mRNA_S-dermatodea_contig8643.16794.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: D8LSU0_ECTSI (Similar to helicase, lymphoid-specific isoform 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU0_ECTSI) HSP 1 Score: 156 bits (395), Expect = 9.010e-42 Identity = 89/131 (67.94%), Postives = 102/131 (77.86%), Query Frame = 3
Query: 12 EDDDMDVSDRGSDS-GDDIARAKKVLEECSSLSKKLASVISSWAVSDEDGGGSAAGAGSS----NGALELTNLKAGGKAVTTNEEIEDACPGLKLNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
+DD MD SDRGSDS D+ ARA+KVL ECS+LSKKLASVIS+WA + GALE+ +LK GGKAVTTNEE+++ACPGLKLNPYQLVGVNWMCLLR+T VNGVLADEMGLGKTVQ+I
Sbjct: 373 DDDGMDGSDRGSDSDADEGARARKVLSECSALSKKLASVISTWAGTXXXXXXXXXXXXXXXXXXRGALEICSLKGGGKAVTTNEEVQEACPGLKLNPYQLVGVNWMCLLRDTNVNGVLADEMGLGKTVQSI 503
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: A0A6H5KRD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD4_9PHAE) HSP 1 Score: 156 bits (395), Expect = 9.420e-42 Identity = 92/140 (65.71%), Postives = 105/140 (75.00%), Query Frame = 3
Query: 12 EDDDMDVSDRGSDS-GDDIARAKKVLEECSSLSKKLASVISSWAVSDED-------------GGGSAAGAGSSNGALELTNLKAGGKAVTTNEEIEDACPGLKLNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
+DD MD SDRGSDS D+ ARA+KVL ECS+LSKKLASVIS+WA + GGG GALE+ +LK GGKAVTTNEE+++ACPGLKLNPYQLVGVNWMCLLR+T VNGVLADEMGLGKTVQ+I
Sbjct: 476 DDDGMDGSDRGSDSDADEGARARKVLSECSALSKKLASVISTWAGTXXXXXXXXXXXXXXRVGGG--------RGALEICSLK-GGKAVTTNEEVQEACPGLKLNPYQLVGVNWMCLLRDTNVNGVLADEMGLGKTVQSI 606
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: K3WMP5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMP5_GLOUD) HSP 1 Score: 87.0 bits (214), Expect = 2.290e-17 Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 3
Query: 78 KVLEECSSLSKKLASVISSWAVSDEDGGGSAAGAGSSNGA----------LELTNLKAGGKAVTTNEEIEDACPGLKLNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
++L +C +++KL I SW+ +A + + +GA + T+ AGG+ V T ++I + C L LNPYQ+VGVNW+ LL E V+GVLADEMGLGKTVQTI
Sbjct: 382 QLLRDCERIAEKLRKSIKSWSGGPAASSSPSAASANDDGAEDEDHVSIAAINSTDGSAGGRRVVTQDDIPNICETLVLNPYQVVGVNWLLLLCENSVSGVLADEMGLGKTVQTI 495
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: W4GVJ4_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVJ4_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.620e-12 Identity = 50/140 (35.71%), Postives = 67/140 (47.86%), Query Frame = 3
Query: 3 VYNEDDDMDVSDRGSDSGDDIARAKK-----------VLEECSSLSKKLASVISSWAVSDEDGGGSAAGAGSSNGALELTNLKAGGKAVTTNEEIEDACPGLKLNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
V ++DDD SD GD + + +L+ C +++ L I+ W S+ D + LT + + T EI P L L PYQLVGVNW+ LL + V+ VLADEMGLGKTVQTI
Sbjct: 300 VLSDDDDQSDGVDDSDDGDSYGKRRNTKRSKQDEVAGMLQSCEAIASTLRVSIAKWGQSNTDE------------QVTLTTINDADHRMLTQGEIPGLSPSLVLQPYQLVGVNWLYLLYQHKVSAVLADEMGLGKTVQTI 427
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: A0A397FBG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FBG6_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 4.020e-12 Identity = 51/134 (38.06%), Postives = 69/134 (51.49%), Query Frame = 3
Query: 9 NEDDDMDVSDRGSDSGD--DIARAKK-----VLEECSSLSKKLASVISSWAVSDEDGGGSAAGAGSSNGALELTNLKAGGKAVTTNEEIEDACPGLKLNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
N+ D +D SD G G + R+K+ +L+ C +++ L I+ W S+ D + LT + + T EI P L L PYQLVGVNW+ LL + V+ VLADEMGLGKTVQTI
Sbjct: 66 NQSDGVDDSDDGDSYGKRRNTKRSKQDEVAGMLQSCEAIASTLRVSIAKWGQSNTDE------------QVTLTTINDADHRMLTQGEIPGLSPSLVLQPYQLVGVNWLYLLYQHKVSAVLADEMGLGKTVQTI 187
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: A0A1V9YP31_9STRA (ATP-dependent helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YP31_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 6.640e-11 Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 3
Query: 81 VLEECSSLSKKLASVISSWA---VSDEDGGGSAAGAGSSNGALELTNLKAGGKAVTTNEEIEDACPGLKLNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
+L+ C++L+++L + +S W+ ++DE L + AG + V T + I P L+L PYQ+VGVNW+ LL + ++ VLADEMGLGKTVQTI
Sbjct: 291 ILQTCAALAEELRTSVSQWSSATIADE---------------TALVAVDAGVQFVQTRD-IPGLSPTLELQPYQVVGVNWLYLLYQHKMSAVLADEMGLGKTVQTI 380
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: A0A7S3G5R0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G5R0_9EUKA) HSP 1 Score: 66.6 bits (161), Expect = 6.930e-11 Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 3
Query: 279 LNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
L P+QLVG+NWM LL+E G+NG+LADEMGLGKTVQTI
Sbjct: 12 LRPFQLVGLNWMLLLKELGLNGILADEMGLGKTVQTI 48
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: A0A024UXM7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UXM7_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 9.100e-11 Identity = 41/103 (39.81%), Postives = 58/103 (56.31%), Query Frame = 3
Query: 81 VLEECSSLSKKLASVISSWAVSDEDGGGSAAGAGSSNGALELTNLKAGGKAVTTNEEIEDACPGLKLNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
+L+ C ++S L I+ W S+ D + LT +K + + T ++I P L L PYQ+VG+NW+ LL + V+ VLADEMGLGKTVQTI
Sbjct: 333 MLQSCEAISSTLRLSIAKWGQSNTDE------------EVALTAIK-DDERMLTQKDIPGLNPSLVLQPYQVVGINWLYLLYQHKVSAVLADEMGLGKTVQTI 422
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: A0A7M7IMB7_NASVI (Uncharacterized protein n=2 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7IMB7_NASVI) HSP 1 Score: 67.4 bits (163), Expect = 1.670e-10 Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 3
Query: 231 AVTTNEEIEDACPGLKLNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
A T E+ + GLKL PYQ+VG+NW+ +L VNG+LADEMGLGKTVQ I
Sbjct: 267 ASTIKEQPKGLADGLKLAPYQMVGLNWLAVLHAQNVNGILADEMGLGKTVQVI 319
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Match: F6UJS3_CIOIN (Uncharacterized protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6UJS3_CIOIN) HSP 1 Score: 67.0 bits (162), Expect = 2.220e-10 Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 3
Query: 267 PGLKLNPYQLVGVNWMCLLRETGVNGVLADEMGLGKTVQTI 389
P L PYQ++G+NWMCLL+ +NG+LADEMGLGKT+QTI
Sbjct: 135 PRFTLKPYQMIGLNWMCLLQRNKLNGILADEMGLGKTIQTI 175 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8643.16794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8643.16794.1 >prot_S-dermatodea_contig8643.16794.1 ID=prot_S-dermatodea_contig8643.16794.1|Name=mRNA_S-dermatodea_contig8643.16794.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp MDVSDRGSDSGDDIARAKKVLEECSSLSKKLASVISSWAVSDEDGGGSAAback to top mRNA from alignment at S-dermatodea_contig8643:6747..7758+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8643.16794.1 ID=mRNA_S-dermatodea_contig8643.16794.1|Name=mRNA_S-dermatodea_contig8643.16794.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1012bp|location=Sequence derived from alignment at S-dermatodea_contig8643:6747..7758+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8643:6747..7758+ >mRNA_S-dermatodea_contig8643.16794.1 ID=mRNA_S-dermatodea_contig8643.16794.1|Name=mRNA_S-dermatodea_contig8643.16794.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig8643:6747..7758+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |