mRNA_S-dermatodea_contig8642.16790.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8642.16790.1
Unique NamemRNA_S-dermatodea_contig8642.16790.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8642.16790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8642contigS-dermatodea_contig8642:394..1891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.9539135-CDS-S-dermatodea_contig8642:394..4721622925356.9539135-CDS-S-dermatodea_contig8642:394..472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 395..472 -
1694079878.5305607-CDS-S-dermatodea_contig8642:394..4721694079878.5305607-CDS-S-dermatodea_contig8642:394..472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 395..472 -
1622925356.970961-CDS-S-dermatodea_contig8642:1666..18911622925356.970961-CDS-S-dermatodea_contig8642:1666..1891Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 1667..1891 -
1694079878.5408356-CDS-S-dermatodea_contig8642:1666..18911694079878.5408356-CDS-S-dermatodea_contig8642:1666..1891Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8642 1667..1891 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8642.16790.1prot_S-dermatodea_contig8642.16790.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8642 395..1891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8642.16790.1

>prot_S-dermatodea_contig8642.16790.1 ID=prot_S-dermatodea_contig8642.16790.1|Name=mRNA_S-dermatodea_contig8642.16790.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
SASSSSDEDDDTVQASASAGAESFFATSSSSALSPRELAAALFMAETTAA
IKASRAGRPVELSASSLDYQRRFILPKSGREARGAGASRNTSVGSSGRGS
G
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mRNA from alignment at S-dermatodea_contig8642:394..1891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8642.16790.1 ID=mRNA_S-dermatodea_contig8642.16790.1|Name=mRNA_S-dermatodea_contig8642.16790.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1498bp|location=Sequence derived from alignment at S-dermatodea_contig8642:394..1891- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGCCAGCAGCAGCAGCGATGAAGACGACGACACCGTTCAAGCGTCCGC
GTCAGCTGGAGCGGAGTCCTTCTTCGCCACTTCATCGAGTTCTGCTCTCT
CCCCGCGCGAGCTGGCCGCCGCCCTGTTCATGGCGGAGACGACTGCCGCC
ATCAAGGCTTCCCGTGCAGGAAGGCCTGTGGAACTTTCCGCTTCGTCTCT
GGATTATCAGAGGCGATTCATATTGGTAAGTGCAACCCAACCGATTTCAA
GTGTGACCGAGAGTGTTTCACACGTCCAACCTGTAGCGTCGTCGCTTATG
GTTCATTCGTCCCTCCCTGTGGAGCGCAGTGAAACGTCCGTCACTGTCGC
ATCGTCCCCCACAGTTGAGGCTCCACAGCAAGCACAGTCAAGCGATTCAT
CGATAGTCTTGAATGCGAGTGGAGTGTTGAGAGCTGCTCAGTCAGGTCCT
TTGACACATACGTCAGTTCCGTCATCAGCAATCGTAAACGCTTCGCCGAG
TGTGCTGAGCTCTCACGAGCAAATCGTGAGTCATACACCACAGCCTATGC
TTTCGTACAGCACAGTAGCAGCTGGTACAGCGTCCGTTCCGTCCGTCCCC
GTCACTACACAGTCGCCTGTGTCAAGTGCACCCACTCACCCCGTTGCGGC
ATCGCGTACAAGCCCCGTAGCGTCGTCCACGATTGAGTGTAATGTCACAG
CTGGCGATTTGCGTGGTGTGCCTCGTCTGTCTGGTGATATCGATCAAAAT
GTGTCTGAAATTCTCACACACTATCGAGTCGTTGTCGGTCTTGTTGCCAG
ACGCAAAAATAATGGGGATGAAGCCTTTGCTGATCGTGTAGCATTGGACC
ACGTTCCGTTGATTGCAACAGGGCCTGCGTTGACGCTTATACAGCAAGTC
ATGACTGGTCAAATTGATACCAGCGCAGCGTCCCGTTCAACAGACCCCGA
TCGTCCGGGTTCTTTCAATGCCCCGCAATCTTGGCCAGAAATGGTCCGCG
CGTTTCTTGATTTGCTCATGCCAGCAAACTCTATTCAAGATTGCGCACTT
CGCTTGGCCACGTTTAAGCAAGAATCTGCTGAGACAGTAGCAGCGTATGC
GATGCGCTTCCGAACCGTGTTGAGCCAGTTCGATGCTGCTGTACAACGTG
CTGATAATAATTGTTCCCCGTGGAATGCGATGACAGTCACGTTGTGGCAA
CATGGACTAAAACCGACCATCCAGTGCTTGCAGTTGGCAGACAAGCCAGC
CACCACGCTCAAACAAGCACTAGAGCGTGAACGTCGTCACGAAGCGTCAG
GCTTAGTTGGTGGTCAAGTCAGTGCGTTAGCTTTTACGCACGTCCCCAAC
TCCGCTGCTGCTCATGCTGTGTCATCAGCCACTAACGCTCGTCCTTCTCG
TCCGGCTTCGCGTTCTCAGCCGAAAAGTGGACGTGAAGCGCGTGGAGCAG
GTGCTTCGCGCAACACCTCCGTTGGCAGCTCTGGTCGTGGATCGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8642:394..1891-

>mRNA_S-dermatodea_contig8642.16790.1 ID=mRNA_S-dermatodea_contig8642.16790.1|Name=mRNA_S-dermatodea_contig8642.16790.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig8642:394..1891- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGCCAGCAGCAGCAGCGATGAAGACGACGACACCGTTCAAGCGTCCGC
GTCAGCTGGAGCGGAGTCCTTCTTCGCCACTTCATCGAGTTCTGCTCTCT
CCCCGCGCGAGCTGGCCGCCGCCCTGTTCATGGCGGAGACGACTGCCGCC
ATCAAGGCTTCCCGTGCAGGAAGGCCTGTGGAACTTTCCGCTTCGTCTCT
GGATTATCAGAGGCGATTCATATTGTCCGCCAGCAGCAGCAGCGATGAAG
ACGACGACACCGTTCAAGCGTCCGCGTCAGCTGGAGCGGAGTCCTTCTTC
GCCACTTCATCGAGTTCTGCTCTCTCCCCGCGCGAGCTGGCCGCCGCCCT
GTTCATGGCGGAGACGACTGCCGCCATCAAGGCTTCCCGTGCAGGAAGGC
CTGTGGAACTTTCCGCTTCGTCTCTGGATTATCAGAGGCGATTCATATTG
CCGAAAAGTGGACGTGAAGCGCGTGGAGCAGGTGCTTCGCGCAACACCTC
CGTTGGCAGCTCTGGTCGTGGATCGGGGCCGAAAAGTGGACGTGAAGCGC
GTGGAGCAGGTGCTTCGCGCAACACCTCCGTTGGCAGCTCTGGTCGTGGA
TCGGGG
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