mRNA_S-dermatodea_contig12743.1679.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12743.1679.1
Unique NamemRNA_S-dermatodea_contig12743.1679.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12743.1679.1 vs. uniprot
Match: D8LTE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE0_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 7.380e-22
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 PVAALAALRPLLAKSAAIRDEESKKAAAEAAXKAKAAALAEQMEGLTDDESGRVKALAGIAAVCLGGLLVQPLFAPPELSA----PAPTVQTQKA 273
            PV ALAALRP+++K  A RD E K  A E A  A+AAA A +MEGLT  + G VKAL+ +AAVCLGGLLVQPLFAPP+L++    P PTVQT+KA
Sbjct:  154 PVVALAALRPVISKGVAARDAEQKAKAIEEAKAAEAAARAAKMEGLTASDEGAVKALSAVAAVCLGGLLVQPLFAPPDLASLPAKPTPTVQTKKA 248
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12743.1679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTE0_ECTSI7.380e-2262.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12743contigS-dermatodea_contig12743:3239..6371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size318
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12743.1679.1prot_S-dermatodea_contig12743.1679.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12743 3241..6371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924260.0276752-CDS-S-dermatodea_contig12743:3240..34291622924260.0276752-CDS-S-dermatodea_contig12743:3240..3429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12743 3241..3429 -
1694079132.1519804-CDS-S-dermatodea_contig12743:3240..34291694079132.1519804-CDS-S-dermatodea_contig12743:3240..3429Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12743 3241..3429 -
1622924260.0417414-CDS-S-dermatodea_contig12743:4942..50261622924260.0417414-CDS-S-dermatodea_contig12743:4942..5026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12743 4943..5026 -
1694079132.163357-CDS-S-dermatodea_contig12743:4942..50261694079132.163357-CDS-S-dermatodea_contig12743:4942..5026Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12743 4943..5026 -
1622924260.052014-CDS-S-dermatodea_contig12743:6329..63711622924260.052014-CDS-S-dermatodea_contig12743:6329..6371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12743 6330..6371 -
1694079132.1760705-CDS-S-dermatodea_contig12743:6329..63711694079132.1760705-CDS-S-dermatodea_contig12743:6329..6371Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12743 6330..6371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12743.1679.1

>prot_S-dermatodea_contig12743.1679.1 ID=prot_S-dermatodea_contig12743.1679.1|Name=mRNA_S-dermatodea_contig12743.1679.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
PVAALAALRPLLAKSAAIRDEESKKAAAEAAAKAKAAALAEQMEGLTDDE
SGRVKALAGIAAVCLGGLLVQPLFAPPELSAPAPTVQTQKAATPAPKKEP
APAPA
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mRNA from alignment at S-dermatodea_contig12743:3239..6371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12743.1679.1 ID=mRNA_S-dermatodea_contig12743.1679.1|Name=mRNA_S-dermatodea_contig12743.1679.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3133bp|location=Sequence derived from alignment at S-dermatodea_contig12743:3239..6371- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGTGGCCGCGTTGGCCGCTCTCCGCCCGTTGCTCGCGAAGGTGCGTTT
GTGCTACTTCTGCCATCCAGTCTGTCATGTTTGCTTTTGCGGCTCTGCTC
CTTCTTCTGTGTCTTTGTCATAGAAAAAGCCTGTTTTGATATAAAAAATG
TACGTGTATGCATAGCGCGCATCTGTCTGTATGTGCGTTTCTGTAGATTT
GGGTAGAACTTTTGAAGCGCCATGGCTGCGGCGGCTGCGGCTGCATGGGC
TGTGGGGCATCGTGGAAGATTCACCGTTTAGTTTTTTAACCGTTCGTGGC
CGGGATGTGGAAAATAGAGGTAGAGGTTTTGTGAGGAGCGCACTGTGATG
GCGGGGGTTTCCACACCCTGGTCGGACGTTTCATGGGGTGGACGGTGACA
TTTTCTCCAGCCGGCAACCTTTGCAAGCGTTTCTACCCCGGACGACTTGC
CGAGAGCCACCGCAGTTTTCGGGTATTGCTACAGCTCCTCTAGGGTGCAT
GATGCTTGCAGTTTGCGCGCGCGGTTCGCTCCGGGAAAGATGCTGTAGTT
TTCGACGGTGTCTGGCTACAAACGCCGCCTTACCTTGACCGATGTCGAGG
GACGGATGGGGGATGCGGGGTCGGGAATGGTCGGCAGCCTTCTTATATGT
GGCGACGCAGCCGCGTCCAGATCATGGTGCGATATTTGCTCTGTCTGGTC
CTCGCCCAGTTGGTTTTCATTCTCCGCGCCACGCTTGGAGTACGTGCACG
GGATGCCCTGATTGCTCGGAGGCAAGACAAGATTATCGTTGTCGTGGCGT
GCTGAGGGCGCGCCGCTGCACCCACGCTTCCACTGCTGTGCGCAGCGTAC
TTGCGCGATTGCAATATATGGGCACATGCCGTAGAGCATTGGGGGAAGAG
CCGCATGTGTCCTTGCCGTTTCGCGCAGTGTTGTTAACGGAACTCAACAC
GTCCGGTGTACTGTTCGGCGCAGACCTGTAGAACGTATTTTACCCCATTT
GTTCGCGACCGTAAGACTCGACGAAATGTGAAGATGAGGGGCAACAGTGC
ATCATTTACATGGAAGAGGTTCGTGCTATCATGAACGAGGAACTACGCCG
CTGCCGTCAACCCAAACTCGACCCTTGCACGCTTTGTGGCGGGACAGCCC
CGCGTCGTGCTTGGGCCAACTCATGGGTGCCTCGTGACTCGTTCACTCAT
GCGTAATATTTTTTTAGCGTCTACAAAAGCAGCGAGCGTAAAAGGCCCTT
CCCGTATGGTCCTAACTACATCCGCAACGCTTGTCCTCTGTTTGTTGGCG
CTCGTCGCTGAACGTGCCGGTGCTGTTGTGCTGTCTTTTGAACAGAGTGC
GGCGATTCGGGACGAAGAGAGCAAGAAGGCGGCGGCCGAGGCAGCCGCGA
AGGCTAAGGCCGCCGCTCTGGCCGAGCAGGTAAGCACGCCACCGCGATGT
TGGCGCAGCAAGAACCTGCCCCCCCCCTCCTTCGCCCCTCCCCTACGCCG
ATGGTCAACCGAATGTGCGCCTTTCGTGGCGATGATGCTTTTCGGAGATG
CCCTATCTTGGACGGTGTCTGATCATCCCCTGTTTTTCATCTGCGAACGC
CGAATACATCATGGCGGCTTCCGCCGTTCCATTTGTCGTTATCTCCTCGA
TATATTTGCATTTGTCGTTTTTCGGAGCCATGGTGGGTCACCTAAGTAGC
ATTTGATGTCTTAGGACGTGCCTTGCAGCTTTCCCCGCATCCCGCGCACC
GATCGGAAGCCTTGCAATACAGCGTTGACCCCCCGCCCAACCCCGCGCAC
GATTGTAGAAACAAATAACAATCCCTCTTTAGTTTTTACGAACACTTGCC
CACGACCACGGGGGAAATGTTGCGGAGACTTGAGATCAACAAGAATACGT
TGTGTCCGCTGCGGGTGAGGGTGTGGCGGTGGCATAGCTTAGGCCGAAAG
AGTTTTAAAGGCTCTCAGGACGCGAGAGTACCTGTGACAGGTCTGCTTGG
CGTTACTGCCGATGTCGTGGGCACCGATGCGACGCGAAATTTTACCCCGG
TGTCCGCTGTTGACCCCGCGTAACCTATCATGTGGTAGGTGAAAGCACAT
ATAGAACCTGGCACGTGTTTGTGAGTGCGAGGCCTAGCGTAACATGTTTG
AACATTTTCAGGCATTCAAAGTGGGTTTCGAGATGTTGTGTCGGTCGGCA
CAGTGCGACGGTGACAACCGCAGCAATTCCGGGCTTGAAAATTTGCGTGT
TCACAAGCATGTGTGTCGTGTGTTTGTTGTTCGCGTTTTCCACAGTTTGG
GGGACCGCGAAAGTCGCCGGGCGGTACAGCGGCAGCATGGATAGGTTTTG
TACGAGTCGTGGTACACTCATTCAGCCTGACGACAGCTGTACTATCGGGC
AGTTGGACAGGGCTTTTCGCTCGCGAAGAATCGCTGGGATGTTGCAGGCA
TGCGCGCTTCGCGCATGGGTTTTCTTGTGAAGTAAACCTTAGCTTTCGAC
GGTCGCGGTCTGTCACCCGGCAGCTACATACTCGCCTGCAATCCTCAACC
GCTGGCTCGCCTTGGAGCTTGCCGGCTGCAAGTGTTTTGGCGCCGCCTCG
GTGTTGACCCGTACAAACCAACGTGCCTGCACAGCAAGACACACTGGCCC
CCAAGCTCGACCGTGGGATGGATCCTCCCGAACAATTGCTATTATTCGCC
CTTGGCCCGTGTGCGTTGCACATCCACGACAGCCCCTTGCTCCGTTCATG
CGCCGGCCAACACGAGCACGAATTTATGTATGTTTTTAACACACCAAAGT
CCACATGTCCCCACCAACTCGCCATTATATCGATCCCGCACTGTGTCATA
GATGACCCTAAACTACTCAACGAACTCATTGCAACACACCCCACCCCTCC
CCACCCCACCAAACACCGCTGCCTCCTTCACCGCCCCTCCAGATGGAAGG
CCTTACCGATGACGAATCCGGGCGCGTCAAGGCCCTCGCAGGCATAGCTG
CCGTCTGCCTCGGCGGCCTCCTCGTGCAGCCGCTTTTCGCCCCCCCGGAG
CTATCGGCTCCCGCGCCCACGGTCCAGACCCAGAAGGCCGCGACCCCGGC
CCCCAAGAAGGAGCCGGCCCCGGCTCCGGCCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12743:3239..6371-

>mRNA_S-dermatodea_contig12743.1679.1 ID=mRNA_S-dermatodea_contig12743.1679.1|Name=mRNA_S-dermatodea_contig12743.1679.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig12743:3239..6371- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGTGGCCGCGTTGGCCGCTCTCCGCCCGTTGCTCGCGAAGCCGGTGGC
CGCGTTGGCCGCTCTCCGCCCGTTGCTCGCGAAGAGTGCGGCGATTCGGG
ACGAAGAGAGCAAGAAGGCGGCGGCCGAGGCAGCCGCGAAGGCTAAGGCC
GCCGCTCTGGCCGAGCAGAGTGCGGCGATTCGGGACGAAGAGAGCAAGAA
GGCGGCGGCCGAGGCAGCCGCGAAGGCTAAGGCCGCCGCTCTGGCCGAGC
AGATGGAAGGCCTTACCGATGACGAATCCGGGCGCGTCAAGGCCCTCGCA
GGCATAGCTGCCGTCTGCCTCGGCGGCCTCCTCGTGCAGCCGCTTTTCGC
CCCCCCGGAGCTATCGGCTCCCGCGCCCACGGTCCAGACCCAGAAGGCCG
CGACCCCGGCCCCCAAGAAGGAGCCGGCCCCGGCTCCGGCCATGGAAGGC
CTTACCGATGACGAATCCGGGCGCGTCAAGGCCCTCGCAGGCATAGCTGC
CGTCTGCCTCGGCGGCCTCCTCGTGCAGCCGCTTTTCGCCCCCCCGGAGC
TATCGGCTCCCGCGCCCACGGTCCAGACCCAGAAGGCCGCGACCCCGGCC
CCCAAGAAGGAGCCGGCCCCGGCTCCGGCC
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