mRNA_S-dermatodea_contig8634.16780.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8634.16780.1
Unique NamemRNA_S-dermatodea_contig8634.16780.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8634.16780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8634contigS-dermatodea_contig8634:97..4104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1167
Cds size1167
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8634.16780.1prot_S-dermatodea_contig8634.16780.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8634 97..4104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925356.2980132-CDS-S-dermatodea_contig8634:96..2371622925356.2980132-CDS-S-dermatodea_contig8634:96..237Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8634 97..237 -
1694079878.1481757-CDS-S-dermatodea_contig8634:96..2371694079878.1481757-CDS-S-dermatodea_contig8634:96..237Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8634 97..237 -
1622925356.3109517-CDS-S-dermatodea_contig8634:2523..33241622925356.3109517-CDS-S-dermatodea_contig8634:2523..3324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8634 2524..3324 -
1694079878.157486-CDS-S-dermatodea_contig8634:2523..33241694079878.157486-CDS-S-dermatodea_contig8634:2523..3324Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8634 2524..3324 -
1622925356.3235698-CDS-S-dermatodea_contig8634:3879..41041622925356.3235698-CDS-S-dermatodea_contig8634:3879..4104Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8634 3880..4104 -
1694079878.1719055-CDS-S-dermatodea_contig8634:3879..41041694079878.1719055-CDS-S-dermatodea_contig8634:3879..4104Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8634 3880..4104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8634.16780.1

>prot_S-dermatodea_contig8634.16780.1 ID=prot_S-dermatodea_contig8634.16780.1|Name=mRNA_S-dermatodea_contig8634.16780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=389bp
PSRSGGGGGAAAPAPSPIPSAAGGAPDTGTGDGVSLGGAAAAAVAPAAAR
PAPSQHPPAPAPAPAPARGGPVRMSGGGASRVVARNVEMRGSLASAAGRA
VAFRKPSPLCWKGPHMVQFAPRNGPPSPPSNRGNANASTVAVDGGGSSGG
SSGGGRSLKLLAAEALTLGINSPASATAAASASPSAAASAAAGDYDHGTP
AQQIPSSPSAALEEISTANTLTTAAAAAAAGSAASAAGLPASQGAVEPWA
DDADGGNAQAGAAAAAAAAAAAAVAASGLGVTVNGGLGGGGGEGRVEVDL
WAVSPGEGLGNGVRGGGVAYSVVEAAVEAGDANVVLLLEEKEARPPYVGV
EFAHFRLSVSFDSSNDARSELGSLLYLSPVTFRVLDSK*
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mRNA from alignment at S-dermatodea_contig8634:97..4104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8634.16780.1 ID=mRNA_S-dermatodea_contig8634.16780.1|Name=mRNA_S-dermatodea_contig8634.16780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4008bp|location=Sequence derived from alignment at S-dermatodea_contig8634:97..4104- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATCTCGCTCGGGAGGGGGGGGCGGGGCGGCGGCCCCAGCCCCTTCGCC
GATACCATCCGCGGCTGGAGGCGCGCCCGACACAGGCACGGGCGACGGGG
TATCCCTCGGGGGGGCTGCTGCTGCTGCAGTTGCGCCGGCGGCGGCGAGG
CCAGCGCCGTCGCAACACCCGCCCGCACCTGCGCCTGCACCGGCGCCGGC
GCGCGGTGGTCCTGTGCGGATGAGCGTCCAGGTTAACACGGACGCCGCGC
GCGGATTCCTGACTTCCATGCGAGGGCAGCAGCAGAGGAGGAGGCTCATG
GATCACCAAGGAAGGGCTCCGCCGGCGCCGCCGGCGACTGTGACTCCGAT
TGTGACGCCGACTGCGACGCCGACGTCAACGCGCTCGTTGGAAACCCGCA
GGACCCCAGCGCGATCGACCACCGCTTCGATTGCGGATAGATCAGTGGTA
AGAAGAGCACCCGCGGCGGCGGGGGGGGGCATCGAGGCTCCGTTGGCTCC
GGTCGCGGCTCTGGTCACTCCTGGCGTACCGGCAGCCGCGCGTGCCGTCG
GTTCGGGTGCGTTTGGATCGACTGGTGGCGGAGCGAGGAGTGGGGGATCT
TCGCCGGGAGCTTCTTCTCACCACCTGACAACTCCTGGTGTGCCTGCGAG
ATTGGTCGGTGCAAACGCCTCCGCGGTGGGGTTTCCGCCCGGATCGGTTC
CCCCGCAGGGTCGGCAGTTTCCTGCTGCGCATGCCGGTGTCCGGGCCCAG
AGTGCCACCGCCTCGTCAGTGGGTAGTGAGGGCGGGGGTGCGTCGAGGGT
TGTCGCAAGGAATGTGGAGATGCGGGGATCTTTAGCGTCGGCGGCAGGCC
GCGCGGTGGCCTTCAGAAAGCCGTCGCCCCTGTGTTGGAAGGGACCGCAC
ATGGTGCAGTTCGCGCCGCGAAATGGGCCTCCTTCTCCTCCGTCGAACAG
AGGTAACGCTAACGCTTCCACGGTAGCCGTAGATGGCGGTGGCAGCAGCG
GCGGTAGCAGCGGTGGTGGCCGGTCCCTCAAGCTCTTGGCGGCCGAAGCG
CTCACCCTCGGCATTAATTCTCCAGCCTCAGCCACAGCCGCAGCCTCAGC
CTCGCCCTCAGCCGCAGCCTCAGCCGCAGCCGGCGACTACGACCATGGAA
CCCCGGCGCAGCAGATCCCTTCTTCTCCCTCCGCAGCGCTCGAAGAAATT
TCAACCGCGAACACGCTCACCACCGCCGCCGCCGCCGCCGCCGCAGGTTC
GGCTGCAAGCGCCGCAGGCTTGCCCGCGAGCCAGGGCGCGGTGGAGCCCT
GGGCGGACGATGCCGACGGAGGCAACGCCCAAGCCGGTGCCGCTGCGGCG
GCGGCGGCGGCGGCGGCAGCAGCAGTAGCGGCGTCGGGGCTGGGCGTTAC
CGTGAATGGAGGCCTTGGGGGCGGGGGGGGCGAGGGGCGGGTTGAGGTTG
ATCTGTGGGCGGTGTCTCCTGGGGAAGGGTTGGGGAACGGCGTGCGGGGA
GGGGGGGTTGCGTATTCGGTGGTGGAGGCGGCGGTTGAGGCGGGGGACGC
TAACGTGGTTCTTCTTCTGGAGGAAAAGGAGGTGAGTGACCGGTGGTGGG
GTATTGGTGTAACCGAGTTTTGTGTTCTGGTTGAGATGGCAAGGGTGTTT
TGCGCCGTCTGCACTTTAGGGAAGTAGTCCACCGCCATTGTAAATCGTTA
TCGTTATCGCTGCCGCATGCAACATCGTTCTGAATAGATGTGCCCCGGAA
AGACTGGTGTGTTGTTTTTAACGTGGAAATGAGCCATGGGATACCCTGAA
AGAAGAAAAAAAACTAATTTCATATGTGCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCTCTCTGGCAAAGTAGGAAGAAACGACAGTCACAGGAAGT
GTAAATAGCTGAAGTAGGAAATATTAAAGACTGATGGTTTCGATAGATAT
GATTTTCAATGAGACAGCCAGACGAAGGCAGTACTCTGTAGCAACACGAT
ACGGGAGCTAAGAAGTGGCCAACAGGCAGCATTGAAGTATTTACGGAGGT
ACACTATAATCAAGTAATCAGGACAATAAATACGCAACTGTTCCGACCAT
AAACACCTACAGTAGACAACACCGAAAAATCGCGAATATAAAAACAACGC
GAGGCCTGGCCTATTATACGAGAAACACCGACAATACCGTGAAAACCCAA
TCGTTCCGGCCTTTCTTGTTTTGCCAAGTTAACATTTGCGCCGAAATTGG
ACTTGATAACTATTATCCTCCGTAATACTGTACTGTATATACTGTACTGT
ATATACTGTACTGCATATATTGTACTGTATACTGTACTTATACTGTACTG
TAGATAGAACAACAAACACGTTTTTGGGCCAACTAAGTTTAGTAGGAAGG
AAGGAAGGGACGATTGGCTATCAGCGGTCGATCGATCCATCGGTCCATCC
TGTGGGACCAATGCTCCGTCCTCCCGAGGACGAAATCGTTCGTCACTGGC
CTAACAGCTAAGACGTGAAAAACTTAGGTACCCCCCCCCCCCCCTCAAGT
CTCTTTGCGGTACGTGGAGTATAGTGATGCCTACTAAATGTGCAACATAT
TGGTGCCCGGTATTGTCCAATCAAACCTTGCCGTATCGGTTGGCGTCGCA
AACGCAAGGATGGGGACTAGCGTCTGATATAATCCTTGTTAAAAAAAAAC
CAGCCTGGCCGACGAAAATAAACCCGGTATATCGCTCCGCCCCGGCCTTG
TTTGGATTCGTGGTCTACGTCCGTTCGGATACGACATGCGCTAATAATAT
GTCCCCCCCCCCCCCCGCGCGCGCCCGCCCCGCGGGTATAGTCATACTAA
CGCCTACTGAATGTGCAACTTTTGATTGCCCGGTATGTCCGATCAACCCA
TGGCATACCGTTTGGCGTCGCAAACGCAAGGAATATTGCTATTAAATAAC
AGCTGGCATAAGTCCTTGGTCAACACGGCATGGCCGGCGAAACCCCGGCA
TATCGCTCCGTCCCGGCATTGTGGAGATGCATCGTCTAAGTCCGTTCGGA
TAGGACATGCTTCAGTCTGTAGAACAAAGTACGCACACACACTCACCCTG
AAAAAAAATGACGATTTGTAAAGCACTTATGCGTAGCCCCGGCTACTTTC
GTGAGGTGTGTCTTGGCGCAAAGTACTGCTCTGTAAGGTGCAACTCTAAA
ATCCCTATGACGTTTGGCATCACGACTCGTATGCAAGTACTTGTAGGAAA
GTCGGCATCAAAGGTCCACTCTAAATCGCTATTTAAAAAAAAACGTGCAC
ACACACACACACACACACACACACACCAGGTAAGTCACACACACTCCACA
TAAGTCACACACACTCCAGATAAGTATATATGACTGAACTGGGAAAGTTG
AAAGCTGTGATAGACAAGAGACTTTTGGAGCATGGAACAGCCAGACGAAG
GAGGCAGTAGCTTTCCCGTGGGGTTAGAAGTAGCCTGAGAAGGCGAGAAG
TGATGTACAGTAGATAGATAGATCTTGTGAGAACAATGCTCCGTCCTCTC
GAGGACGCATGGTCAATGATCTAACAGCTAAGGCATGCAAATCATGAGTA
CCCCCCCCCCCCCCCCCGACAAACGCAAGGATGATGGCCAACAGCTGGTA
TAATCCTTGCGAAACGCACTCTGGCCGGCGAAGACGCAGCATATCGCTCC
TCTCCGTCCTGGCATTGTTGTGAGGCGTGGTCCAGGTCCGTTTAGATACG
ACACGCGCTTAACACAATTCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCTCCCCCCTCCCATC
CTACGTTGCGATGAAAGGCCCGCCCGCCGTACGTGGGAGTGGAGTTTGCC
CACTTCCGCCTCTCTGTGTCCTTTGACAGCTCTAACGATGCCCGGAGCGA
GCTGGGCAGCCTGCTCTACCTCAGCCCCGTTACGTTCCGAGTGTTGGACT
CGAAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8634:97..4104-

>mRNA_S-dermatodea_contig8634.16780.1 ID=mRNA_S-dermatodea_contig8634.16780.1|Name=mRNA_S-dermatodea_contig8634.16780.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2334bp|location=Sequence derived from alignment at S-dermatodea_contig8634:97..4104- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATCTCGCTCGGGAGGGGGGGGCGGGGCGGCGGCCCCAGCCCCTTCGCC
GATACCATCCGCGGCTGGAGGCGCGCCCGACACAGGCACGGGCGACGGGG
TATCCCTCGGGGGGGCTGCTGCTGCTGCAGTTGCGCCGGCGGCGGCGAGG
CCAGCGCCGTCGCAACACCCGCCCGCACCTGCGCCTGCACCGGCGCCGGC
GCGCGGTGGTCCTGTGCGGATGAGCCCATCTCGCTCGGGAGGGGGGGGCG
GGGCGGCGGCCCCAGCCCCTTCGCCGATACCATCCGCGGCTGGAGGCGCG
CCCGACACAGGCACGGGCGACGGGGTATCCCTCGGGGGGGCTGCTGCTGC
TGCAGTTGCGCCGGCGGCGGCGAGGCCAGCGCCGTCGCAACACCCGCCCG
CACCTGCGCCTGCACCGGCGCCGGCGCGCGGTGGTCCTGTGCGGATGAGC
GGCGGGGGTGCGTCGAGGGTTGTCGCAAGGAATGTGGAGATGCGGGGATC
TTTAGCGTCGGCGGCAGGCCGCGCGGTGGCCTTCAGAAAGCCGTCGCCCC
TGTGTTGGAAGGGACCGCACATGGTGCAGTTCGCGCCGCGAAATGGGCCT
CCTTCTCCTCCGTCGAACAGAGGTAACGCTAACGCTTCCACGGTAGCCGT
AGATGGCGGTGGCAGCAGCGGCGGTAGCAGCGGTGGTGGCCGGTCCCTCA
AGCTCTTGGCGGCCGAAGCGCTCACCCTCGGCATTAATTCTCCAGCCTCA
GCCACAGCCGCAGCCTCAGCCTCGCCCTCAGCCGCAGCCTCAGCCGCAGC
CGGCGACTACGACCATGGAACCCCGGCGCAGCAGATCCCTTCTTCTCCCT
CCGCAGCGCTCGAAGAAATTTCAACCGCGAACACGCTCACCACCGCCGCC
GCCGCCGCCGCCGCAGGTTCGGCTGCAAGCGCCGCAGGCTTGCCCGCGAG
CCAGGGCGCGGTGGAGCCCTGGGCGGACGATGCCGACGGAGGCAACGCCC
AAGCCGGTGCCGCTGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGTAGCG
GCGTCGGGGCTGGGCGTTACCGTGAATGGAGGCCTTGGGGGCGGGGGGGG
CGAGGGGCGGGTTGAGGTTGATCTGTGGGCGGTGTCTCCTGGGGAAGGGT
TGGGGAACGGCGTGCGGGGAGGGGGGGTTGCGTATTCGGTGGTGGAGGCG
GCGGTTGAGGCGGGGGACGCTAACGTGGTTCTTCTTCTGGAGGAAAAGGA
GGGCGGGGGTGCGTCGAGGGTTGTCGCAAGGAATGTGGAGATGCGGGGAT
CTTTAGCGTCGGCGGCAGGCCGCGCGGTGGCCTTCAGAAAGCCGTCGCCC
CTGTGTTGGAAGGGACCGCACATGGTGCAGTTCGCGCCGCGAAATGGGCC
TCCTTCTCCTCCGTCGAACAGAGGTAACGCTAACGCTTCCACGGTAGCCG
TAGATGGCGGTGGCAGCAGCGGCGGTAGCAGCGGTGGTGGCCGGTCCCTC
AAGCTCTTGGCGGCCGAAGCGCTCACCCTCGGCATTAATTCTCCAGCCTC
AGCCACAGCCGCAGCCTCAGCCTCGCCCTCAGCCGCAGCCTCAGCCGCAG
CCGGCGACTACGACCATGGAACCCCGGCGCAGCAGATCCCTTCTTCTCCC
TCCGCAGCGCTCGAAGAAATTTCAACCGCGAACACGCTCACCACCGCCGC
CGCCGCCGCCGCCGCAGGTTCGGCTGCAAGCGCCGCAGGCTTGCCCGCGA
GCCAGGGCGCGGTGGAGCCCTGGGCGGACGATGCCGACGGAGGCAACGCC
CAAGCCGGTGCCGCTGCGGCGGCGGCGGCGGCGGCGGCAGCAGCAGTAGC
GGCGTCGGGGCTGGGCGTTACCGTGAATGGAGGCCTTGGGGGCGGGGGGG
GCGAGGGGCGGGTTGAGGTTGATCTGTGGGCGGTGTCTCCTGGGGAAGGG
TTGGGGAACGGCGTGCGGGGAGGGGGGGTTGCGTATTCGGTGGTGGAGGC
GGCGGTTGAGGCGGGGGACGCTAACGTGGTTCTTCTTCTGGAGGAAAAGG
AGGCCCGCCCGCCGTACGTGGGAGTGGAGTTTGCCCACTTCCGCCTCTCT
GTGTCCTTTGACAGCTCTAACGATGCCCGGAGCGAGCTGGGCAGCCTGCT
CTACCTCAGCCCCGTTACGTTCCGAGTGTTGGACTCGAAGTGAGCCCGCC
CGCCGTACGTGGGAGTGGAGTTTGCCCACTTCCGCCTCTCTGTGTCCTTT
GACAGCTCTAACGATGCCCGGAGCGAGCTGGGCAGCCTGCTCTACCTCAG
CCCCGTTACGTTCCGAGTGTTGGACTCGAAGTGA
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