mRNA_S-dermatodea_contig86413.16788.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86413.16788.1
Unique NamemRNA_S-dermatodea_contig86413.16788.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86413.16788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86413contigS-dermatodea_contig86413:89..403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size266
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86413.16788.1prot_S-dermatodea_contig86413.16788.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86413 102..312 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.841565-UTR-S-dermatodea_contig86413:88..1011622925356.841565-UTR-S-dermatodea_contig86413:88..101Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86413 89..101 -
1694079878.4729383-UTR-S-dermatodea_contig86413:88..1011694079878.4729383-UTR-S-dermatodea_contig86413:88..101Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86413 89..101 -
1622925356.874901-UTR-S-dermatodea_contig86413:312..4031622925356.874901-UTR-S-dermatodea_contig86413:312..403Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86413 313..403 -
1694079878.5049374-UTR-S-dermatodea_contig86413:312..4031694079878.5049374-UTR-S-dermatodea_contig86413:312..403Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86413 313..403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.8563836-CDS-S-dermatodea_contig86413:101..1561622925356.8563836-CDS-S-dermatodea_contig86413:101..156Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86413 102..156 -
1694079878.483312-CDS-S-dermatodea_contig86413:101..1561694079878.483312-CDS-S-dermatodea_contig86413:101..156Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86413 102..156 -
1622925356.8662822-CDS-S-dermatodea_contig86413:205..3121622925356.8662822-CDS-S-dermatodea_contig86413:205..312Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86413 206..312 -
1694079878.49393-CDS-S-dermatodea_contig86413:205..3121694079878.49393-CDS-S-dermatodea_contig86413:205..312Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86413 206..312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86413.16788.1

>prot_S-dermatodea_contig86413.16788.1 ID=prot_S-dermatodea_contig86413.16788.1|Name=mRNA_S-dermatodea_contig86413.16788.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
MKSWLTTKERAQHREISSLLTVISCNNSSSSSSKQHVSSGLPSGAVIVSA
STK*
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mRNA from alignment at S-dermatodea_contig86413:89..403-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86413.16788.1 ID=mRNA_S-dermatodea_contig86413.16788.1|Name=mRNA_S-dermatodea_contig86413.16788.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at S-dermatodea_contig86413:89..403- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTATACGGGCCCTCAATCGTCCCCGTCTGCGGGCATTCGTCCCCGTTC
GCGGGCCCCCGTCACGTCCCCGTCCTCGGGTCACCGCTCTGATGAAGAGT
TGGTTGACTACGAAGGAGCGGGCCCAACACAGAGAGATCAGTTCACTGCT
TACTGTGATTAGTTGCAACAACAGCAGCAGCAGCAGCAGCAAGCAGCAGC
CACAGCAGCATCAACTCTTCCCCCGCGTCTCCTCTGTGGGCTTTCAGCGT
CTCTTCTGGGCTTCCCAGCGGCGCTGTCATTGTAAGTGCAAGTACAAAAT
AGTGTGGTTGATCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig86413:89..403-

>mRNA_S-dermatodea_contig86413.16788.1 ID=mRNA_S-dermatodea_contig86413.16788.1|Name=mRNA_S-dermatodea_contig86413.16788.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig86413:89..403- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGAGTTGGTTGACTACGAAGGAGCGGGCCCAACACAGAGAGATCAG
TTCACTGCTTACTGTGATTAGTTGCAACAACAGCAGCAGCAGCAGCAGCA
AGCAGCAATGAAGAGTTGGTTGACTACGAAGGAGCGGGCCCAACACAGAG
AGATCAGTTCACTGCTTACTGTGATTAGTTGCAACAACAGCAGCAGCAGC
AGCAGCAAGCAGCACGTCTCTTCTGGGCTTCCCAGCGGCGCTGTCATTGT
AAGTGCAAGTACAAAATAGCGTCTCTTCTGGGCTTCCCAGCGGCGCTGTC
ATTGTAAGTGCAAGTACAAAATAG
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