIMSPSLLHEASKRGPLKYRLFTV 528
            + DA+  L   EA+ G    K + EV ASR +TLE  P VLTLHLK+F +    G +K+ +++ Y +ELE+ + ++SP++  +A       Y+LF V
Sbjct:  856 VSDAINNLGSREALHGFTCNKTKQEVEASRRITLEELPPVLTLHLKRFVYDKSGGCQKVMKKLEYGVELEINRDLLSPNIKSKALY-AQRSYKLFAV 951
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: K3XBS3_GLOUD (USP domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBS3_GLOUD)

HSP 1 Score: 58.5 bits (140), Expect = 7.590e-7
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  304 NREVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEVPKKIMSPSLLHE-ASKRGP 504
            NR  +  R  T+E  P VLTL++K+F++HP+LGP KL + V+YP     P  +MSP+   E AS   P
Sbjct:  505 NRNPTMKRFTTMESLPVVLTLNIKRFTYHPELGPVKLPQFVKYPTRFAFPVDVMSPTCRAENASSNSP 572
[Close]
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Match: A0A8B7XVQ3_ACAPL (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XVQ3_ACAPL)

HSP 1 Score: 58.5 bits (140), Expect = 7.960e-7
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:  241 LEDALAALFGGEAVAGVKGRKNR-EVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEVPKKIMSPSLLHEASKRGPLKYRLFTV 528
            + DA+  L   EA+ G    K + EV ASR +TLE  P VLTLHLK+F +    G +K+ +++ Y +ELE+ ++++SP++  +        Y+LF V
Sbjct:  839 VSDAIENLASREALHGFTCNKTKQEVEASRRITLEELPPVLTLHLKRFVYDKSGGCQKVMKKLEYGVELEINRELLSPNIRSKVVF-AQRTYKLFAV 934
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8652.16803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JV52_9PHAE2.660e-4784.76USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJX3_ECTSI4.220e-4783.81USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8B7QGY6_HIPAR9.610e-1140.63Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hipp... [more]
A0A084G026_PSEDA6.870e-837.89Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pseu... [more]
A0A024UE64_9STRA7.870e-846.58USP domain-containing protein n=2 Tax=Aphanomyces ... [more]
T2MDN1_HYDVU1.160e-739.18Ubiquitinyl hydrolase 1 n=2 Tax=Hydra vulgaris Tax... [more]
S3CXQ7_OPHP11.280e-741.67Ubiquitinyl hydrolase 1 n=1 Tax=Ophiostoma piceae ... [more]
UPI0018D85D834.340e-738.14ubiquitin carboxyl-terminal hydrolase 10-A-like is... [more]
K3XBS3_GLOUD7.590e-744.12USP domain-containing protein n=1 Tax=Globisporang... [more]
A0A8B7XVQ3_ACAPL7.960e-737.11Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8652contigS-dermatodea_contig8652:1731..8933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue7.6e-41
Seed eggNOG ortholog2880.D7FJX3
Preferred nameUBP24
KEGG koko:K11841
KEGG Pathwayko04139,map04139
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016579,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0070646,GO:0070647,GO:0071704,GO:1901564
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1871@1,KOG1871@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size528
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8652.16803.1prot_S-dermatodea_contig8652.16803.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8652 1731..8933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.623519-CDS-S-dermatodea_contig8652:1730..20421622925357.623519-CDS-S-dermatodea_contig8652:1730..2042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8652 1731..2042 +
1694079878.8572187-CDS-S-dermatodea_contig8652:1730..20421694079878.8572187-CDS-S-dermatodea_contig8652:1730..2042Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8652 1731..2042 +
1622925357.6331336-CDS-S-dermatodea_contig8652:3761..38771622925357.6331336-CDS-S-dermatodea_contig8652:3761..3877Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8652 3762..3877 +
1694079878.8711722-CDS-S-dermatodea_contig8652:3761..38771694079878.8711722-CDS-S-dermatodea_contig8652:3761..3877Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8652 3762..3877 +
1622925357.6453571-CDS-S-dermatodea_contig8652:8833..89331622925357.6453571-CDS-S-dermatodea_contig8652:8833..8933Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8652 8834..8933 +
1694079878.8854337-CDS-S-dermatodea_contig8652:8833..89331694079878.8854337-CDS-S-dermatodea_contig8652:8833..8933Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8652 8834..8933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8652.16803.1

>prot_S-dermatodea_contig8652.16803.1 ID=prot_S-dermatodea_contig8652.16803.1|Name=mRNA_S-dermatodea_contig8652.16803.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=176bp
LDLDPPASSQPNNNPNSNFTEGASSGGPWGTTNGSGSETANGAPGSGGRS
GPWGSSGGGRGGGAWGGAGMAPAPGTGATVLEDALAALFGGEAVAGVKGR
KNREVSASRTLTLERAPKVLTLHLKQFSFHPDLGPRKLARRVRYPLELEV
PKKIMSPSLLHEASKRGPLKYRLFTV
back to top

mRNA from alignment at S-dermatodea_contig8652:1731..8933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8652.16803.1 ID=mRNA_S-dermatodea_contig8652.16803.1|Name=mRNA_S-dermatodea_contig8652.16803.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7203bp|location=Sequence derived from alignment at S-dermatodea_contig8652:1731..8933+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCGACCTAGATCCGCCAGCGTCCTCCCAACCAAACAACAACCCTAACTC
TAACTTCACGGAGGGGGCATCGTCGGGGGGCCCTTGGGGAACCACAAACG
GCTCTGGCTCCGAAACAGCTAACGGGGCGCCAGGCAGTGGAGGGAGGAGC
GGTCCTTGGGGTTCATCGGGCGGGGGGAGAGGGGGGGGGGCGTGGGGCGG
GGCAGGGATGGCGCCGGCGCCGGGCACGGGAGCCACGGTTTTGGAGGATG
CTCTCGCGGCGTTGTTCGGGGGGGAGGCTGTGGCCGGTGTGAAGGGAAGG
AAGAACAGAGAGGTATGATGGTGATGATGATGCGTCTGAACGTGTTGGCA
GGAAAGTGTGAGCCTTAACCTTGGGTTTCCGTTAACCTTGAGGTTGTTGG
TTGCAGGTGTGATGGGAGCGAGGTTTAAATTGTCTTCTAGTTGCTCTCGT
TTTAGTTGCCTCCGAGGCCGAACGAAGTGAAAGTGAGCTCGTCTTGTGCC
CTCACACTCGCCACACAAACAGCTGTTTTTTGTTTTTTCGACCAACTACT
GTAGCACCTTTAGATCCCCAATCTTTGACGAGTCACGTGCAGCCAGTGTG
CGTTCTCACGCACATACACGCTTACTCACACAGTGCACGCACTTAACGTA
AGGCCAAATGTTCGCTATCCCACGATACATAATCGCTGACCCACGCTTCT
CATCTACTTCAAGCGTGGTGTTTATTCCCTGCCCTTACGTTTGCGCACCA
CAATGTAACGCTTTGGAACCACTACCGCTTCTTTTCACTTGGAAACCCCG
ATCTCACGACTGTGTTTTTATGGTTTTGATGGATTCGTATGTGGCGTTTT
TTTGGGGTGGGGGAGAGGGAGGGGGGTGTACTTATGTTAAACGCATGTCG
TGTCCGAACGGACATAGACCACGCGTCCCAGCATATTGCCGGGACGAAGC
GGCAATATTTTCGCCGGCCAGGCTGCGTTTCACAAGGGTGATACCAGCTG
CTGGTCATCATTCTTGCGTTTGCGACGCCAAACGATAGGCCATGGGTTGA
GTGGACATACCGGACAACCAAATGTTGAAAGAACATTCAGTAGGCGTGAC
TATACTCCAAGTACCGCAAAGGGACTTTGATCACAGTGCGAACGCAAAAG
CGCCGCACGCACATAATACTAGTATACACGACGGTACATGTGTGATACAC
TCGGACTATATCCTGCTCATGAGTACTCCTGGCGGAGTACCACTCATAAG
TCAATGGTTGCTCTAGGGCGTTCCAACAATCCAATGTTCAGCAGGTGTCC
TATTGGATGTGATGTGATGCGTTTCACCCCTTTGGGGAGAGACAAAACTC
TTCGACCGAGGTCTCCGAGCTCACAGGACATGCTGCATGAACCACGCCAT
GTCCGTTAAATAGCAGTTTTACAGCTCCATGCCACAGGAGCCAACCCTAC
CTCGACCAACCCCACCTCGAACCTCAAAGGCAGGGGGGTTGCATGTCGGG
GGGTTTTCGATTTTGTATGTATCCGAAGGTGTCCAAGGCTGATTACGCAG
ACAGGGGTGGATATCCTCGCACTCTGTGGAGTTCCCCTCTGCCCGTGTGG
TATATCGGGTGCTAGGAAATGGCGTGCACGTTACTGTCGTCCGCATGTGT
TTTGGGATGTACAGTAAATGTGTTGGGTCATGACGGTGATGTTGGCGATG
ACCCACGGTAATTTTATTTATAATTATAATGGTGACGATGACGCCGATGC
TCATGACGATGACACTGATGATAATGACGATTGTGATAGAAACGCAGCCT
GGCCGGCGAACCACAAAACCCTACGGCATGTTGCTCCGTCCCGGCATTGT
TGGGACGCGTGGTCTATGTCCGTATGCATATTATACGACATGCGTTTAAC
ATAAGTACGCCACCTACCCCCCCCTCCCCCCGTCCCCTCGGGAGGCTGCT
GTCCTGGTCTAACAGCTAAGGCATGCAAAACATGAGTCCCCCCCCCCCCT
CTACCGTGCACGCCTCGCTGTATTTTGAAAGGTGTCTGCCTCGCGAACCC
TGACGCTGGAACGAGCGCCAAAAGTGCTTACGCTGCACCTCAAGCAATTC
TCCTTCCACCCCGATCTTGGCCCTCGGAAGCTCGCGCGCCGTGTCAGGTA
ACCTTTGAGTGTGTCCGTGGCAACTGCACAGAGCGGGTATTTAGGGAGGT
TCACAGTTAGGGGTCGGAATGGAGGGGGGGGGGGCGACTAGAGCCAGTTT
AAGCCGAAATATGTCAGCCCAGAAAAAAAACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACTATATATGCTG
CTGTCTGTTGGTACGTACTGGCCACCCACCACAGCACAAAAGACTGACAT
ATATATCGCATGAAATCATGAAACTTTGTTAACGATATGTTTTAATGAAT
TAGTGTATCTCGTGTTATTAGAGTGGCAGGGCATCGCAGCACGAGCAACT
TTGCGCGGCAAGCTGTTGCAAAAGGTGACCGATGCGCGGCTCTCATAACG
CTGGCTGGCGCAACGCGCGGTCTCTCTAGTACAGTATAGCACTCCACGGC
CGTGATGCTTCCTCTCTCGACGACGTTGGGGTGCGCAGCCCGCATTCGCA
CCTACCTCTGCCTTGGTCGTGCTTTGCCTGTATACTATTATTATTATATA
TATTGTGGATACGTGTCATACGTGTCATACGTGTCTCCAGGCGGACAGCA
GGGTCCGTGGGGCGAAGTCCCGAGGCGTGGTTTCTTTCTTTGGTCTTGGT
AGCGAGGAGACTAATACATTGTAATAAATATTCTATTATATAGTAGTTAA
TAGACTCGCTGGGTTTGGTTGGTCTTGTAGTCCGTGAGGTGGACCAAGCC
TTGATGCTCCGTTCTTATCCTGGTCCCGTCGGTAGTTGAAGCTCCTACCG
TCGGTAGTGGAAACCCCCAGGATGGATGTGTCGAATGGGGACACACATGG
GTCTAAGAAACGTGCTCTCCACATATACTTGTAATACTGCACGTACCTGT
ATGGCCCTTTTGGAGCACTCTTTTTTTTCCGACGACCTGGGGAATCGTAC
AAGTATACTGCTGTACAGTATATATACAGCAGCAGCAGCAGTCTCGGCCG
ATTTTTTCGTTAATTTTCCAGCTGTTTTTAGGATCTTCAATCTCCAACTG
GTCATTTTTGTGTCCACGAGCGCTCGACAGCCGTGAGGTGGATTGGGACG
GGGGTTTTCTGCGCTGACGCTGAGTCCCTCCCTTACAACCCAAGCTATCA
AAAACCCTGAGAACCAATTTTTGATCCTGTGGTGATTTGATTTAGAGTCG
CAGAGGAACAAAAGCCGCCCTGAAAATGCGTTATTTTTTTGGTGGTTTTC
GCTAAATATTTCGTTCCGAAAGGTGGAATCATCAAATGTTTTTACTGTGT
CACTGTTTGATAGATTTGACCTATATGTGCAGGTCCATGCAGAACCGCAG
GGGCCAAATCATCGTCTTGTGTCGCGGGAAACTCGATACAAATTCGGGAC
GCGACGCTCTGTAAGTCGATTCTGAAGTAAGTTGAACATAGTTTGCTAAA
AAACATGCCACTTGTTATTTATTGGCAATGTCATACGCCCTTTTTTCGAA
CAGCTCGGGACAAGAAATTGTGGTCGTTATGCCCTCCATTCCGACCCCTA
TTAATAGTATTAATAACAGTAATGAGGACCAAGTGCCCAAAAACGTGTAT
TATACCGGTAGCCAAGATGATAAACGAAGAATTAGTATGGTCTGGCCTTA
CTCCAGGACTGCTGTACTTGTACAACATCTTCAATATTTCGGCCTGAAAA
TTAAAAAAAAAAAAAGGAAAAATAGTACTTCGTACAAGGTTTTTGGCGCA
GCGTTTGAAGGCAAGAGTGGAATACGCTATGAATACAGGTACTTTAAGAG
TAGGTATCATTACAATAGACACAGTACGGCTAGGCTACGCCGGTGAGGCG
AAAAATCCTATTCTTGTCAACATGGCCTCAAAATTGTATAGGATTTTAGT
ACAAAAATCGGCCTCAAAATCGTGCACTTATAGGAGTTTATTCAAATAAT
ATTTAATCGTTGCAAGCCAAGGTTGTCGCCCGTGAAGTGTGCGTTGGCAG
GACGATGCGCGGGGTAGGTTTGGGATAAGGTGTGGCGACCCACGGCAGGC
GTATCGCTATGCATTTGAAAATGTAAATCTGGTATCGGATTTAGTATACC
CAATCCGGCTTCAGTTTGAAAATGTAAATCGTATGGAATTGAGTATGGCC
TCAGTATATTGTAGTATATAAAATGGTTGACTCTTGTATTAATTAATAAA
TATAGTTTGGTTTTAGTGTGGTGGTCCACTCTAAAGTCGCAATTAAGAAA
CGTTCAAAGATTTTTGGCAGAATTTTTCTCCTGACTACCGTATAGCCGTA
GATGCGGGGTGGGCATGTGGGTCAATCAGGATGATGACCAGCAGCGTGTA
TAAATCGTATCATCCTTTTGAAACGCAGGCTGGCGGGCGAAAACCCTACG
GCATATCGCTCCGTCCCGGCATTGTTGGGACGCGTGGTCTATGTATGTCC
GTTTGGATACGACATGCGTTTAACGTAAGTACTACAACACTGTGATTTGC
GGCTCGGATGAGTGTGAAGACCGTGTCCATGTAGTGGCGGAATGCCCGTT
TCATGAAAGGGAGAGAGAAAAACGAACGACTAGACTGAGAAGAATTGAAG
GCTGTGACGGACAAAATTTTGAAGCATGGGACAACCAGACAAAGGCGGTG
GCCATGTACTGGGGAATGTGAAGTGGCCTGAGTAAGCGAAAAGTGAAGTA
GACAGGATAGGAAAAATGTATATGTGCCACCTTTGGTAAGATTAGGAAGG
AACGTTTGGCCATCGGTGATGGATCGATCCTGTGGGAATAAATTCACCGT
CCTCTCGAGGACGCGTGGTCAATGAATGGCCTAACAGCTAAGTCATGAAA
AACGTGAGTACCCCCCCCCCCCCACTCCCCACTCTCCGCGCGCGATGTAT
CATGTGATAGCTGGCGTGGCACTGGTGGGTCGCTGCTATCATACAGCAGG
TCGGCTTTTAATGGGTCGAATTTTGTGTTTTAATCGTGGTGCATTGTCTC
TCATTGTGTGTATGAACTGGCTGGTTGTAAAAAAAAACAGCCTGCCCGTG
GTCATTTTCCTCTTTTGGCGCGATATGCGTGTGTGTTGTGTGTAGCTTTC
AGGAGCAATGATGACGATGATGGTGGTCTTAGGTTCGCAGATATCAAAAT
CCAGACGTGTGTTGTTATCAGTGGGGGAGTGCGGGGGGGGGGGGGGGGCC
CCCCCTGGCGAAAAAAAACCCAAAAAATTACCAAAAACACCAAAAACGGG
GTGAAAATAGGAAGGGGGCAAATCTGAAAAAAATTCCACCAAAATCTTCT
AAACAGACTNNNNNNNNNNAGAGAAGCGTTGGTTTGGGTGTTGTGTTTTT
ATGGTGAAAAATAAAAAGAGGGTGGTGTGTTGGGGGTGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGCACTCGCTGGCGAAAACAAACCCAAAAA
ATTATCAAAAACCACAAAAACAGAGTGAAAATGATGATTGGGAAAATCTT
GAAAACATGTCACTCAAGTCTACTTACAGTACTTGTATGGCGATTTTTTC
ATTTTTCTTTTAGCAGACCCCAAGTTTGGGCGTATGCCCCCTTTGAATCC
GAGCATTTGCGTCAAACTATTTATCATGCATGTGTGATGCTATATATAAT
ACTGCTGTTACACAATATTACGTAATTCCGTAGTTTTCATTTTTAGAAAT
CTAGGTTTCTCATTTTACAAACGAGCGGTTGGTTGTATGTGTGATGATCA
ATCAATCAATCAATCAATCAATCAATCAAATCAATCAATCAATCAATCAA
TCAATCAACCAATCAACCAATCAATCAATCAATCAATCAATCAATCAACC
AACCAACCAAATCAATCAATCAACCAACCAATCAAATCAATTTGTGTGCG
TATCATAGGTACTTTGTAGTTCGTTTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTTTTTTTTTCTTTTTTTTTCGTTCTGCAGTTTGGACCCAAGCAGT
ACAGTAACAGGTATCTGCTGCTTGCGGTGTGGATCTAACCAGCACTTGAG
ACGTACCATACATAAATACTATAACGGAGTTACACTATAATCAAGTAATG
ATCAAGTAATCAGGACCATGAATACCCAACTATGTAATACAAAATAACAG
GAACTGCCTCACAGGCGCTGTAGATGGAGGAAAATGTAGTATAATGGTGT
GTGAATGTATACATGACAATTCATTGATCAAAATAAGAATTAGGGAGATG
TGTAGTAAGTGATAAGAAGCGATAGAACAGAGCCCCGATTTGGCTCAGTG
TGCAGTATGGAATAGAAACTCGAAGAGTTCAAAAAAAAAAACCACCGGGA
GAACCCGAAGAAAGAACAATAGCAAAAAAGGAGCAAAAAGTAGACTGATG
ATGAGCGCTTCCGAAATTATTTACCACAGATGATGAGCGTTTCCGAAATT
ATTTACCACTGAGAGATGAGAGAAGCGGGAACACCATAAACGGGCAATAT
AAATGTCGAACGACGATGGTCCTCACGCAGCGCTGACAGCGATCGCTAAA
AAGGGAATGTAGGCCTGTGGTGAGCCGAGAGCGGGATGGTGGTCCGCACG
CAGGCTTCTCAGCAAAAAGACAATTGTAAAAAGATACTTCGAAGTATATT
CTTAATATCTATTACTAATAGCGGGATCTGTTGTAAGTGTCGTAATCAGT
TACTCAACCAATTATTCAATCAATCGATCATCCAATCAATCAATGAAATC
ATTAGATTAATCTATCTATCCAATCAAGTATTCACTCCAATCAATCATCC
AATCAATCAAATCAAATCAATAGATTAATCTATCCAATCCAGTAATCACT
CCAATCAATCCATCAATCAATCAATCAATCCGTTTGTGTACGTACGTACC
TACCTACGTTCGTTCGTTTTTTTTGTTTTCATTTTTTTTCTTATATTTGT
CAGGTACCCGTTGGAGCTAGAGGTGCCCAAGAAGATAATGTCTCCATCCT
TACTCCACGAGGCGTCAAAGCGAGGTCCTCTCAAGTACCGCCTCTTCACA
GTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8652:1731..8933+

>mRNA_S-dermatodea_contig8652.16803.1 ID=mRNA_S-dermatodea_contig8652.16803.1|Name=mRNA_S-dermatodea_contig8652.16803.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at S-dermatodea_contig8652:1731..8933+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCGACCTAGATCCGCCAGCGTCCTCCCAACCAAACAACAACCCTAACTC
TAACTTCACGGAGGGGGCATCGTCGGGGGGCCCTTGGGGAACCACAAACG
GCTCTGGCTCCGAAACAGCTAACGGGGCGCCAGGCAGTGGAGGGAGGAGC
GGTCCTTGGGGTTCATCGGGCGGGGGGAGAGGGGGGGGGGCGTGGGGCGG
GGCAGGGATGGCGCCGGCGCCGGGCACGGGAGCCACGGTTTTGGAGGATG
CTCTCGCGGCGTTGTTCGGGGGGGAGGCTGTGGCCGGTGTGAAGGGAAGG
AAGAACAGAGAGCTCGACCTAGATCCGCCAGCGTCCTCCCAACCAAACAA
CAACCCTAACTCTAACTTCACGGAGGGGGCATCGTCGGGGGGCCCTTGGG
GAACCACAAACGGCTCTGGCTCCGAAACAGCTAACGGGGCGCCAGGCAGT
GGAGGGAGGAGCGGTCCTTGGGGTTCATCGGGCGGGGGGAGAGGGGGGGG
GGCGTGGGGCGGGGCAGGGATGGCGCCGGCGCCGGGCACGGGAGCCACGG
TTTTGGAGGATGCTCTCGCGGCGTTGTTCGGGGGGGAGGCTGTGGCCGGT
GTGAAGGGAAGGAAGAACAGAGAGGTGTCTGCCTCGCGAACCCTGACGCT
GGAACGAGCGCCAAAAGTGCTTACGCTGCACCTCAAGCAATTCTCCTTCC
ACCCCGATCTTGGCCCTCGGAAGCTCGCGCGCCGTGTCAGGTGTCTGCCT
CGCGAACCCTGACGCTGGAACGAGCGCCAAAAGTGCTTACGCTGCACCTC
AAGCAATTCTCCTTCCACCCCGATCTTGGCCCTCGGAAGCTCGCGCGCCG
TGTCAGGTACCCGTTGGAGCTAGAGGTGCCCAAGAAGATAATGTCTCCAT
CCTTACTCCACGAGGCGTCAAAGCGAGGTCCTCTCAAGTACCGCCTCTTC
ACAGTGGTACCCGTTGGAGCTAGAGGTGCCCAAGAAGATAATGTCTCCAT
CCTTACTCCACGAGGCGTCAAAGCGAGGTCCTCTCAAGTACCGCCTCTTC
ACAGTG
back to top