mRNA_S-dermatodea_contig8650.16798.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8650.16798.1
Unique NamemRNA_S-dermatodea_contig8650.16798.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8650.16798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8650contigS-dermatodea_contig8650:1376..2091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size716
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8650.16798.1prot_S-dermatodea_contig8650.16798.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8650 1384..1839 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.3666708-UTR-S-dermatodea_contig8650:1375..13831622925357.3666708-UTR-S-dermatodea_contig8650:1375..1383Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8650 1376..1383 +
1694079878.7328758-UTR-S-dermatodea_contig8650:1375..13831694079878.7328758-UTR-S-dermatodea_contig8650:1375..1383Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8650 1376..1383 +
1622925357.3910472-UTR-S-dermatodea_contig8650:1839..20911622925357.3910472-UTR-S-dermatodea_contig8650:1839..2091Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8650 1840..2091 +
1694079878.755228-UTR-S-dermatodea_contig8650:1839..20911694079878.755228-UTR-S-dermatodea_contig8650:1839..2091Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8650 1840..2091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.380237-CDS-S-dermatodea_contig8650:1383..18391622925357.380237-CDS-S-dermatodea_contig8650:1383..1839Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8650 1384..1839 +
1694079878.743447-CDS-S-dermatodea_contig8650:1383..18391694079878.743447-CDS-S-dermatodea_contig8650:1383..1839Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8650 1384..1839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8650.16798.1

>prot_S-dermatodea_contig8650.16798.1 ID=prot_S-dermatodea_contig8650.16798.1|Name=mRNA_S-dermatodea_contig8650.16798.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=152bp
MYPISSLSISERRNQHDEPKRAIAPTNRGSFSENSMTITVHACMQIQESR
LFEVWGRGPNGSPHPHSRQLPTTNPPEAYGQTPRRENYYLLVNTYCVDCR
YVVVDLLLNLLQVHNNCSAVCADCFLSLRPHFPPRELLLSTGSASSAAAA
S*
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mRNA from alignment at S-dermatodea_contig8650:1376..2091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8650.16798.1 ID=mRNA_S-dermatodea_contig8650.16798.1|Name=mRNA_S-dermatodea_contig8650.16798.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=716bp|location=Sequence derived from alignment at S-dermatodea_contig8650:1376..2091+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTACGTATGTATCCCATCTCTTCTCTGTCGATATCGGAACGAAGAAAC
CAACATGATGAGCCAAAGAGGGCCATCGCACCCACAAACAGGGGTTCGTT
TTCAGAAAACAGTATGACTATTACCGTACACGCCTGCATGCAAATACAAG
AATCGCGACTTTTTGAAGTGTGGGGGAGAGGCCCAAACGGCTCCCCTCAC
CCCCACTCGCGTCAATTGCCAACAACAAACCCGCCAGAAGCCTACGGCCA
GACTCCACGACGAGAAAATTACTATTTATTAGTTAATACATACTGTGTAG
ACTGTAGGTATGTAGTAGTAGACTTGCTTCTTAATCTTCTACAAGTACAC
AACAACTGTAGTGCCGTCTGTGCCGATTGTTTTTTGTCGCTACGTCCTCA
TTTTCCTCCTCGCGAGTTGCTGCTGAGCACTGGCTCTGCTTCTTCTGCTG
CTGCTGCTTCCTAGCGAACCATGCCGCAGACTGTAAACAAACGCTGCGAC
AAAAACCGTCAACACCCACCACCACCATCTTCTTCATCGTCACACAATCA
CACATACGCACACACAGTTAGTACTTTCACGGAAAAAAAACAAGGAAAAA
GAATACACACACACACAAACACACACGGCATAAAAGCCAACACCGCCACG
TTTGCTCGCTTCCTTTGCGGTTGCTTTTACTTCAACGAAATGATCCATCC
TCATCCATCCTCTACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8650:1376..2091+

>mRNA_S-dermatodea_contig8650.16798.1 ID=mRNA_S-dermatodea_contig8650.16798.1|Name=mRNA_S-dermatodea_contig8650.16798.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at S-dermatodea_contig8650:1376..2091+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATCCCATCTCTTCTCTGTCGATATCGGAACGAAGAAACCAACATGA
TGAGCCAAAGAGGGCCATCGCACCCACAAACAGGGGTTCGTTTTCAGAAA
ACAGTATGACTATTACCGTACACGCCTGCATGCAAATACAAGAATCGCGA
CTTTTTGAAGTGTGGGGGAGAGGCCCAAACGGCTCCCCTCACCCCCACTC
GCGTCAATTGCCAACAACAAACCCGCCAGAAGCCTACGGCCAGACTCCAC
GACGAGAAAATTACTATTTATTAGTTAATACATACTGTGTAGACTGTAGG
TATGTAGTAGTAGACTTGCTTCTTAATCTTCTACAAGTACACAACAACTG
TAGTGCCGTCTGTGCCGATTGTTTTTTGTCGCTACGTCCTCATTTTCCTC
CTCGCGAGTTGCTGCTGAGCACTGGCTCTGCTTCTTCTGCTGCTGCTGCT
TCCTAGATGTATCCCATCTCTTCTCTGTCGATATCGGAACGAAGAAACCA
ACATGATGAGCCAAAGAGGGCCATCGCACCCACAAACAGGGGTTCGTTTT
CAGAAAACAGTATGACTATTACCGTACACGCCTGCATGCAAATACAAGAA
TCGCGACTTTTTGAAGTGTGGGGGAGAGGCCCAAACGGCTCCCCTCACCC
CCACTCGCGTCAATTGCCAACAACAAACCCGCCAGAAGCCTACGGCCAGA
CTCCACGACGAGAAAATTACTATTTATTAGTTAATACATACTGTGTAGAC
TGTAGGTATGTAGTAGTAGACTTGCTTCTTAATCTTCTACAAGTACACAA
CAACTGTAGTGCCGTCTGTGCCGATTGTTTTTTGTCGCTACGTCCTCATT
TTCCTCCTCGCGAGTTGCTGCTGAGCACTGGCTCTGCTTCTTCTGCTGCT
GCTGCTTCCTAG
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