mRNA_S-dermatodea_contig12741.1678.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12741.1678.1
Unique NamemRNA_S-dermatodea_contig12741.1678.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: A0A6H5JD73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD73_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 5.560e-58
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1 
Query:    1 MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGLHDILYPSVGSEDAGGICSAG 375
            MFGVGGGIVKGPLMLEMGVHP V++STSAVMIL+TSFTATTSF VFGL+  DYAVPLFFLGLVATA+GQ GTDYL+ KF+RPSFIILSI SVVALSA LMG NGL+DIL+P+ G ++  GICSAG
Sbjct:  380 MFGVGGGIVKGPLMLEMGVHPMVSSSTSAVMILFTSFTATTSFVVFGLLTFDYAVPLFFLGLVATAMGQYGTDYLINKFKRPSFIILSIASVVALSAFLMGINGLYDILHPTAGGDEEDGICSAG 504
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: A0A836CFF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFF2_9STRA)

HSP 1 Score: 157 bits (396), Expect = 7.220e-46
Identity = 81/125 (64.80%), Postives = 103/125 (82.40%), Query Frame = 1 
Query:    1 MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGLHDILYPSVGSEDAGGICSAG 375
            +FGVGGGIVKGPLMLEMGVHP VA++TSA MIL+TSFTATTSF VFGL++ DYA  +F +GL+AT VGQ G +YLV+++QR S II+SIG+VVALSALLMG   L+ + +P    +++GG C+AG
Sbjct:   99 LFGVGGGIVKGPLMLEMGVHPKVASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQ-DDESGGFCAAG 222
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: A0A835ZGS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA)

HSP 1 Score: 157 bits (396), Expect = 5.000e-43
Identity = 81/125 (64.80%), Postives = 103/125 (82.40%), Query Frame = 1 
Query:    1 MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGLHDILYPSVGSEDAGGICSAG 375
            +FGVGGGIVKGPLMLEMGVHP VA++TSA MIL+TSFTATTSF VFGL++ DYA  +F +GL+AT VGQ G +YLV+++QR S II+SIG+VVALSALLMG   L+ + +P    +++GG C+AG
Sbjct:  399 LFGVGGGIVKGPLMLEMGVHPKVASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQ-DDESGGFCAAG 522
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: A0A7R9YCQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCQ0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.110e-42
Identity = 76/105 (72.38%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    1 MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGL 315
            MFGVGGGIVKGPLMLEMGVHP VA++TSA MILYTSFTAT+SF  FG++K DYA+ LFF+GLVATA GQ G +YL+KK++R S IILSIGSVV+LS ++MG   L
Sbjct:  145 MFGVGGGIVKGPLMLEMGVHPAVASATSACMILYTSFTATSSFIAFGMVKYDYAIFLFFVGLVATAAGQLGVNYLIKKYKRQSLIILSIGSVVSLSTVMMGGQSL 249
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: A0A7S1DAC9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAC9_CYCTE)

HSP 1 Score: 131 bits (330), Expect = 4.670e-37
Identity = 71/122 (58.20%), Postives = 87/122 (71.31%), Query Frame = 1 
Query:    1 MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGLHDILYPSVGSEDAGGIC 366
            MFG+GGGIVKGPLML MGVHP V++++SA MIL+TSFTATTSF VFGL+  DYA     +G VAT  GQ G +YL+K++QR S+I  SIG VV LSA LM    L  +   S  S  +GG+C
Sbjct:    7 MFGIGGGIVKGPLMLAMGVHPAVSSASSACMILFTSFTATTSFVVFGLLVPDYAAVCLVIGFVATYAGQIGLNYLMKRYQRNSYIAFSIGGVVLLSAFLMTIQSLVSMAESS--SHHSGGVC 126
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: A0A836CA50_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA50_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.250e-36
Identity = 72/122 (59.02%), Postives = 90/122 (73.77%), Query Frame = 1 
Query:    1 MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGLHDILYPSVGSEDAGGIC 366
            +FGVGGGI+KGPLMLEMGV P VA++TSA MILYTSFTATTSF  FGL++ DY   L  +GL+ATAVGQ    +LVK++QR S IIL IG VVA+S +L+ +  + D+L     S  +GG C
Sbjct:  282 LFGVGGGIIKGPLMLEMGVLPQVASATSACMILYTSFTATTSFLAFGLLRRDYGTLLLVVGLLATAVGQLLVSHLVKRYQRSSLIILIIGGVVAISTVLLATTSIEDLLGHGATSRASGGFC 403
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: D7FV47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV47_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 5.140e-36
Identity = 64/103 (62.14%), Postives = 84/103 (81.55%), Query Frame = 1 
Query:   67 VAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGLHDILYPSVGSEDAGGICSAG 375
            VA++TSAVMILYTSFTATTSF VFGL++ DYA+ LF +GL ATAVGQ   ++LVKK++R SFI+LSIG+VVALSA++MG + L++ ++P+   E  GG CS G
Sbjct:    2 VASATSAVMILYTSFTATTSFMVFGLLEEDYAIALFVVGLAATAVGQVVVNHLVKKYKRTSFIVLSIGAVVALSAVMMGGHSLYNFMFPNPDEEGGGGFCSVG 104
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: A0A4D9D1X1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X1_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.790e-36
Identity = 76/125 (60.80%), Postives = 92/125 (73.60%), Query Frame = 1 
Query:    1 MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGLHDILY-PSVGSEDAGGICSA 372
            MFGVGGGIVKGPLMLEMGV P VAA++SA MIL+TSFTATTSF +F L+  DYAV LF +G + T+VGQ G  YL+K++ R S+II SIG+VV LSALLMG   +  +   P  G +  G IC A
Sbjct:  398 MFGVGGGIVKGPLMLEMGVDPQVAAASSACMILFTSFTATTSFYIFDLLIYDYAVWLFIIGFLFTSVGQYGLSYLMKRYNRNSYIIFSIGAVVGLSALLMGLQSIISLFSGPGSGGKAGGAICDA 522
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: A0A7S4DAW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAW5_HETAK)

HSP 1 Score: 137 bits (345), Expect = 1.000e-35
Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    1 MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGLHDILYPSVGS 345
            MFGVGGGIVKGPLMLEMGV P VA++TSAVMILYTSF+A TSF VFGL++ DY   LF +G++ TAVGQ G +YLVKK  R S+II+SIG+VVALS  +MG       +  ++GS
Sbjct:  370 MFGVGGGIVKGPLMLEMGVAPAVASATSAVMILYTSFSAATSFVVFGLLRYDYGFMLFVVGIICTAVGQVGVNYLVKKSGRGSYIIMSIGAVVALSTAMMGLQSAMAFVNGTMGS 484
[Close]
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Match: A0A6V1T5B1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T5B1_HETAK)

HSP 1 Score: 137 bits (345), Expect = 1.280e-35
Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    1 MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIKADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLMGSNGLHDILYPSVGS 345
            MFGVGGGIVKGPLMLEMGV P VA++TSAVMILYTSF+A TSF VFGL++ DY   LF +G++ TAVGQ G +YLVKK  R S+II+SIG+VVALS  +MG       +  ++GS
Sbjct:  393 MFGVGGGIVKGPLMLEMGVAPAVASATSAVMILYTSFSAATSFVVFGLLRYDYGFMLFVVGIICTAVGQVGVNYLVKKSGRGSYIIMSIGAVVALSTAMMGLQSAMAFVNGTMGS 507
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12741.1678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD73_9PHAE5.560e-5880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CFF2_9STRA7.220e-4664.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGS5_9STRA5.000e-4364.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YCQ0_9STRA1.110e-4272.38Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1DAC9_CYCTE4.670e-3758.20Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A836CA50_9STRA2.250e-3659.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FV47_ECTSI5.140e-3662.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9D1X1_9STRA5.790e-3660.80Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4DAW5_HETAK1.000e-3563.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1T5B1_HETAK1.280e-3563.48Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12741contigS-dermatodea_contig12741:362..3464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue4.1e-28
Seed eggNOG ortholog35128.Thaps20587
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs28PZK@1,2QWNB@2759,2XE4Z@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001320.1
Exons4
Model size381
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12741.1678.1prot_S-dermatodea_contig12741.1678.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12741 362..3464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.9682379-CDS-S-dermatodea_contig12741:361..5081622924259.9682379-CDS-S-dermatodea_contig12741:361..508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12741 362..508 -
1694079132.1094573-CDS-S-dermatodea_contig12741:361..5081694079132.1094573-CDS-S-dermatodea_contig12741:361..508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12741 362..508 -
1622924259.9780455-CDS-S-dermatodea_contig12741:1334..14181622924259.9780455-CDS-S-dermatodea_contig12741:1334..1418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12741 1335..1418 -
1694079132.123448-CDS-S-dermatodea_contig12741:1334..14181694079132.123448-CDS-S-dermatodea_contig12741:1334..1418Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12741 1335..1418 -
1622924259.9884822-CDS-S-dermatodea_contig12741:1727..18251622924259.9884822-CDS-S-dermatodea_contig12741:1727..1825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12741 1728..1825 -
1694079132.1324708-CDS-S-dermatodea_contig12741:1727..18251694079132.1324708-CDS-S-dermatodea_contig12741:1727..1825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12741 1728..1825 -
1622924259.9982526-CDS-S-dermatodea_contig12741:3412..34641622924259.9982526-CDS-S-dermatodea_contig12741:3412..3464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12741 3413..3464 -
1694079132.1419423-CDS-S-dermatodea_contig12741:3412..34641694079132.1419423-CDS-S-dermatodea_contig12741:3412..3464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12741 3413..3464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12741.1678.1

>prot_S-dermatodea_contig12741.1678.1 ID=prot_S-dermatodea_contig12741.1678.1|Name=mRNA_S-dermatodea_contig12741.1678.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
MFGVGGGIVKGPLMLEMGVHPTVAASTSAVMILYTSFTATTSFAVFGLIK
ADYAVPLFFLGLVATAVGQAGTDYLVKKFQRPSFIILSIGSVVALSALLM
GSNGLHDILYPSVGSEDAGGICSAGG*
back to top

mRNA from alignment at S-dermatodea_contig12741:362..3464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12741.1678.1 ID=mRNA_S-dermatodea_contig12741.1678.1|Name=mRNA_S-dermatodea_contig12741.1678.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3103bp|location=Sequence derived from alignment at S-dermatodea_contig12741:362..3464- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGGAGTGGGCGGCGGCATCGTGAAGGGACCGCTGATGCTCGAGAT
GGGTGAGAGGCGCTGATCGTGATGTAAAACCGCCAAGAGACACGTACGTG
TAATAGCGCTTTGCGCATTTTTCAGGGGATACTGTATTAATAGATTAGGC
TCTTGAGGCTTTTCCTGTAACTAGTAGGTAGCCACGGCTACGCTCATGAG
GTGTGCGTGGTCGCTCAACCCAAAAATCAAGTTGTTTGGTTCCTATACAA
AAATCAAGTTGTTTGTCGTCACTTTTTCGTACAGGACTCGGGCCCCAAGA
ATCATCTCTAAATCGCCATTAAAAATCGGGCAAAGCACTTTTAATTAATT
AATATGGGACTGTTGTAATGAAGTGTGTGGGGTTTGTTTTGAAGCTTTCG
GAGCATGTTGTTTTTTTCCCCTGCTGTTTTTGTATGGGCCATACAGCCGC
CACTTCCTACCAACGCACACCTCGCGTGAAGTAGCCGTGGCTACCTACTA
GTGAATAGGCGACTTCGCACGCTTTGTGCCGCAACGTGCCGCTTGCGGAG
TGTTCGTTTGCCTGCATTTCTTGCCAAGTGTTGTCGCGTGTTGACGGTGT
CGTTGAGTGACCCGTTCCGAACTGATTTCATTTTTCTGGGTTAGGCCATC
TGCCAGCAAATGCAAAGTATTTCACATCCAACAGCAGTGGTCGAATGGTT
ACTTACTCCTGGCGTCGCCGTATACTAGCGACGGTTGAAAAGTGAATTAA
TACCCTATCACGCTTCAGTGATACCCTATCACGCTTCAGTGATACCCGGC
CACGCGTAAGTGATACCTTCCAACGCTTACTAAATACCCTGCCACGCTCA
AGTGATACCCGGCCACGCTTAAGTGATACCCTATCACGCTTCATAGTGAT
ACCCGGCCACGCCTAAGTGATACCCTGCCACACTTATCTGGCTTGCACGG
TCTACTTGTGCGGGTAGTCGTAGCCGCAAAGTACCGGTATTGGCAGTATA
ACATTACCCTGGCACGCTTAGCTTGCTTGCACGGTGCACTTGTGCGGGTA
GTCGCAATCGCAAGATACCGGAAAAATACTGGTGGTGATAGTAGTATAAC
GTTCGGCGAGAGCAACCGCAATATACAGGAAATATACCGGCGGTGACAGT
AGAGCATGCGGCGATAAACAGACTCACCTCACCACACGCGGACGGAAATA
GCACAAACACCGCACCGTCTGAAATCGCCGCGCACGGATATGTCAGCGCG
TGTGTAGTTCGCCAATCCCGCCGCGATTTACCGTTGAAACCCGCCCCAAA
TTTTCAATTTTCTCCGCCCAGCCCACGGCGCCGGTGCTTGGAGTACAGTA
TACAGTAGTCACGCCTCCTGAATGTCCAACATTTGGTTGCCCGGTATGTT
CAATCAACCCATGACATATCGGCTGGCGTCGCAAACGGAGGGATGATGGC
TACTATAAAAATAGCAGCTGGGTGTCATCCTTGTGAAGCGCGGCCTGGCC
GGCGAAAACCTCGCCACGTCCTGGCACTGTTGCGACGCGTGGTCTATGTC
CGTATGGATACGATACGTGTTAAACATAAGCATTTCTCCCCCCTCCCCCC
CATGGCGCCGCGGTATTCTTGCCCCCTCCCCGCGAGCAGGCGTGCACCCC
ACCGTGGCCGCGTCCACATCGGCAGTGATGATTCTTTACACCTCCTTCAC
GGCAACTACTAGCTTCGCCGTCTTCGGCCTTATCAAGGTAAGGTATCCAT
TGATTAATAGACAGATAGATTGATTGATTGACTGATAATCACACTTATTA
TATTTGAGGCTGGCGCTTGGTTACGTTTTTGTATCGTCGTTTGTGTGGAT
GACCATTTTTGGGTGGGGATTTTTCGTGTGTACTTGCTGCACGTCTTCTG
TGGCCACGAGCGGAATCGGAGCGGAGAGGCCGATCTGCTGCACGTGTGCT
ATTGATAAATATAACAATAATAATATAAAAAATAATACTATGATTCAATA
GTGACAATTCATCATCATATATTGACGAGGCACTTGGTTTGCGCAGGCGG
ATTACGCCGTCCCGTTGTTCTTTCTGGGGCTTGTGGCCACGGCCGTGGGG
CAAGCGGGCACGGACTACCTCGTCAAGAAGGTGAACTGCAACATAGCATA
GCATATGGCTTGTCTCCCCTGCCCCCCAAGGCGTTCGCTTGTTCGGAATG
CGTACGTAAGTCGCCGCTGTACCACTATGCCGTGTGCGTTGTTTTTCTGT
CGTGTTACCAGCGGTACTTGCCGTTAGCCCTGTTAGCCCTGTCTGCGGTG
GGTGCAATTATTACGCCCCCATCGTATTTTGTGCCACCAAGATCATGGAT
GAAGACGCCGCCGCGTGGAGGCTGCGGTGCCAGCGTGCCAACCTCATAAT
CACAATGACCAAAACCTCGAGCCCCACATGGCTGTCAAATTCATTTTCTT
TGCGCTTAGGGTGTACACAGTTCGCTAGAATGCGGTGTTTGCGTAGAGGT
TTCCAGGCTTGGGACATCGAGGGTGCCATGAGCCCTTGCTGTACAGTAGC
AAAGGGGTGTGTGTTTACAATAGAAGCCCCACGTTCCGAGGTACCTGGTA
CGTCCTTTTGTTATATCGAGCGTTGTGTCGACTATTTATTGTGCACTTTC
TGTTGTGCACATATTTTTCCGTTTTGTTTTTCCGATTTTTCGATTTTCTC
ATACCCTGTATACAAGTATATGACCATGAGCGGGAGATTGGCACAGCCAT
TGGCGGGCCAATCGGTTGTAAATGTGATTGATCAATCAATCACTCAAGCA
ACCCATCAACCAATCAAATGATCTTCTTCAATCAACCAATCAAATGTTTA
CCAAGTTCCAACTTCTAGAAAGGCTCGCGAGCGCCCTAACCTAAAACAAA
AATAGCCTAAATTCACGAAAACCGTTACAACCCACCCACACCGTGTGACA
CGACAGTTTCAGCGTCCAAGCTTCATCATCCTCTCGATCGGATCCGTGGT
CGCGCTGAGCGCGTTGCTGATGGGCTCCAACGGCCTGCATGACATCCTCT
ACCCGTCCGTCGGGAGCGAGGACGCGGGCGGGATATGCTCTGCCGGCGGG
TAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12741:362..3464-

>mRNA_S-dermatodea_contig12741.1678.1 ID=mRNA_S-dermatodea_contig12741.1678.1|Name=mRNA_S-dermatodea_contig12741.1678.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig12741:362..3464- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGGAGTGGGCGGCGGCATCGTGAAGGGACCGCTGATGCTCGAGAT
GGATGTTCGGAGTGGGCGGCGGCATCGTGAAGGGACCGCTGATGCTCGAG
ATGGGCGTGCACCCCACCGTGGCCGCGTCCACATCGGCAGTGATGATTCT
TTACACCTCCTTCACGGCAACTACTAGCTTCGCCGTCTTCGGCCTTATCA
AGGCGTGCACCCCACCGTGGCCGCGTCCACATCGGCAGTGATGATTCTTT
ACACCTCCTTCACGGCAACTACTAGCTTCGCCGTCTTCGGCCTTATCAAG
GCGGATTACGCCGTCCCGTTGTTCTTTCTGGGGCTTGTGGCCACGGCCGT
GGGGCAAGCGGGCACGGACTACCTCGTCAAGAAGGCGGATTACGCCGTCC
CGTTGTTCTTTCTGGGGCTTGTGGCCACGGCCGTGGGGCAAGCGGGCACG
GACTACCTCGTCAAGAAGTTTCAGCGTCCAAGCTTCATCATCCTCTCGAT
CGGATCCGTGGTCGCGCTGAGCGCGTTGCTGATGGGCTCCAACGGCCTGC
ATGACATCCTCTACCCGTCCGTCGGGAGCGAGGACGCGGGCGGGATATGC
TCTGCCGGCGGGTAATTTCAGCGTCCAAGCTTCATCATCCTCTCGATCGG
ATCCGTGGTCGCGCTGAGCGCGTTGCTGATGGGCTCCAACGGCCTGCATG
ACATCCTCTACCCGTCCGTCGGGAGCGAGGACGCGGGCGGGATATGCTCT
GCCGGCGGGTAA
back to top