mRNA_S-dermatodea_contig863.16777.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig863.16777.1
Unique NamemRNA_S-dermatodea_contig863.16777.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig863.16777.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.940e-13
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:  130 IEESWHCFRSCCHLVGTLLHHYAGKVFSCTPPFASVCRSLLSLFFCLA 273
            + ES  CFR+ C +VGT+L HYA KV+SCTPPFAS+CRSLL LFF LA
Sbjct: 2246 VRESLRCFRATCRVVGTVLQHYARKVYSCTPPFASLCRSLLRLFFRLA 2293
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig863.16777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIT9_9PHAE4.940e-1368.75Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig863contigS-dermatodea_contig863:13198..13533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.9289775-CDS-S-dermatodea_contig863:13197..135331622925355.9289775-CDS-S-dermatodea_contig863:13197..13533Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig863 13198..13533 +
1694079877.8657582-CDS-S-dermatodea_contig863:13197..135331694079877.8657582-CDS-S-dermatodea_contig863:13197..13533Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig863 13198..13533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig863.16777.1prot_S-dermatodea_contig863.16777.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig863 13198..13533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig863.16777.1

>prot_S-dermatodea_contig863.16777.1 ID=prot_S-dermatodea_contig863.16777.1|Name=mRNA_S-dermatodea_contig863.16777.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
AALRAAEGSHGRATAGGSRGEGEKGEGKETLDSVSPDETRAEQIEESWHC
FRSCCHLVGTLLHHYAGKVFSCTPPFASVCRSLLSLFFCLAVPAPTAPAA
GPKAGDWADGSG
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mRNA from alignment at S-dermatodea_contig863:13198..13533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig863.16777.1 ID=mRNA_S-dermatodea_contig863.16777.1|Name=mRNA_S-dermatodea_contig863.16777.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig863:13198..13533+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCTCTCCGCGCCGCGGAAGGCTCCCACGGCCGCGCAACAGCAGGCGG
CAGTCGTGGCGAAGGCGAAAAAGGTGAAGGCAAAGAAACCCTCGACAGTG
TGTCACCGGACGAGACCCGGGCGGAGCAGATAGAGGAGAGCTGGCATTGC
TTCCGCTCCTGCTGCCACCTTGTGGGCACGCTGCTTCACCACTACGCGGG
CAAGGTCTTCTCGTGCACGCCTCCCTTCGCGTCCGTCTGCCGCTCTCTGC
TAAGCCTTTTCTTCTGCCTCGCGGTGCCCGCGCCGACGGCGCCAGCGGCT
GGACCCAAGGCCGGAGACTGGGCAGACGGAAGCGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig863:13198..13533+

>mRNA_S-dermatodea_contig863.16777.1 ID=mRNA_S-dermatodea_contig863.16777.1|Name=mRNA_S-dermatodea_contig863.16777.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig863:13198..13533+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCTCTCCGCGCCGCGGAAGGCTCCCACGGCCGCGCAACAGCAGGCGG
CAGTCGTGGCGAAGGCGAAAAAGGTGAAGGCAAAGAAACCCTCGACAGTG
TGTCACCGGACGAGACCCGGGCGGAGCAGATAGAGGAGAGCTGGCATTGC
TTCCGCTCCTGCTGCCACCTTGTGGGCACGCTGCTTCACCACTACGCGGG
CAAGGTCTTCTCGTGCACGCCTCCCTTCGCGTCCGTCTGCCGCTCTCTGC
TAAGCCTTTTCTTCTGCCTCGCGGTGCCCGCGCCGACGGCGCCAGCGGCT
GGACCCAAGGCCGGAGACTGGGCAGACGGAAGCGGCGCCGCTCTCCGCGC
CGCGGAAGGCTCCCACGGCCGCGCAACAGCAGGCGGCAGTCGTGGCGAAG
GCGAAAAAGGTGAAGGCAAAGAAACCCTCGACAGTGTGTCACCGGACGAG
ACCCGGGCGGAGCAGATAGAGGAGAGCTGGCATTGCTTCCGCTCCTGCTG
CCACCTTGTGGGCACGCTGCTTCACCACTACGCGGGCAAGGTCTTCTCGT
GCACGCCTCCCTTCGCGTCCGTCTGCCGCTCTCTGCTAAGCCTTTTCTTC
TGCCTCGCGGTGCCCGCGCCGACGGCGCCAGCGGCTGGACCCAAGGCCGG
AGACTGGGCAGACGGAAGCGGC
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