mRNA_S-dermatodea_contig86441.16795.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86441.16795.1
Unique NamemRNA_S-dermatodea_contig86441.16795.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86441.16795.1 vs. uniprot
Match: A0A6G6CDI6_SACJA (Sulfotransferase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G6CDI6_SACJA)

HSP 1 Score: 71.6 bits (174), Expect = 2.410e-13
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   10 RHLRLRYEDVATSPELAANLIYVWSGLRPVPSSVLNWIEQNTKLPGCQHGT 162
            R+L +RYED+AT+PE+A  L+Y W+GL P+P++V  WI+ NTK+P C  G+
Sbjct:  154 RYLLMRYEDIATTPEIAVELMYYWAGLGPLPANVKEWIDANTKMPACDSGS 204
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BLAST of mRNA_S-dermatodea_contig86441.16795.1 vs. uniprot
Match: A0A7L4XQX3_SACJA (Carbohydrate sulfotranserase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A7L4XQX3_SACJA)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-12
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   10 RHLRLRYEDVATSPELAANLIYVWSGLRPVPSSVLNWIEQNTKLPGCQHG 159
            R+LR+RYED+ATSPELA   IY W GL  VP+SV  W+E NT +P C  G
Sbjct:  232 RYLRVRYEDIATSPELAVAFIYYWCGLGTVPASVSEWVEVNTNMPTCDGG 281
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86441.16795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6G6CDI6_SACJA2.410e-1352.94Sulfotransferase n=1 Tax=Saccharina japonica TaxID... [more]
A0A7L4XQX3_SACJA1.050e-1260.00Carbohydrate sulfotranserase n=2 Tax=Saccharina ja... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86441contigS-dermatodea_contig86441:14..178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.2457764-CDS-S-dermatodea_contig86441:13..1781622925357.2457764-CDS-S-dermatodea_contig86441:13..178Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86441 14..178 -
1694079878.6738305-CDS-S-dermatodea_contig86441:13..1781694079878.6738305-CDS-S-dermatodea_contig86441:13..178Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86441 14..178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86441.16795.1prot_S-dermatodea_contig86441.16795.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86441 14..178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86441.16795.1

>prot_S-dermatodea_contig86441.16795.1 ID=prot_S-dermatodea_contig86441.16795.1|Name=mRNA_S-dermatodea_contig86441.16795.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
YALRHLRLRYEDVATSPELAANLIYVWSGLRPVPSSVLNWIEQNTKLPGC
QHGTR
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mRNA from alignment at S-dermatodea_contig86441:14..178-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86441.16795.1 ID=mRNA_S-dermatodea_contig86441.16795.1|Name=mRNA_S-dermatodea_contig86441.16795.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at S-dermatodea_contig86441:14..178- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGCGCTTAGGCATTTGCGTTTGCGGTACGAAGACGTGGCCACCTCTCC
CGAGCTTGCTGCGAATCTCATCTACGTTTGGTCCGGGCTTCGCCCCGTTC
CCTCTAGTGTTTTAAACTGGATCGAACAGAACACGAAGCTACCCGGATGC
CAGCACGGAACACGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig86441:14..178-

>mRNA_S-dermatodea_contig86441.16795.1 ID=mRNA_S-dermatodea_contig86441.16795.1|Name=mRNA_S-dermatodea_contig86441.16795.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig86441:14..178- (Saccorhiza dermatodea SderLu1190fm monoicous)
TACGCGCTTAGGCATTTGCGTTTGCGGTACGAAGACGTGGCCACCTCTCC
CGAGCTTGCTGCGAATCTCATCTACGTTTGGTCCGGGCTTCGCCCCGTTC
CCTCTAGTGTTTTAAACTGGATCGAACAGAACACGAAGCTACCCGGATGC
CAGCACGGAACACGTTACGCGCTTAGGCATTTGCGTTTGCGGTACGAAGA
CGTGGCCACCTCTCCCGAGCTTGCTGCGAATCTCATCTACGTTTGGTCCG
GGCTTCGCCCCGTTCCCTCTAGTGTTTTAAACTGGATCGAACAGAACACG
AAGCTACCCGGATGCCAGCACGGAACACGT
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