mRNA_S-dermatodea_contig86519.16802.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86519.16802.1
Unique NamemRNA_S-dermatodea_contig86519.16802.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86519.16802.1 vs. uniprot
Match: A0A6H5KDM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.600e-11
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:   13 SPCGGWKIVHDHLAENAERVKSRVQDEWFDLQQKDNEPPKEYFLRAFDLVVKNASFGLNLSEHDANRHILRHLSTKFETEKKILNAIGDFLRQKLETV 306
            SP  GWKIV +   E  +  KSR++ +W +L++K +E P++Y  RA  L ++ AS G+   E DAN+ I R L + +   K IL A      + LETV
Sbjct:   69 SPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEKKASESPQDYIARAEALRLRLASVGMIKDETDANKEIARGLPSSYVVHKGILLAHDVLTLRTLETV 166
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BLAST of mRNA_S-dermatodea_contig86519.16802.1 vs. uniprot
Match: A0A6H5JN82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN82_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.000e-8
Identity = 29/102 (28.43%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:    1 MTNGSPCGGWKIVHDHLAENAERVKSRVQDEWFDLQQKDNEPPKEYFLRAFDLVVKNASFGLNLSEHDANRHILRHLSTKFETEKKILNAIGDFLRQKLETV 306
            +++G P   W+I  +H   +A   ++ +Q EW +L Q     PKEY  R + L  + +S+G+ ++E DANRH++R+L  ++      L +     ++++E +
Sbjct:  205 ISSGCPTESWRIFRNHFQLHAHTERTSLQLEWQELTQGVQHHPKEYLSRGWVLRQRLSSWGVKITEDDANRHLVRNLLPEYVVYTGFLMSESGLEKERVERI 306
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BLAST of mRNA_S-dermatodea_contig86519.16802.1 vs. uniprot
Match: A0A6H5KHU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.240e-6
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:   13 SPCGGWKIVHDHLAENAERVKSRVQDEWFDLQQKDNEPPKEYFLRAFDLVVKNASFGLNLSEHDANRHILRHL-STKFETEKKILNAIGDFLRQKLETV 306
            SP  GWKIV +   E  +  KSR++ +W +L+ +++E P++Y   +  L ++ AS G    E  AN+ I R L S+ +  +K  L A        LETV
Sbjct:  203 SPQKGWKIVTEFYQEKKQSEKSRLEQDWKELEMRESESPQDYIAHSEALRLRLASVGTIKDETYANKDIARGLPSSLYAVQKGNLLAYDVLTLHTLETV 301
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86519.16802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDM9_9PHAE7.600e-1138.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN82_9PHAE3.000e-828.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHU8_9PHAE3.240e-634.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86519contigS-dermatodea_contig86519:22..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.5878873-CDS-S-dermatodea_contig86519:21..3271622925357.5878873-CDS-S-dermatodea_contig86519:21..327Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86519 22..327 +
1694079878.8450444-CDS-S-dermatodea_contig86519:21..3271694079878.8450444-CDS-S-dermatodea_contig86519:21..327Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86519 22..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86519.16802.1prot_S-dermatodea_contig86519.16802.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86519 22..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86519.16802.1

>prot_S-dermatodea_contig86519.16802.1 ID=prot_S-dermatodea_contig86519.16802.1|Name=mRNA_S-dermatodea_contig86519.16802.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
MTNGSPCGGWKIVHDHLAENAERVKSRVQDEWFDLQQKDNEPPKEYFLRA
FDLVVKNASFGLNLSEHDANRHILRHLSTKFETEKKILNAIGDFLRQKLE
TV
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mRNA from alignment at S-dermatodea_contig86519:22..327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86519.16802.1 ID=mRNA_S-dermatodea_contig86519.16802.1|Name=mRNA_S-dermatodea_contig86519.16802.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at S-dermatodea_contig86519:22..327+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGAATGGTTCGCCGTGTGGAGGGTGGAAAATCGTGCATGATCATCT
TGCCGAAAATGCTGAGCGTGTGAAGAGCAGAGTCCAGGACGAATGGTTTG
ACTTGCAGCAGAAGGACAACGAACCTCCCAAGGAATATTTCTTGAGAGCG
TTTGATCTTGTAGTGAAGAACGCTAGTTTTGGCCTCAACCTTTCAGAGCA
TGATGCTAACCGCCACATCCTTCGACACCTTTCCACAAAGTTTGAAACTG
AGAAGAAAATCCTCAACGCTATCGGTGATTTTTTGCGGCAGAAACTAGAG
ACGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig86519:22..327+

>mRNA_S-dermatodea_contig86519.16802.1 ID=mRNA_S-dermatodea_contig86519.16802.1|Name=mRNA_S-dermatodea_contig86519.16802.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig86519:22..327+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGAATGGTTCGCCGTGTGGAGGGTGGAAAATCGTGCATGATCATCT
TGCCGAAAATGCTGAGCGTGTGAAGAGCAGAGTCCAGGACGAATGGTTTG
ACTTGCAGCAGAAGGACAACGAACCTCCCAAGGAATATTTCTTGAGAGCG
TTTGATCTTGTAGTGAAGAACGCTAGTTTTGGCCTCAACCTTTCAGAGCA
TGATGCTAACCGCCACATCCTTCGACACCTTTCCACAAAGTTTGAAACTG
AGAAGAAAATCCTCAACGCTATCGGTGATTTTTTGCGGCAGAAACTAGAG
ACGGTGATGACGAATGGTTCGCCGTGTGGAGGGTGGAAAATCGTGCATGA
TCATCTTGCCGAAAATGCTGAGCGTGTGAAGAGCAGAGTCCAGGACGAAT
GGTTTGACTTGCAGCAGAAGGACAACGAACCTCCCAAGGAATATTTCTTG
AGAGCGTTTGATCTTGTAGTGAAGAACGCTAGTTTTGGCCTCAACCTTTC
AGAGCATGATGCTAACCGCCACATCCTTCGACACCTTTCCACAAAGTTTG
AAACTGAGAAGAAAATCCTCAACGCTATCGGTGATTTTTTGCGGCAGAAA
CTAGAGACGGTG
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