mRNA_S-dermatodea_contig86341.16781.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86341.16781.1
Unique NamemRNA_S-dermatodea_contig86341.16781.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: D8LTT3_ECTSI (Eukaryotic translation initiation factor 4E-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTT3_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 7.620e-24
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 ENMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSNDHSTAAR 150
            ENMVLGLVGET+DVGDEICGARVVDKSK NH VYRFELWLRSND +TAAR
Sbjct:  115 ENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAAR 164
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: A0A835ZBP0_9STRA (Eukaryotic translation initiation factor 4E-like 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.340e-16
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 ENMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSNDHSTAAR 150
            E++VLGL+GETID  DEICGARVVDKS+G    YRFELWLR+ +  T AR
Sbjct:  116 ESLVLGLIGETIDWADEICGARVVDKSRGKDTYYRFELWLRAREPGTTAR 165
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: A0A2R5GD67_9STRA (Eukaryotic translation initiation factor 4E n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD67_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.650e-13
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 ENMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSND 132
            E ++LGLVGETID GDEICG RVVDKSK N   YR E+W RS D
Sbjct:  117 EKLLLGLVGETIDNGDEICGVRVVDKSKSNRPTYRLEMWFRSRD 160
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: A0A7S0HHF8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHF8_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 6.140e-13
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 ENMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSNDHSTA 144
            +++VLG+VGETID  DEICGARVVDKS G   +YR ELW R  D + A
Sbjct:  168 QDLVLGMVGETIDPADEICGARVVDKSSGTRCMYRLELWFRKKDETIA 215
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: R1BIV2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BIV2_EMIHU)

HSP 1 Score: 68.2 bits (165), Expect = 7.380e-13
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 NMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSND 132
            ++VLG++GET+D GDEICGARVVDKS     +YR ELW R ND
Sbjct:  114 HIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKND 156
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: A0A7S3EX75_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EX75_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 1.970e-12
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 ENMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSNDHSTA 144
            +N+ LG++GETID GDEICGARVVDK  G   +YR ELW +  D   A
Sbjct:  131 QNLALGMIGETIDHGDEICGARVVDKCAGGRCMYRLELWFKKKDQGIA 178
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: R1DXY0_EMIHU (Monogalactosyldiacylglycerol synthase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DXY0_EMIHU)

HSP 1 Score: 68.2 bits (165), Expect = 4.390e-12
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 NMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSND 132
            ++VLG++GET+D GDEICGARVVDKS     +YR ELW R ND
Sbjct:  538 HIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKND 580
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: A0A7S3HCL6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCL6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.100e-11
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 ENMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSNDHS 138
            EN+V+GL+GETID GDEICG RVV++++     Y+ ELWLR+ D S
Sbjct:  125 ENLVMGLIGETIDEGDEICGCRVVNQTRKGKPTYKIELWLRTTDES 170
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: A0A7S2CNW6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CNW6_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 1.330e-11
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    4 NMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSNDHSTA 144
            ++VLG++GETID  D+ICGARVVDKS G   +YR ELW +  D + A
Sbjct:  124 DLVLGMIGETIDPADDICGARVVDKSSGTRQMYRLELWFKRKDDAVA 170
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BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Match: A0A7S2XVT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVT5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.350e-11
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 ENMVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSND 132
            EN+++G++GETID  D I GARVVDKSKG   VY+ ELW++S +
Sbjct:  114 ENLLMGIIGETIDWADHISGARVVDKSKGTRAVYKLELWVKSKE 157
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86341.16781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LTT3_ECTSI7.620e-2490.00Eukaryotic translation initiation factor 4E-like 1... [more]
A0A835ZBP0_9STRA6.340e-1668.00Eukaryotic translation initiation factor 4E-like 1... [more]
A0A2R5GD67_9STRA1.650e-1370.45Eukaryotic translation initiation factor 4E n=1 Ta... [more]
A0A7S0HHF8_9EUKA6.140e-1362.50Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
R1BIV2_EMIHU7.380e-1365.12Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S3EX75_9EUKA1.970e-1258.33Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
R1DXY0_EMIHU4.390e-1265.12Monogalactosyldiacylglycerol synthase n=1 Tax=Emil... [more]
A0A7S3HCL6_9STRA1.100e-1158.70Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2CNW6_9EUKA1.330e-1157.45Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S2XVT5_9STRA3.350e-1159.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86341contigS-dermatodea_contig86341:433..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D8LTT3
KEGG rclassRC00005,RC00059
KEGG koko:K03259,ko:K03715,ko:K07521
KEGG ReactionR02691
KEGG Pathwayko00561,ko01100,ko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04360,ko04910,map00561,map01100,map01521,map03013,map04066,map04150,map04151,map04211,map04360,map04910
KEGG ModuleM00428
GOsGO:0000082,GO:0000278,GO:0000339,GO:0000340,GO:0000932,GO:0001662,GO:0002209,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0007049,GO:0007275,GO:0007346,GO:0007399,GO:0007610,GO:0008134,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009410,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010721,GO:0014070,GO:0016281,GO:0016442,GO:0017148,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0022008,GO:0022402,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031332,GO:0031369,GO:0031370,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033391,GO:0033555,GO:0033993,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0042596,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045787,GO:0045931,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051384,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065007,GO:0070491,GO:0070887,GO:0071310,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0080090,GO:0097159,GO:0097327,GO:0098727,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903047,GO:1990904,GO:2000026,GO:2000112,GO:2000113
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1670@2759
EC2.4.1.46
COG Functional cat.J
CAZyGT28
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03012,ko03019,ko04516
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptioneukaryotic translation initiation factor 4E- like 1
Ec32 orthologEc-28_002900.1
Exons1
Model size153
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.3592546-CDS-S-dermatodea_contig86341:432..5791622925356.3592546-CDS-S-dermatodea_contig86341:432..579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86341 433..579 -
1694079878.1818707-CDS-S-dermatodea_contig86341:432..5791694079878.1818707-CDS-S-dermatodea_contig86341:432..579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86341 433..579 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.3761904-UTR-S-dermatodea_contig86341:579..5851622925356.3761904-UTR-S-dermatodea_contig86341:579..585Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86341 580..585 -
1694079878.1935887-UTR-S-dermatodea_contig86341:579..5851694079878.1935887-UTR-S-dermatodea_contig86341:579..585Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86341 580..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86341.16781.1prot_S-dermatodea_contig86341.16781.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86341 433..579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86341.16781.1

>prot_S-dermatodea_contig86341.16781.1 ID=prot_S-dermatodea_contig86341.16781.1|Name=mRNA_S-dermatodea_contig86341.16781.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=49bp
MVLGLVGETIDVGDEICGARVVDKSKGNHVVYRFELWLRSNDHSTAAR*
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mRNA from alignment at S-dermatodea_contig86341:433..585-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86341.16781.1 ID=mRNA_S-dermatodea_contig86341.16781.1|Name=mRNA_S-dermatodea_contig86341.16781.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at S-dermatodea_contig86341:433..585- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAACATGGTGCTTGGCCTGGTCGGGGAGACGATCGACGTAGGGGACGA
GATTTGCGGGGCGAGGGTTGTGGACAAGAGCAAGGGTAACCATGTCGTGT
ACCGTTTCGAGCTTTGGTTGAGGAGTAACGACCACAGCACCGCGGCCAGG
TGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig86341:433..585-

>mRNA_S-dermatodea_contig86341.16781.1 ID=mRNA_S-dermatodea_contig86341.16781.1|Name=mRNA_S-dermatodea_contig86341.16781.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at S-dermatodea_contig86341:433..585- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCTTGGCCTGGTCGGGGAGACGATCGACGTAGGGGACGAGATTTG
CGGGGCGAGGGTTGTGGACAAGAGCAAGGGTAACCATGTCGTGTACCGTT
TCGAGCTTTGGTTGAGGAGTAACGACCACAGCACCGCGGCCAGGTGAATG
GTGCTTGGCCTGGTCGGGGAGACGATCGACGTAGGGGACGAGATTTGCGG
GGCGAGGGTTGTGGACAAGAGCAAGGGTAACCATGTCGTGTACCGTTTCG
AGCTTTGGTTGAGGAGTAACGACCACAGCACCGCGGCCAGGTGA
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