mRNA_S-dermatodea_contig86483.16797.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86483.16797.1
Unique NamemRNA_S-dermatodea_contig86483.16797.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86483.16797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86483contigS-dermatodea_contig86483:265..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.3106687-CDS-S-dermatodea_contig86483:264..3241622925357.3106687-CDS-S-dermatodea_contig86483:264..324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86483 265..324 +
1694079878.6934822-CDS-S-dermatodea_contig86483:264..3241694079878.6934822-CDS-S-dermatodea_contig86483:264..324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86483 265..324 +
1622925357.3239775-CDS-S-dermatodea_contig86483:342..4261622925357.3239775-CDS-S-dermatodea_contig86483:342..426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86483 343..426 +
1694079878.7161634-CDS-S-dermatodea_contig86483:342..4261694079878.7161634-CDS-S-dermatodea_contig86483:342..426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86483 343..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86483.16797.1prot_S-dermatodea_contig86483.16797.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86483 265..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86483.16797.1

>prot_S-dermatodea_contig86483.16797.1 ID=prot_S-dermatodea_contig86483.16797.1|Name=mRNA_S-dermatodea_contig86483.16797.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=48bp
PGARRRLDRVQAKLAKAAASTAKRRHRLQSQLAETGARDTSELREWI*
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mRNA from alignment at S-dermatodea_contig86483:265..426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86483.16797.1 ID=mRNA_S-dermatodea_contig86483.16797.1|Name=mRNA_S-dermatodea_contig86483.16797.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig86483:265..426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAGGTGCAAGGCGCAGACTTGATAGGGTACAGGCGAAGTTGGCGAAGGC
GGCCGCGTCAGTTTAGCTTGCCCGTAAGACAGCCAAGCGAAGGCACAGGT
TACAGAGCCAACTAGCAGAGACTGGCGCGCGCGACACATCAGAGTTGAGA
GAGTGGATCTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig86483:265..426+

>mRNA_S-dermatodea_contig86483.16797.1 ID=mRNA_S-dermatodea_contig86483.16797.1|Name=mRNA_S-dermatodea_contig86483.16797.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig86483:265..426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAGGTGCAAGGCGCAGACTTGATAGGGTACAGGCGAAGTTGGCGAAGGC
GGCCGCGTCACCAGGTGCAAGGCGCAGACTTGATAGGGTACAGGCGAAGT
TGGCGAAGGCGGCCGCGTCAACAGCCAAGCGAAGGCACAGGTTACAGAGC
CAACTAGCAGAGACTGGCGCGCGCGACACATCAGAGTTGAGAGAGTGGAT
CTAGACAGCCAAGCGAAGGCACAGGTTACAGAGCCAACTAGCAGAGACTG
GCGCGCGCGACACATCAGAGTTGAGAGAGTGGATCTAG
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