mRNA_S-dermatodea_contig86416.16789.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86416.16789.1
Unique NamemRNA_S-dermatodea_contig86416.16789.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRKETPLPH 135
            P+   +    +LNFCP+V TLEPGEF+HINKGRLHAFRKE PLPH
Sbjct:  441 PTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPH 485          
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.970e-11
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    1 PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRKETP 126
            P+ S++     LN+CP+V TLEPGEF+HINKGRLHAFRK+ P
Sbjct:  170 PTPSQIESLRDLNYCPSVFTLEPGEFVHINKGRLHAFRKKIP 211          
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: A0A448ZRZ6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRKETP--LPHVSCHF 150
            P+   L    ++ +CP+VL LEPG+ +HINKGRLHAFRK +   LP   CHF
Sbjct:  757 PTKDMLEDCRKMGYCPSVLILEPGDLVHINKGRLHAFRKMSTSGLPDKDCHF 808          
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 23/44 (52.27%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRKETPLP 132
            P+ +++    +  +CP+V TLEPG+++HINKGRLHAFRK +P P
Sbjct:  759 PTETQIDELRRRGYCPSVFTLEPGDYVHINKGRLHAFRKRSPPP 802          
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: K0SQD9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQD9_THAOC)

HSP 1 Score: 58.9 bits (141), Expect = 7.560e-9
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRK--ETPLPHVSCH 147
            P++  +    ++ +CP+V  L+PG+ +HINKGRLHAFRK   +PLP   CH
Sbjct:   45 PTAVSIEECKRMGYCPSVFVLKPGQLVHINKGRLHAFRKLAPSPLPPTDCH 95          
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: A0A1Z5JQ17_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQ17_FISSO)

HSP 1 Score: 58.2 bits (139), Expect = 1.430e-8
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1
Query:    1 PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRK--ETPLPHVSCHF 150
            P  S +    ++N+CP+V  L PG+ +HINKGRLH FRK    PL    CH+
Sbjct: 1389 PKKSVIKKWEEMNYCPSVFVLRPGQHLHINKGRLHTFRKVNSEPLEEDDCHY 1440          
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: A0A7S2NZI7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZI7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.950e-8
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    1 PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRKET--PLPHVSCHF 150
            P+   +S   ++N+CP+V  L+P + +HINKGRLHAFRK     LP   CHF
Sbjct:   35 PTHDVVSRWREMNYCPSVFILKPNQHVHINKGRLHAFRKMRCHALPQDDCHF 86          
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: A0A7S3L187_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L187_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.670e-8
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRK-ETP-LPHVSCH 147
            P+   +S    +N+CP V  L+PG+ IHINKGRLHAFRK ET  LP   CH
Sbjct: 1224 PTVDTVSRWRGMNYCPAVFILKPGQHIHINKGRLHAFRKMETRVLPATDCH 1274          
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: A0A1E7FK00_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK00_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-8
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   31 QLNFCPTVLTLEPGEFIHINKGRLHAFRK--ETPLPHVSC 144
            ++ +CP++LTL PGE IHINKGRLHAFRK   T LP   C
Sbjct:  744 RMGYCPSLLTLGPGELIHINKGRLHAFRKMATTKLPESDC 783          
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Match: A0A1Z5J8B9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8B9_FISSO)

HSP 1 Score: 56.6 bits (135), Expect = 4.990e-8
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    1 PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRKET--PLPHVSCH 147
            P  S ++   ++N+CP+V  L PG+ +HINKGRLH FRK    PL    CH
Sbjct:  502 PKKSVINKWEEMNYCPSVFVLRPGQHLHINKGRLHTFRKVKMEPLEQDDCH 552          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86416.16789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LCL4_ECTSI2.850e-1468.89ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A7S2DKI0_9STRA1.970e-1164.29Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A448ZRZ6_9STRA1.170e-951.92Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2SQY1_9STRA2.180e-952.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K0SQD9_THAOC7.560e-947.06Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1Z5JQ17_FISSO1.430e-846.15Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2NZI7_9STRA1.950e-848.08Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3L187_9STRA2.670e-854.90Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7FK00_9STRA3.650e-862.50Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1Z5J8B9_FISSO4.990e-847.06Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86416contigS-dermatodea_contig86416:194..343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog2880.D8LCL4
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.90558-CDS-S-dermatodea_contig86416:193..3431622925356.90558-CDS-S-dermatodea_contig86416:193..343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86416 194..343 +
1694079878.5168583-CDS-S-dermatodea_contig86416:193..3431694079878.5168583-CDS-S-dermatodea_contig86416:193..343Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86416 194..343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86416.16789.1prot_S-dermatodea_contig86416.16789.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86416 194..343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86416.16789.1

>prot_S-dermatodea_contig86416.16789.1 ID=prot_S-dermatodea_contig86416.16789.1|Name=mRNA_S-dermatodea_contig86416.16789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
PSSSRLSLGHQLNFCPTVLTLEPGEFIHINKGRLHAFRKETPLPHVSCHF
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mRNA from alignment at S-dermatodea_contig86416:194..343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86416.16789.1 ID=mRNA_S-dermatodea_contig86416.16789.1|Name=mRNA_S-dermatodea_contig86416.16789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig86416:194..343+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTCCTCCTCACGACTCTCCCTCGGCCACCAGCTTAATTTTTGCCCGAC CGTGCTGACTCTGGAGCCCGGGGAGTTTATTCACATCAACAAGGGCCGCC TGCACGCCTTTCGGAAGGAAACCCCGCTGCCGCACGTGAGTTGTCATTTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig86416:194..343+

>mRNA_S-dermatodea_contig86416.16789.1 ID=mRNA_S-dermatodea_contig86416.16789.1|Name=mRNA_S-dermatodea_contig86416.16789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig86416:194..343+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTCCTCCTCACGACTCTCCCTCGGCCACCAGCTTAATTTTTGCCCGAC
CGTGCTGACTCTGGAGCCCGGGGAGTTTATTCACATCAACAAGGGCCGCC
TGCACGCCTTTCGGAAGGAAACCCCGCTGCCGCACGTGAGTTGTCATTTT
CCCTCCTCCTCACGACTCTCCCTCGGCCACCAGCTTAATTTTTGCCCGAC
CGTGCTGACTCTGGAGCCCGGGGAGTTTATTCACATCAACAAGGGCCGCC
TGCACGCCTTTCGGAAGGAAACCCCGCTGCCGCACGTGAGTTGTCATTTT
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