mRNA_S-dermatodea_contig8636.16782.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8636.16782.1
Unique NamemRNA_S-dermatodea_contig8636.16782.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8636.16782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8636contigS-dermatodea_contig8636:2206..2707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.4140015-CDS-S-dermatodea_contig8636:2205..27061622925356.4140015-CDS-S-dermatodea_contig8636:2205..2706Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8636 2206..2706 +
1694079878.2025664-CDS-S-dermatodea_contig8636:2205..27061694079878.2025664-CDS-S-dermatodea_contig8636:2205..2706Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8636 2206..2706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8636.16782.1prot_S-dermatodea_contig8636.16782.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8636 2206..2706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8636.16782.1

>prot_S-dermatodea_contig8636.16782.1 ID=prot_S-dermatodea_contig8636.16782.1|Name=mRNA_S-dermatodea_contig8636.16782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=167bp
EVSGDLAGGGSWSLATRSAGCRLAGGQAGASEASFPPSSQSSSCFSCTHS
ASTSRASSSQSINTSPVLRSTARFSSSPAPAPATVSSGPAITTDKSVSFA
REAPPPPPPPQPPSSTVFSISRAPGFPAVPRPAGAESGPSTLSLSFSFAP
ASAGGCSAASSPARLFS
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mRNA from alignment at S-dermatodea_contig8636:2206..2707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8636.16782.1 ID=mRNA_S-dermatodea_contig8636.16782.1|Name=mRNA_S-dermatodea_contig8636.16782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=502bp|location=Sequence derived from alignment at S-dermatodea_contig8636:2206..2707+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGTTTCTGGCGACTTGGCGGGCGGCGGAAGTTGGTCTCTTGCCACGCG
ATCCGCGGGCTGCCGCTTAGCGGGGGGGCAAGCGGGGGCAAGCGAGGCGT
CGTTTCCGCCGTCGTCACAGTCGTCGTCCTGCTTCTCCTGCACCCACTCG
GCTTCCACCTCCCGTGCGAGCTCTTCCCAGTCCATCAATACTTCCCCCGT
TTTACGCTCGACGGCGAGATTTTCGTCTTCGCCCGCGCCCGCTCCGGCGA
CGGTAAGCTCCGGTCCCGCGATAACGACGGATAAGTCTGTCTCCTTCGCC
AGGGAAGCACCACCACCACCGCCACCACCACAACCACCATCCTCGACCGT
TTTCTCGATTTCTCGAGCGCCCGGGTTTCCAGCAGTACCGAGGCCGGCAG
GAGCGGAGAGTGGACCATCAACGTTATCTTTATCGTTCTCGTTTGCGCCG
GCGTCGGCGGGGGGTTGCTCCGCCGCGTCCTCTCCCGCTCGACTCTTCTC
GC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8636:2206..2707+

>mRNA_S-dermatodea_contig8636.16782.1 ID=mRNA_S-dermatodea_contig8636.16782.1|Name=mRNA_S-dermatodea_contig8636.16782.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at S-dermatodea_contig8636:2206..2707+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGTTTCTGGCGACTTGGCGGGCGGCGGAAGTTGGTCTCTTGCCACGCG
ATCCGCGGGCTGCCGCTTAGCGGGGGGGCAAGCGGGGGCAAGCGAGGCGT
CGTTTCCGCCGTCGTCACAGTCGTCGTCCTGCTTCTCCTGCACCCACTCG
GCTTCCACCTCCCGTGCGAGCTCTTCCCAGTCCATCAATACTTCCCCCGT
TTTACGCTCGACGGCGAGATTTTCGTCTTCGCCCGCGCCCGCTCCGGCGA
CGGTAAGCTCCGGTCCCGCGATAACGACGGATAAGTCTGTCTCCTTCGCC
AGGGAAGCACCACCACCACCGCCACCACCACAACCACCATCCTCGACCGT
TTTCTCGATTTCTCGAGCGCCCGGGTTTCCAGCAGTACCGAGGCCGGCAG
GAGCGGAGAGTGGACCATCAACGTTATCTTTATCGTTCTCGTTTGCGCCG
GCGTCGGCGGGGGGTTGCTCCGCCGCGTCCTCTCCCGCTCGACTCTTCTC
GGAGGTTTCTGGCGACTTGGCGGGCGGCGGAAGTTGGTCTCTTGCCACGC
GATCCGCGGGCTGCCGCTTAGCGGGGGGGCAAGCGGGGGCAAGCGAGGCG
TCGTTTCCGCCGTCGTCACAGTCGTCGTCCTGCTTCTCCTGCACCCACTC
GGCTTCCACCTCCCGTGCGAGCTCTTCCCAGTCCATCAATACTTCCCCCG
TTTTACGCTCGACGGCGAGATTTTCGTCTTCGCCCGCGCCCGCTCCGGCG
ACGGTAAGCTCCGGTCCCGCGATAACGACGGATAAGTCTGTCTCCTTCGC
CAGGGAAGCACCACCACCACCGCCACCACCACAACCACCATCCTCGACCG
TTTTCTCGATTTCTCGAGCGCCCGGGTTTCCAGCAGTACCGAGGCCGGCA
GGAGCGGAGAGTGGACCATCAACGTTATCTTTATCGTTCTCGTTTGCGCC
GGCGTCGGCGGGGGGTTGCTCCGCCGCGTCCTCTCCCGCTCGACTCTTCT
CG
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