mRNA_S-dermatodea_contig8643.16793.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8643.16793.1
Unique NamemRNA_S-dermatodea_contig8643.16793.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8643.16793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8643contigS-dermatodea_contig8643:4832..6348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size501
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925357.1357358-CDS-S-dermatodea_contig8643:4831..48941622925357.1357358-CDS-S-dermatodea_contig8643:4831..4894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8643 4832..4894 +
1694079878.616939-CDS-S-dermatodea_contig8643:4831..48941694079878.616939-CDS-S-dermatodea_contig8643:4831..4894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8643 4832..4894 +
1622925357.1486337-CDS-S-dermatodea_contig8643:5911..63461622925357.1486337-CDS-S-dermatodea_contig8643:5911..6346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8643 5912..6346 +
1694079878.625522-CDS-S-dermatodea_contig8643:5911..63461694079878.625522-CDS-S-dermatodea_contig8643:5911..6346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8643 5912..6346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8643.16793.1prot_S-dermatodea_contig8643.16793.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8643 4832..6346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8643.16793.1

>prot_S-dermatodea_contig8643.16793.1 ID=prot_S-dermatodea_contig8643.16793.1|Name=mRNA_S-dermatodea_contig8643.16793.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=166bp
DEEESEESCETGADSEEEEEEGEFEDDEDSSEGESDDEPELTDASEGDDL
ELTPAAGQKHTKKRAEKKRSAAPAPAAAAAAAATTTGVTVTTREGGASCP
VPVAEEAPASAASSSVQNGRATRGAASVSNGVKKEGSASGKAKLVVEVED
GGGDEVELVGVKEGGS
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mRNA from alignment at S-dermatodea_contig8643:4832..6348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8643.16793.1 ID=mRNA_S-dermatodea_contig8643.16793.1|Name=mRNA_S-dermatodea_contig8643.16793.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1517bp|location=Sequence derived from alignment at S-dermatodea_contig8643:4832..6348+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGAGGAGGAGAGCGAGGAGAGCTGCGAAACCGGGGCTGACTCAGAGGA
GGAGGAAGAAGAGGTAGGTAGGGAGAGGACAACGGGCTGTTGTTTCCGCC
TGAGACCGTCGCGTGTGATTCGTGTGCGACGTCAAGATGACGCCAAACTG
TAGACATGAGATCTTGAAATGTCTGCGAGGGACGGACGCCTTCAACGAGG
GAGTCTTCATCTTCGTCCCTTCCTGGAAGACGTGGCTTTTGGGGTTGATA
GATCCGTCAATCCCTGGCGATGTTAAAATGTTGGGACGAGTAGGGTGTGC
TGGGGCTTCTTCCCTCGAATCAACCTGTGCATGCTGCCACTGGGCTTAAA
TTAAGGGCTCAAGCAAGCGTTCGTGGTCGTTGCCTTTGTCTTTGTCCTTT
TTGCGCTGTGACATCTTCACGAAACCCGCCTAGCTTTGGCCCATGCTCAG
AATCGTGGCGCCTGACAGCACACGCCCCAAGAGGCAAATAAGAGTCGCGA
GGAAAACTAATTAGAATTTGTTATCCACATTGTTTTGGCGTGGAGAGTGT
CCGTTTTGACGCAAGGAGGAGGAAATGGCTACGTAGCTGCACACACGTAA
AACGGCGCACGGGAGGCGGGTAGGTTCACACCTACACCGTACATAGTCGT
TCTGGGGTTGCCGTGAAGTGGCTCGTGCGGGGGTGTGTAGCCTCGTGCAT
CCAAAATACCCGCGAGCTGATATTTTCACACTACACAACATGCCAGAGGA
TCGACGCGCCTTTCATCCCCCTCCTCCCGACGGAGTACAGATGGACGTTA
AGATACGAACAATGCGAGCGCCCTCACGGTGGCCGGTGGCATTTAGCAGT
GCGCATTTTCTGTGGGGACACGGTTTCTACGCGCTGCCGTAGTTGGCTCT
GTGTTTTGGGCGTTTACATACTCATTCCCATTCCAGCCCCCCCCCCCCCT
CCCCGCGCTCCAGCTACCGATCCCTTTCGCGGAATGGTGCTCGTGCGATG
ATACCATCGAATAAAGAGTGATGTCGAAATAGTTGAGGAAAATCCCCCCC
TCCCCCTAATGGGCGTTTCATGATGAGCAGGGCGAGTTTGAAGACGACGA
AGACAGCAGCGAAGGAGAGAGTGACGACGAGCCGGAGCTGACCGATGCCA
GCGAGGGGGACGACCTGGAGTTAACGCCCGCGGCCGGCCAAAAACACACG
AAAAAGCGTGCCGAGAAGAAACGCTCGGCAGCACCAGCACCAGCAGCGGC
AGCGGCAGCTGCAGCGACGACCACAGGCGTAACCGTCACAACCAGAGAGG
GCGGAGCGAGCTGTCCCGTCCCCGTGGCGGAAGAAGCGCCTGCATCTGCC
GCCTCTAGCAGTGTGCAGAATGGCCGGGCTACCAGGGGGGCGGCATCTGT
CAGCAACGGGGTCAAGAAGGAGGGAAGTGCAAGCGGCAAAGCGAAGCTTG
TCGTTGAGGTAGAGGATGGGGGTGGAGACGAGGTGGAGCTTGTCGGCGTG
AAGGAGGGGGGTTCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8643:4832..6348+

>mRNA_S-dermatodea_contig8643.16793.1 ID=mRNA_S-dermatodea_contig8643.16793.1|Name=mRNA_S-dermatodea_contig8643.16793.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at S-dermatodea_contig8643:4832..6348+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGAGGAGGAGAGCGAGGAGAGCTGCGAAACCGGGGCTGACTCAGAGGA
GGAGGAAGAAGAGGATGAGGAGGAGAGCGAGGAGAGCTGCGAAACCGGGG
CTGACTCAGAGGAGGAGGAAGAAGAGGGCGAGTTTGAAGACGACGAAGAC
AGCAGCGAAGGAGAGAGTGACGACGAGCCGGAGCTGACCGATGCCAGCGA
GGGGGACGACCTGGAGTTAACGCCCGCGGCCGGCCAAAAACACACGAAAA
AGCGTGCCGAGAAGAAACGCTCGGCAGCACCAGCACCAGCAGCGGCAGCG
GCAGCTGCAGCGACGACCACAGGCGTAACCGTCACAACCAGAGAGGGCGG
AGCGAGCTGTCCCGTCCCCGTGGCGGAAGAAGCGCCTGCATCTGCCGCCT
CTAGCAGTGTGCAGAATGGCCGGGCTACCAGGGGGGCGGCATCTGTCAGC
AACGGGGTCAAGAAGGAGGGAAGTGCAAGCGGCAAAGCGAAGCTTGTCGT
TGAGGTAGAGGATGGGGGTGGAGACGAGGTGGAGCTTGTCGGCGTGAAGG
AGGGGGGTTCGGGCGAGTTTGAAGACGACGAAGACAGCAGCGAAGGAGAG
AGTGACGACGAGCCGGAGCTGACCGATGCCAGCGAGGGGGACGACCTGGA
GTTAACGCCCGCGGCCGGCCAAAAACACACGAAAAAGCGTGCCGAGAAGA
AACGCTCGGCAGCACCAGCACCAGCAGCGGCAGCGGCAGCTGCAGCGACG
ACCACAGGCGTAACCGTCACAACCAGAGAGGGCGGAGCGAGCTGTCCCGT
CCCCGTGGCGGAAGAAGCGCCTGCATCTGCCGCCTCTAGCAGTGTGCAGA
ATGGCCGGGCTACCAGGGGGGCGGCATCTGTCAGCAACGGGGTCAAGAAG
GAGGGAAGTGCAAGCGGCAAAGCGAAGCTTGTCGTTGAGGTAGAGGATGG
GGGTGGAGACGAGGTGGAGCTTGTCGGCGTGAAGGAGGGGGGTTCG
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