prot_S-dermatodea_contig863.16777.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig863.16777.1
Unique Nameprot_S-dermatodea_contig863.16777.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length112
Homology
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BLAST of mRNA_S-dermatodea_contig863.16777.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.940e-13
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0 
Query:   44 IEESWHCFRSCCHLVGTLLHHYAGKVFSCTPPFASVCRSLLSLFFCLA 91
            + ES  CFR+ C +VGT+L HYA KV+SCTPPFAS+CRSLL LFF LA
Sbjct: 2246 VRESLRCFRATCRVVGTVLQHYARKVYSCTPPFASLCRSLLRLFFRLA 2293
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig863.16777.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIT9_9PHAE4.940e-1368.75Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018849Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminalPFAMPF10441Urb2coord: 40..89
e-value: 1.3E-5
score: 25.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig863contigS-dermatodea_contig863:13198..13533 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig863.16777.1mRNA_S-dermatodea_contig863.16777.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig863 13198..13533 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig863.16777.1 ID=prot_S-dermatodea_contig863.16777.1|Name=mRNA_S-dermatodea_contig863.16777.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
AALRAAEGSHGRATAGGSRGEGEKGEGKETLDSVSPDETRAEQIEESWHC
FRSCCHLVGTLLHHYAGKVFSCTPPFASVCRSLLSLFFCLAVPAPTAPAA
GPKAGDWADGSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018849Urb2/Npa2_C