mRNA_S-dermatodea_contig863.16776.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig863.16776.1 vs. uniprot
Match: D8LSU4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU4_ECTSI) HSP 1 Score: 815 bits (2104), Expect = 7.080e-266 Identity = 744/1623 (45.84%), Postives = 862/1623 (53.11%), Query Frame = 1
Query: 40 GAAGGVTQGIHRAVLDWSTGVIAKLAGGLLR----TSAPNTATTSPATTDAGGDTQSGGTGERHARNARRWLSDPRTWQAFVRSLQGAAA-AAEPNTHLPQAASIAILRGAVFAVRAAAAAASPDVGSGADEDGSGSEIAVVTLAGDWAFLAIRTLCGG-------NAPQGRLPSAGGSPGKLEA------------GGNIAVGETGDGGRHVGRR---GRGALVRVALDAYVTFLEEVIRGH-------VVAGVVRSGLGGAVAVGA--------------PRRGEEALTELLRYQVVLQGQQPNRRKVFASFCSKLMGSLFETL-----TDTTSAPLKAAATELAWDALFHEEHLEGYREAFTAAEA----------------------------------------------------------------------------------ASAATMARLAGSGEDRSRRAAMTGAPLLLEGFILRLGRARQEGSADIHRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPASQMFKLWAVLTSTVAISLPPSSPTASAEVVASASVSATGSGAARGARPLLLPYLRASNAMLRLLASHDVYRINEDWGGLEFNQLQSFSTSLLRLAALESGRA---QGGDRS--GGAGGVGA----------------PPAPDGQEEV---PATAVGGGVGAA-QEFAKAFRSLLGLNHNILHDDLRSVLRMTFEWAAAAVAGAPAPTGSSLVVVSTEGGTHASGGSGNGGNGLLTLRALAIDLVVGLVDTYGRLRQVDHLVRALFGAVSDRPSASAAVLRGEQCTAALGRAFRRLPEGQIESMWYVFADHLRGAWSGPAGRPGEDVGGRXXXXXXXXGGCELLAREVDAEVFVLFVRNLHVTSSVAFAVGKLCASLAEESLRSFEEPLRRAXXXXXXXXXXXXXXXXXXXXXXXH--GEREGEAAGGSCDDGSI-------ISAVEVMLRFRPALDVHGWLLDLDTRCRFWSAVLD--LSSSGEDSLPDSLPITTPLDDTDE-------------ASTNQ----SALLLSDG-----ALPRIIAAAAAALDKSPPTGPGPDDGTWTAGPAASAATARLTKTLQQVAVHRIQQIYALLNGAAALGTAAGTXXXXXXXXSEAVATGADPDALPEASGARGAKAEDERLEE----------EARGLVEFACGVCGSSRGDWGGGVDGGAMRWGDELGNS-SAGASWSMMMPYLPVWIGFAARKQVALFLEALLSRCARDILAGRGQAESPPLRLLTDASFYEMEAIATSAPVVILSKVYLAIKRAVGGVGGD-DAQVGHPMSASPMTSSMETVVAAVQALAAQDEEGGHGSDDETSGAEWDSVGALPGSDGGGGVESGRGLEGRWMGAGGGRGGEDXGPAGGDEPLLEACCLLKLAERFPPAFLDEDAVAGLLLAADALDAVCVRSLSRRAKRGRG----------------------ESPKRIGG--------GCSAGRTALVEAVTALRSLFLRLGLALPPSSPLLQRFSPGDTLLRVTGAITVGGTG------LLLRTSAALLPFLAECCVGVGQTKAALRAVARLGLTRVGETPVSEG 4185
GA GVTQG+HRAVLDWSTGVI KLA L + ++PN +TT+ T ERHARNAR WLSDPR W+ FVRSL+G A AAEP+THLPQAAS+ +LR A+FAVRA A A+ G+ A S S AGDWAF+A+ TLCGG + GS ++A G +AV G V + G GA+++++LDA+VTFL+EV+RGH ++AG +G GG +VG P E ALTELLR+QVVLQ QQ + RKVF +FCSKLMGSLF+ L T + S+PLK AA +A DALFHEEHLEGYREAFTAAEA A+ A +R G GE RSR A+ GAP+LLEGFILRLG+ Q G+ DIH A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPASQMF+LW+VL ST+ LP P+ G R LLLP+LR+SN+MLR LA HDVYRINEDWGGLEF+QL+SFS+SL+RLA GR GGD S GGA G A P AP V P G GAA +EF +AF SLLGLNH+ILHDDLR VLRMTFEWAA A T LRALA+DLV LV TYGRLRQ+DHLVRALFGAVSD P A+AA+LR ++C AALGRAFRRLPEGQI SMW VFA HLR W+ AG +LLARE+DAE+FV+FVRNLHVTSSVA AVG LC LAEESLRSF PLR+A XXXXXXXXXXXXXXXXXXXXXX GER G+ DGS + ++ML FRPALDVHGWLLDLDTRCRFWSAVLD L ++ P DD D A+T S L+ DG +LPRIIAAA AAL+ S +G + A +RL KTLQQVAVHR+QQIYA LNG AAL ++GTXXXXXXXX EARGLV +ACG C S GD G + WGDE G GASWSMMMPYLPVWIGFA +QVALFLEALLSRCA DILAGRG+ ESPPLRLL+DASFYEMEA+A SAP VIL++V+ A++ AVGG G D + P +++T+VAAVQALA + ERFP FLDE+A+A +L+A+DALDAV R L R+ G G + P GG G +LVEAV ALR L LRLG +LPP SPLL+ GD LLR G G G LLR SA LLPFLAE CV G TK AL+A+ LGL + P SEG
Sbjct: 55 GAVTGVTQGVHRAVLDWSTGVIVKLAAALPKHATIAASPNVSTTT--------------TSERHARNARGWLSDPRIWRCFVRSLRGGATQAAEPSTHLPQAASLGVLRAAIFAVRAGAPGAAAAAGAAARAWESCSAPPQAAGAGDWAFVAVLTLCGGVIXXXXXXXXXXXXGHSSGSMTSIDAAVLDELRPRRADGRLLAV--AGPAPATVASKRWGGGGAVMKMSLDAFVTFLDEVLRGHEAVCQALLLAGD-GAGSGGRSSVGGKEAAAVATAGGGALPSLAEGALTELLRFQVVLQAQQTSPRKVFTTFCSKLMGSLFQALPPEGSTASASSPLKTAAKAVACDALFHEEHLEGYREAFTAAEAXXXXXXXARTGSSPQGEGVAPTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKFKKPRIRVCYQQQLLDEMAALAAGSRGDGEGEGRSRLGAVAGAPILLEGFILRLGKV-QRGAVDIHEASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------SPASQMFRLWSVLNSTLLGYLPSVPPSXXXXXX-------XXDGTVVLPRLLLLPFLRSSNSMLRFLAEHDVYRINEDWGGLEFDQLRSFSSSLIRLADSCYGRGGSRAGGDNSTDGGAPGSTAAAMAVSGDGARRREDTPDAPAAAARVLVKPTKEQAAGAGAAAEEFLRAFGSLLGLNHSILHDDLRPVLRMTFEWAATA------ETEEXXXXXXXXXXXXXXXXXXXXXXPPAVLRALAVDLVASLVGTYGRLRQMDHLVRALFGAVSDCPQAAAAMLRMDECAAALGRAFRRLPEGQIASMWDVFAAHLREGWNQGAGXXXXXXRN------------DLLAREMDAELFVVFVRNLHVTSSVASAVGALCLRLAEESLRSFGVPLRQAAXXXXXXXXXXXXXXXXXXXXXXXXXGERAESEQHGAIGDGSGSGGSSGGVPMSQMMLSFRPALDVHGWLLDLDTRCRFWSAVLDSSLPATAAAXXXXXXXAAIPQDDGDTLVEEGGDRDETTGATTTPAPCASLLVPPDGDGADVSLPRIIAAATAALETSNSSGSSSLEAGMGAHDEEVGVRSRLEKTLQQVAVHRVQQIYARLNGVAAL-ESSGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKXXXXXEARGLVAYACGACRGSGGD-----GRGPVAWGDEDGGGRGGGASWSMMMPYLPVWIGFAEEEQVALFLEALLSRCAADILAGRGEEESPPLRLLSDASFYEMEAVAKSAPAVILTRVFHAVRCAVGGGRGTGDKKEDGAARLPPGFPAVDTIVAAVQALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXMTERFPAGFLDEEALAAMLVASDALDAVLARCLLSRSGSGGGIAGGGKGKKPEDGDAAEILLDDDVPPFRGGLGSLASPAGAGPREESLVEAVAALRGLSLRLGRSLPPESPLLEGLPQGDALLRAIGPAAGGERGGESSRAHLLRASACLLPFLAERCVLRGDTKTALKAIVGLGLIK--PRPASEG 1605
BLAST of mRNA_S-dermatodea_contig863.16776.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE) HSP 1 Score: 794 bits (2051), Expect = 1.620e-250 Identity = 753/1784 (42.21%), Postives = 875/1784 (49.05%), Query Frame = 1
Query: 40 GAAGGVTQGIHRAVLDWSTGVIAKLAGGLLRTSAPNTATTSPATTDAGGDTQSGGTGERHARNARRWLSDPRTWQAFVRSLQGAAA-AAEPNTHLPQAASIAILRGAVFAVRA------AAAAASPDVGSGADEDGSGSE--------IAVVTLAGDWAFLAIRTLCGG---------------------------------NAPQGRLPSAGGSPGKLEAGGNIAVGETGDGGRHVGRRGRGALVRVALDAYVTFLEEVIRGHVVAGVV------------RSGLGG----AVAVGA----PRRGEEALTELLRYQVVLQGQQPNRRKVFASFCSKLMGSLFETL------TDTTSAPLKAAATELAWDALFHEEHLEGYREAFTAAEAASAATMARLA---------------------------------------------------------------------------------GSGEDRSRRAAMTGAPLLLEGFILRLGRARQEGSADIHRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPASQMFKLWAVLTSTVAISLPPSSPTASAEVVASASVSATGSGAARGARPLLLPYLRASNAMLRLLASHDVYRINEDWGGLEFNQLQSFSTSLLRLAA---------------------LESGRAQGGDRSGGAGGVGAPPAPDGQEEV----PATAVGGGVGAAQEFAKAFRSLLGLNHNILHDDLRSVLRMTFEWAAAA------------VAGAPAPTGSSLVVV--------------------STEGGTHAS----------------------------------------------------------------------------------------------GGSGNGGNGLLTLRALAIDLVVGLVDTYGRLRQVDHLVRALFGAVSDRPSASAAVLRGEQCTAALGRAFRRLPEGQIESMWYVFADHLRGAWSGPAGRPGEDVGGRXXXXXXXXGGCELLAREVDAEVFVLFVRNLHVTSSVAFAVGKLCASLAEESLRSFEEPLRRAXXXXXXXXXXXXXXXXXXXXXXXH-GEREGEAAG-GSCDDGSIISAV---EVMLRFRPALDVHGWLLDLDTRCRFWSAVLDLSSSGEDSLPDSLPITTPL---------DDTDEASTNQ----SALLLSDG-----ALPRIIAAAAAALDK----------SPPTGPGPDDGTWTAGPAASAATARLTKTLQQVAVHRIQQIYALLNGAAALGTAAGTXXXXXXXXSE-AVATGADPDALPEASGARGAKAE-----DERLEEEARGLVEFACGVCGSSRGDWGGGVDGGAMRWGDELGNS-SAGASWSMMMPYLPVWIGFAARKQV-----------------------ALFLEALLSRCARDILAGRGQAESPPLRLLTDASFYEMEAIATSAPVVILSKVYLAIKRAVGGVGGD-DAQVGHPMSASPMTSSMETVVAAVQALAAQD----EEGGHGSDDETSGAEWDSVGALPGSDGGGGVESGRGLEGRWMGAGGGRGGEDXGPAGGDEPLLEACCLLKLAERFPPAFLDEDAVAGLLLAADALDAVCVRSLSRRAKRGRGES----------------------PKRIGG------GCSAG--RTALVEAVTALRSLFLRLGLALPPSSPLLQRFSPGDTLLRVTGAITVGGT-------GLLLRTSAALLPFLAECCVGVGQTKAALRAVARLGLTR 4158
GAA GVTQG+HRAVLDWSTGVI KLA L + A A+T+ +TT T ERHARNARRWLSDPR W+ FVRSL+G A AAEP+THLPQAAS+ +LR A+FAVRA AAA A+ G +E GDWAF+A+ TLCGG G + + G A +A G G GA+++++LDAY TFL+EV+RGH + RS +GG AVA P E ALTELLR+QVVLQ QQ + RKVF +FCSKLMGSLF L T + S+PLK AA +A+DALFHEEHLEGYREAFTAAE A AA +AR G G RSR A+ GAP+LLEGFILRLG+ Q G+ DIH A XXXXXXXXXXXXXXXXXX SPASQMF+LW+VL ST+ SL PS+P++S + G R LLLP+LR+SN+MLRLLA HDVYRINEDWGGLEF QL+SFS+SL+RLA + A R G AP AP V V G AA+EF +AF SLLGLNH+ILHDDLR VLRMTFEWAA A V G +G VV+ ST+GG AS GG G G + LRALA+DLV LV TYGRLRQ+DHLVRALFGAVSD P A+AA+LR ++C AALGRAFRRLPEGQI MW VFA HLR W+ AG G XXXXXX +LLARE+DAE+FV+FVRNLHVTSSVA AVG LC+SLAEESLRSF PLR+A XXXXXXXXXXXXXXXXXXXXXX GE E+ G+ DGS V E+ML FRPALDVHGWLLDLDTRCRFW AVLD SSS ++P D T A+T S L+ DG +LPRI S G G D +RL KTLQQVAVHR+QQIYA LNG AAL ++ T S + A G D D + +E+LE+EARGLV +ACG C RG GGG G + WGDE G+ GA WSMMMPYLPVW+GFA +QV ALFLEALLSRCA DIL GRG+ ESPPLRLL+DASFYEMEA+A SAP VIL++V+ A++RAVGG G D + P ++ T+VAAVQALA E G G G+ DS + G GG E R G D + ERFP FLDE+A+A +L+A+DALD V RSLS R G P GG SAG +LVEAV ALR L LRLG +LPP SPLL+R GD LLR G LLR SA+LLPFLAE CV G TK AL+A+ LGL +
Sbjct: 85 GAATGVTQGVHRAVLDWSTGVIVKLAAALPK-HATIAASTNVSTTT---------TSERHARNARRWLSDPRIWRCFVRSLRGGATQAAEPSTHLPQAASLGVLRAAIFAVRAGAPGSLAAAGAAARAGDSCSASPQAAEPNNDGVAXXXXXXXXGDWAFVAVLTLCGGVXXXXXXXXXXXXXQSSGSMTSIDAAVLDELRPRRADGMVLATAGPAAPAPALATVASKRWGGG---------GAVMKMSLDAYATFLDEVLRGHEAVCLALPLAGDGAGSGGRSSVGGKEAAAVATAGGGALPSLAEGALTELLRFQVVLQAQQTSPRKVFTTFCSKLMGSLFRALPPEISTTASASSPLKTAAKAVAFDALFHEEHLEGYREAFTAAEEAVAAAVARTGSSPQGXXXXXXXXXXDGKNISEPDQSXXXXXXXXXXXXXXXXXXXXXXXXXXKFKKPRSRVCYQQQLLDEMAALAAGSRADGEGGGRSRLGAVAGAPILLEGFILRLGKV-QRGAVDIHEASGAATAAVAVGGKRXXXXXXXXXXXXXXXXXX--------SPASQMFRLWSVLHSTLLGSL-PSAPSSSPPPAQPSD------GTVVLPRLLLLPFLRSSNSMLRLLAEHDVYRINEDWGGLEFGQLRSFSSSLIRLAESCXXXXXXXXXXXXXXXXXAPASTPAAMAVSRDGARRTEDAPDAPAAAARVLVKPTKEEVTGAGAAAEEFLRAFGSLLGLNHSILHDDLRQVLRMTFEWAATAETAESATAAPGTVRGGDGGSGGPTVVLRALAVDLVASLVGTGGGXXNSTDGGAPASTPAAMAVSRDGARRTEDAPDAPAAAARVLVKPTKEEVTGAGAAAEEFLRAFGSLLGLNHSILHDDLRQVLRMTFEWAATAETXXXXXXXPGTVRGGDGGSGGPTVVLRALAVDLVASLVGTYGRLRQMDHLVRALFGAVSDCPQAAAAMLRRDECAAALGRAFRRLPEGQIAPMWDVFAAHLREGWNQGAG-----CGXXXXXXXXRN---DLLAREMDAELFVVFVRNLHVTSSVASAVGALCSSLAEESLRSFGVPLRQAAXXXXXXXXXXXXXXXXXXXXXXXXGEERAESEQHGALGDGSGSGGVPMSEMMLSFRPALDVHGWLLDLDTRCRFWFAVLDSSSSATAGAGAAIPQDDGNTLVEEGGDGDKTARATTAPAPPASVLMPPDGDEADASLPRIXXXXXXXXXXXXXXXXXXXXSLEAGTGAHD-------EEVGVRSRLEKTLQQVAVHRVQQIYAHLNGVAALESSGTTGAAERRPASPPSGAEGMDDDQEGKLEXXXXXXXXXXXXXEEKLEDEARGLVAYACGAC---RGSGGGGH--GPVTWGDEDGDGRGGGAGWSMMMPYLPVWVGFAEEEQVGGQPLVPSIDTSNRSGSRPPYLVALFLEALLSRCAADILDGRGEEESPPLRLLSDASFYEMEAVAKSAPAVILARVFHAVRRAVGGARGTGDKKESGSARLPPGFPAVGTIVAAVQALATAATTTANEKGKGRGGAAEGSXSDSPAEVTG---GGEAE---------------RKGRDK-XXXXXXXXXXXXXXXXMTERFPSGFLDEEAIAAMLVASDALDTVLARSLSSRCGSGGXXXXXXXXXXXXXXXXXXXXLDDHVPSSRGGLGSLASPASAGPREESLVEAVAALRRLSLRLGRSLPPESPLLERLPQGDALLRAIEPAAASGERGGESSRAHLLRASASLLPFLAERCVLRGDTKTALKAIVGLGLIK 1794 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig863.16776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig863.16776.1 >prot_S-dermatodea_contig863.16776.1 ID=prot_S-dermatodea_contig863.16776.1|Name=mRNA_S-dermatodea_contig863.16776.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1400bp SHSFQSARHSPQAGAAGGVTQGIHRAVLDWSTGVIAKLAGGLLRTSAPNTback to top mRNA from alignment at S-dermatodea_contig863:4256..11885+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig863.16776.1 ID=mRNA_S-dermatodea_contig863.16776.1|Name=mRNA_S-dermatodea_contig863.16776.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7630bp|location=Sequence derived from alignment at S-dermatodea_contig863:4256..11885+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig863:4256..11885+ >mRNA_S-dermatodea_contig863.16776.1 ID=mRNA_S-dermatodea_contig863.16776.1|Name=mRNA_S-dermatodea_contig863.16776.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=8400bp|location=Sequence derived from alignment at S-dermatodea_contig863:4256..11885+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |