mRNA_S-dermatodea_contig864.16786.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig864.16786.1
Unique NamemRNA_S-dermatodea_contig864.16786.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6H5K541_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K541_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.940e-26
Identity = 58/145 (40.00%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 GMRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEAR--------------------LPIREGGYGLTSSADIRDAAF 375
            GM ++G P+GTE + QR FV +  +G  AEL+R L+T++D QAS+Q+LRLS   R   +LR + P IT     + D+L+ W ++ I+ G  A+  G+P+ +E R                    LPIREGG G+TSS  IR++AF
Sbjct:  125 GMAIVGVPVGTECF-QRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 268
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BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.760e-24
Identity = 58/145 (40.00%), Postives = 85/145 (58.62%), Query Frame = 1 
Query:    1 GMRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEAR--------------------LPIREGGYGLTSSADIRDAAF 375
            GM ++G P+GTE + QR FV +  +G  AEL+R L+T++D QAS+Q+LRLS   R   +LR + P IT     + D+L+ W ++ I+ G  A+  G+P+ +E R                    LPIREGG G+TSS  IR++AF
Sbjct:  426 GMAIVGVPVGTECF-QRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLGITSSVLIRESAF 569
[Close]
BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 106 bits (264), Expect = 3.730e-24
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:    1 GMRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLP-------SPD------------EARLPIREGGYGLTSSADIRDAAF 375
            GMR++G P+G EP + +R   D+ +GE  +LL+ +A+++DAQAS Q+LR SAA R +F+LR++PPD+TK    +FD  +E  L +I+ GP       P       SP             +ARLP+REGG G+ S+ DI   AF
Sbjct: 1461 GMRIVGVPVG-EPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETILNGPSQPGEHAPHEPTEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAF 1603
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BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6H5JL76_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL76_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.510e-23
Identity = 56/145 (38.62%), Postives = 82/145 (56.55%), Query Frame = 1 
Query:    1 GMRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEAR--------------------LPIREGGYGLTSSADIRDAAF 375
            GM ++G P+GTE + QR FV +  +G  AEL+R L+T++D QAS+Q+LRLS   R   +LR   P IT     + D+L+ W ++ I+ G  A+  G+P+ +E R                    LPIREGG  +T S  IR++AF
Sbjct:   92 GMAIVGVPVGTECF-QRSFVTNFARGNPAELIRRLSTLDDPQASYQLLRLSGVPRLFHLLRTTAPSITSTAAREHDNLMIWAVSKIVLGKMANTVGIPTVEEVRANPEKSEVDFFKDSARAQVHLPIREGGLRITCSVLIRESAF 235
[Close]
BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6H5KFL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 9.770e-23
Identity = 54/145 (37.24%), Postives = 84/145 (57.93%), Query Frame = 1 
Query:    4 MRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEAR---------------------LPIREGGYGLTSSADIRDAAF 375
            M V+G P+GTE + QR FV+ + +G+ AEL+  LAT++D QAS+Q+LRLS   R   +LR + P IT +  +  D+++ W ++ I+ G  A +  +P+  E R                     LP+REGG G+TS+  IR++AF
Sbjct:    1 MPVVGIPVGTEEF-QRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 144
[Close]
BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6H5JLD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 6.170e-22
Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = 1 
Query:    1 GMRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEAR---------------------LPIREGGYGLTSSADIRDAAF 375
            GM V+G P GTE + QR FV+ + +G+ AEL+  LAT++D QAS+Q+LRLS   R   +LR + P IT +  +  D+++ W ++ I+ G  A +  +P+  E R                     LP+REGG G+TS+  IR++AF
Sbjct:   92 GMPVVGIPAGTEEF-QRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 236
[Close]
BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.290e-21
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = 1 
Query:    1 GMRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEAR---------------------LPIREGGYGLTSSADIRDAAF 375
            GM V+G P+GTE + QR FV+ + +G+ AEL+  LAT++D QAS+Q+LRLS   R   +LR + P IT +  +  D+++ W ++ I+ G  A +  +P+  E R                     LP+REGG G+TS+  IR++AF
Sbjct:  426 GMPVVGIPVGTEEF-QRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 570
[Close]
BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.320e-21
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = 1 
Query:    1 GMRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEAR---------------------LPIREGGYGLTSSADIRDAAF 375
            GM V+G P+GTE + QR FV+ + +G+ AEL+  LAT++D QAS+Q+LRLS   R   +LR + P IT +  +  D+++ W ++ I+ G  A +  +P+  E R                     LP+REGG G+TS+  IR++AF
Sbjct:  426 GMPVVGIPVGTEEF-QRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 570
[Close]
BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.330e-21
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = 1 
Query:    1 GMRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEAR---------------------LPIREGGYGLTSSADIRDAAF 375
            GM V+G P+GTE + QR FV+ + +G+ AEL+  LAT++D QAS+Q+LRLS   R   +LR + P IT +  +  D+++ W ++ I+ G  A +  +P+  E R                     LP+REGG G+TS+  IR++AF
Sbjct:  274 GMPVVGIPVGTEEF-QRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 418
[Close]
BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.410e-21
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = 1 
Query:    1 GMRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLSAAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPDEAR---------------------LPIREGGYGLTSSADIRDAAF 375
            GM V+G P+GTE + QR FV+ + +G+ AEL+  LAT++D QAS+Q+LRLS   R   +LR + P IT +  +  D+++ W ++ I+ G  A +  +P+  E R                     LP+REGG G+TS+  IR++AF
Sbjct:   92 GMPVVGIPVGTEEF-QRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFQLLRTIAPSITNSAAKIHDNMMMWAMSKIVLGKMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAF 236
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig864.16786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5K541_9PHAE8.940e-2640.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGJ4_9PHAE1.760e-2440.00Reverse transcriptase domain-containing protein n=... [more]
A0A6P0N5L4_9CYAN3.730e-2440.97Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5JL76_9PHAE3.510e-2338.62Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFL6_9PHAE9.770e-2337.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLD7_9PHAE6.170e-2237.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCM0_9PHAE1.290e-2137.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE1.320e-2137.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H0_9PHAE1.330e-2137.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKJ7_9PHAE2.410e-2137.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig864contigS-dermatodea_contig864:20509..20946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig864.16786.1prot_S-dermatodea_contig864.16786.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig864 20512..20946 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.6777802-UTR-S-dermatodea_contig864:20508..205111622925356.6777802-UTR-S-dermatodea_contig864:20508..20511Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig864 20509..20511 +
1694079878.3483677-UTR-S-dermatodea_contig864:20508..205111694079878.3483677-UTR-S-dermatodea_contig864:20508..20511Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig864 20509..20511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.691096-CDS-S-dermatodea_contig864:20511..208141622925356.691096-CDS-S-dermatodea_contig864:20511..20814Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig864 20512..20814 +
1694079878.3591049-CDS-S-dermatodea_contig864:20511..208141694079878.3591049-CDS-S-dermatodea_contig864:20511..20814Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig864 20512..20814 +
1622925356.7025592-CDS-S-dermatodea_contig864:20877..209461622925356.7025592-CDS-S-dermatodea_contig864:20877..20946Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig864 20878..20946 +
1694079878.3694427-CDS-S-dermatodea_contig864:20877..209461694079878.3694427-CDS-S-dermatodea_contig864:20877..20946Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig864 20878..20946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig864.16786.1

>prot_S-dermatodea_contig864.16786.1 ID=prot_S-dermatodea_contig864.16786.1|Name=mRNA_S-dermatodea_contig864.16786.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=124bp
MRVLGEPIGTEPYHQRRFVNDLLQGESAELLRALATMEDAQASFQVLRLS
AAVRTSFILRNVPPDITKAPMEDFDSLLEWCLASIIAGPGASAAGLPSPD
EARLPIREGGYGLTSSADIRDAAF
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mRNA from alignment at S-dermatodea_contig864:20509..20946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig864.16786.1 ID=mRNA_S-dermatodea_contig864.16786.1|Name=mRNA_S-dermatodea_contig864.16786.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig864:20509..20946+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCATGAGAGTCCTGGGGGAACCGATTGGTACCGAGCCATACCACCAGCG
GAGGTTCGTCAATGACCTGTTGCAAGGGGAATCGGCAGAGCTCCTACGCG
CCCTCGCGACGATGGAGGACGCACAGGCAAGCTTCCAGGTGTTACGGCTA
TCGGCCGCCGTTCGCACCTCATTTATTCTGCGCAACGTCCCCCCGGATAT
CACAAAAGCTCCGATGGAAGATTTCGACAGCTTGCTTGAGTGGTGTCTCG
CGTCCATCATCGCTGGCCCGGGGGCGAGCGCTGCAGGACTACCTTCTCCC
GACGAAGTCCGCGAAAACCCGTCTGCCCATCGCTGACAGCCCATGCTGGG
GAAAGACGCCATAACTAAGGCACGACTTCCCATCCGAGAAGGCGGGTACG
GATTGACCAGCAGCGCCGATATCCGCGACGCTGCCTTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig864:20509..20946+

>mRNA_S-dermatodea_contig864.16786.1 ID=mRNA_S-dermatodea_contig864.16786.1|Name=mRNA_S-dermatodea_contig864.16786.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at S-dermatodea_contig864:20509..20946+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGAGTCCTGGGGGAACCGATTGGTACCGAGCCATACCACCAGCGGAG
GTTCGTCAATGACCTGTTGCAAGGGGAATCGGCAGAGCTCCTACGCGCCC
TCGCGACGATGGAGGACGCACAGGCAAGCTTCCAGGTGTTACGGCTATCG
GCCGCCGTTCGCACCTCATTTATTCTGCGCAACGTCCCCCCGGATATCAC
AAAAGCTCCGATGGAAGATTTCGACAGCTTGCTTGAGTGGTGTCTCGCGT
CCATCATCGCTGGCCCGGGGGCGAGCGCTGCAGGACTACCTTCTCCCGAC
GAAATGAGAGTCCTGGGGGAACCGATTGGTACCGAGCCATACCACCAGCG
GAGGTTCGTCAATGACCTGTTGCAAGGGGAATCGGCAGAGCTCCTACGCG
CCCTCGCGACGATGGAGGACGCACAGGCAAGCTTCCAGGTGTTACGGCTA
TCGGCCGCCGTTCGCACCTCATTTATTCTGCGCAACGTCCCCCCGGATAT
CACAAAAGCTCCGATGGAAGATTTCGACAGCTTGCTTGAGTGGTGTCTCG
CGTCCATCATCGCTGGCCCGGGGGCGAGCGCTGCAGGACTACCTTCTCCC
GACGAAGCACGACTTCCCATCCGAGAAGGCGGGTACGGATTGACCAGCAG
CGCCGATATCCGCGACGCTGCCTTCGCACGACTTCCCATCCGAGAAGGCG
GGTACGGATTGACCAGCAGCGCCGATATCCGCGACGCTGCCTTC
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