mRNA_S-dermatodea_contig86368.16784.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86368.16784.1
Unique NamemRNA_S-dermatodea_contig86368.16784.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86368.16784.1 vs. uniprot
Match: A0A6H5L6S1_9PHAE (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.040e-12
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 QEHFHDRLNWKSESSLRRTPAWKSSVRRTLAHHASF 108
            +EHFH+RLNW+SESSLRRTPAWK+SVRRTLAHH  F
Sbjct:  305 EEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMF 340
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BLAST of mRNA_S-dermatodea_contig86368.16784.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.200e-12
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 QEHFHDRLNWKSESSLRRTPAWKSSVRRTLAHHASF 108
            +EHFH+RLNW+SESSLRRTPAWK+SVRRTLAHH  F
Sbjct:  583 EEHFHERLNWRSESSLRRTPAWKASVRRTLAHHPMF 618
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BLAST of mRNA_S-dermatodea_contig86368.16784.1 vs. uniprot
Match: A0A2R5GGC4_9STRA (Inhibitor of growth protein 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGC4_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 6.640e-5
Identity = 22/36 (61.11%), Postives = 24/36 (66.67%), Query Frame = 1 
Query:    1 QEHFHDRLNWKSESSLRRTPAWKSSVRRTLAHHASF 108
            +E F D LNWK ES  RRTP WKSSVR+ L  H  F
Sbjct:  486 EERFADNLNWKPESENRRTPVWKSSVRKILISHNRF 521
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86368.16784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L6S1_9PHAE1.040e-1283.33SGF29 C-terminal domain-containing protein n=1 Tax... [more]
D7FGV9_ECTSI1.200e-1283.33SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A2R5GGC4_9STRA6.640e-561.11Inhibitor of growth protein 3 n=1 Tax=Hondaea ferm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86368contigS-dermatodea_contig86368:454..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog2880.D7FGV9
KEGG koko:K03246,ko:K11364
KEGG Pathwayko03013,map03013
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051276,GO:0071704,GO:0071840,GO:1901564
EggNOG free text desc.methylated histone binding
EggNOG OGsKOG3038@1,KOG3038@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSGF29 tudor-like domain
Ec32 orthologEc-11_000840.2
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.4880154-CDS-S-dermatodea_contig86368:453..5611622925356.4880154-CDS-S-dermatodea_contig86368:453..561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86368 454..561 -
1694079878.2231343-CDS-S-dermatodea_contig86368:453..5611694079878.2231343-CDS-S-dermatodea_contig86368:453..561Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86368 454..561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86368.16784.1prot_S-dermatodea_contig86368.16784.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86368 454..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86368.16784.1

>prot_S-dermatodea_contig86368.16784.1 ID=prot_S-dermatodea_contig86368.16784.1|Name=mRNA_S-dermatodea_contig86368.16784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=36bp
QEHFHDRLNWKSESSLRRTPAWKSSVRRTLAHHASF
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mRNA from alignment at S-dermatodea_contig86368:454..561-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86368.16784.1 ID=mRNA_S-dermatodea_contig86368.16784.1|Name=mRNA_S-dermatodea_contig86368.16784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at S-dermatodea_contig86368:454..561- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGCACTTCCACGACCGCCTGAACTGGAAGAGCGAGTCCAGCCTCCG
CCGGACCCCTGCATGGAAGTCCTCGGTCCGCCGCACCCTCGCACATCACG
CCAGCTTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig86368:454..561-

>mRNA_S-dermatodea_contig86368.16784.1 ID=mRNA_S-dermatodea_contig86368.16784.1|Name=mRNA_S-dermatodea_contig86368.16784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig86368:454..561- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGCACTTCCACGACCGCCTGAACTGGAAGAGCGAGTCCAGCCTCCG
CCGGACCCCTGCATGGAAGTCCTCGGTCCGCCGCACCCTCGCACATCACG
CCAGCTTTCAGGAGCACTTCCACGACCGCCTGAACTGGAAGAGCGAGTCC
AGCCTCCGCCGGACCCCTGCATGGAAGTCCTCGGTCCGCCGCACCCTCGC
ACATCACGCCAGCTTT
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