mRNA_S-dermatodea_contig86297.16775.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86297.16775.1
Unique NamemRNA_S-dermatodea_contig86297.16775.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A6H5JJ00_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ00_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 9.680e-20
Identity = 57/134 (42.54%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   34 KWVSTSSGPSEQGAVVVHPDSNTVIDSFPSRPLNFVTIFGPARSGKSFVMNALARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKG-----KSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKV 420
            KWV+ + G  +         SN   D    + L+ VTI G AR  KSF+MNAL RR+  F VSP   PCT+G DLS  ++ L EF  G+A        S   P I FVD+EG GD      V+LA P +L SKV
Sbjct:    6 KWVTATDGRLQATEEACERLSNVSDD----QSLSIVTILGAARQEKSFLMNALTRRDNGFRVSPEGYPCTAGADLSSILMPLSEFKRGSAGNTTHLPSSSPQPTIRFVDMEGQGDRSDERDVRLATPFLLGSKV 135          
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: D7FYG2_ECTSI (GBP4, guanylate-binding proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG2_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.020e-19
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 1
Query:   10 LEPSSLSTKWVSTSSGPSEQGAVVVHPDSNTVIDSF--PSRPLNFVTIFGPARSGKSFVMNALARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTA-------------KGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQVCN 432
            ++PSS   KWVST+     +  + V P +  ++ S   P+ P+N V+I GPAR+GKS +MN L      F +S +V  CT G DLS++VV L +F                  +G  ED+ Y+ F DVEG GDE   H V+LA P +L+SKV + N
Sbjct:    1 MDPSSA-VKWVSTN----PEAKLKVSPAATNLLVSSTRPAAPVNLVSILGPARNGKSSLMNTLVGTGDTFAMSDSVKACTKGGDLSRSVVRLADFENTDRYQSDWATFRSTPNRGPDEDI-YVAFADVEGQGDECEEHDVRLATPFLLLSKVIIFN 150          
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: F0XZ34_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ34_AURAN)

HSP 1 Score: 88.6 bits (218), Expect = 1.590e-17
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 1
Query:   25 LSTKWVSTSSGPSEQGAVVVHPDSNTVIDSFPSRPLNFVTIFGPARSGKSFVMNALARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFT---GGTA--------------------KGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQVCN 432
            +ST W+S      ++  + V+P +   + S   +PL+ V++FG AR GKSF+MNAL+  +GVF VS A+ PCT G+D+S + +SLE+F    GG A                    +  S     +GF D EG GD    +  +L  P +L S+  + N
Sbjct:    1 MSTSWLSM-----KKDDLRVNPKATKFLSSLGDQPLHLVSVFGAARQGKSFLMNALSGMDGVFKVSNALEPCTQGIDVSTSTLSLEKFRAVGGGGAPAAGGGLLSWLPGWGPAAPPEAASGGDDLVGFCDAEGQGDRDVRYDARLVCPALLASRCVIFN 154          
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A6H5JVK0_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.220e-13
Identity = 52/145 (35.86%), Postives = 68/145 (46.90%), Query Frame = 1
Query:  115 FPSR-PLNFVTIFGPARSGKSFVMNAL-----------ARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFTGG---------------------------TAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQVCN 432
            FPS+ PLN +TI+G AR+GKSF MNAL           +    VF V     PCT G  +S T  SLE+ +                             T   + + +P IGFVDVEG GD+  S+  KL  P +L+SKV + N
Sbjct:    5 FPSKKPLNLITIWGNARTGKSFFMNALIAPERDDNNNASSEKDVFAVEGGSWPCTVGASMSTTTRSLEQISXXXXXXXXXXXXXXXXXXXXXRSSTEQALTGASQPQQLPDIGFVDVEGQGDKGDSYDTKLVAPLLLLSKVVIYN 149          
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A397VT81_9GLOM (GBP domain-containing protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397VT81_9GLOM)

HSP 1 Score: 73.6 bits (179), Expect = 3.250e-13
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  130 LNFVTIFGPARSGKSFVMNALARRNG----VFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQV 426
            +N ++IFGPAR+GKS +MN LA  N     +F  SP +   T+GVD+SKT V L+EF+      +  +   +GFVD EG G+      + L  P ++ SK+ +
Sbjct:   64 VNLISIFGPARTGKSTLMNILAGVNDYDNEIFKTSPDMETVTTGVDISKTFVPLKEFSKLNGNPEINNNTLVGFVDTEGQGNNGDEFDIYLFSPILVTSKIVI 166          
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A0M0K3M8_9EUKA (Guanylate-binding protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3M8_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 7.930e-13
Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   94 SNTVIDSFPSRPLNFVTIFGPARSGKSFVMNALARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQV 426
            +N V++ +   PLN +++ GP R GKS++MN+L   + VFGVS   V  T G+ LS  ++         A       P I F D+EG  D+  ++ +KLA P +++SKV +
Sbjct:  943 ANEVLEKYRDTPLNVISVCGPLRIGKSYLMNSLLEMDSVFGVSSQNVSFTRGIHLSSLLLPYSRLIPSEAT-----EPRIAFCDMEGQDDQGDAYDIKLATPLLIISKVVI 1048          
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A8H4EQQ1_GIGMA (E3 ubiquitin-protein ligase n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4EQQ1_GIGMA)

HSP 1 Score: 71.2 bits (173), Expect = 1.780e-11
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  130 LNFVTIFGPARSGKSFVMNALARRNG----VFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQV 426
            +N ++IFGPAR+GKS +MN LA  N     +F  SP +   T+GVD+SK  V L+EF+      +  +   +GFVD EG G+      + L  P ++ SK+ +
Sbjct:   77 VNLISIFGPARTGKSTLMNILAGVNDYDNEIFKTSPDMETVTTGVDISKAFVPLKEFSKLNGNPEINNNILVGFVDTEGQGNNGDEFDIYLFSPVLVTSKIVI 179          
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A8H4AXE3_GIGMA (E3 ubiquitin-protein ligase n=2 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4AXE3_GIGMA)

HSP 1 Score: 71.2 bits (173), Expect = 1.800e-11
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  130 LNFVTIFGPARSGKSFVMNALARRNG----VFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKV 420
            +N ++IFGPAR+GKS +MN LA  N     +F  SP +   T+GVD+SKT V L+EF+      +      +GFVD EG G+      + L  P ++ SK+
Sbjct:   76 VNLISIFGPARTGKSTLMNILAGVNDYDNEIFKTSPDMETVTTGVDISKTFVPLKEFSKLNGNMEVNSNILVGFVDTEGQGNNGDEFDICLFSPILVTSKI 176          
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A397W0H3_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397W0H3_9GLOM)

HSP 1 Score: 69.3 bits (168), Expect = 3.120e-11
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  130 LNFVTIFGPARSGKSFVMNALARRNG----VFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQV 426
            +N ++IFGPAR+GKS +MN LA  N     +F  SP +   T+GVD+SKT V ++ F+      +  +   +GFVD EG G+      + L  P ++ SK+ +
Sbjct:   64 VNLISIFGPARTGKSTLMNILAGVNDYDNEIFKTSPDMETVTTGVDISKTFVPVKAFSKLNDNPEINNNALVGFVDTEGQGNNGDEFDIYLFSPILVTSKIVI 166          
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A1Y2U6C9_9PEZI (GBP domain-containing protein n=1 Tax=Hypoxylon sp. EC38 TaxID=1001937 RepID=A0A1Y2U6C9_9PEZI)

HSP 1 Score: 70.1 bits (170), Expect = 4.420e-11
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  127 PLNFVTIFGPARSGKSFVMNALA--RRNGVFGVSPAVVPCTSGVDLSKTVVSLEEF--TGGTAKGKSEDMPY-IGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQVCNNS 438
            PLNF++I GP R GKS +MN LA      +F  +     CT G+DL   V++LE F  T G  K   E+    I F+D EG GD    + V L  P +L S++ + N +
Sbjct:  113 PLNFISIVGPTRGGKSTLMNLLAGCETKPLFNTASGSESCTKGIDLGNKVMTLENFSTTNGCEKVIPEESNQKIAFIDTEGQGDAGDKYDVILFTPAILCSRIIIFNTT 221          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ00_9PHAE9.680e-2042.54GBP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYG2_ECTSI1.020e-1939.10GBP4, guanylate-binding proteins n=1 Tax=Ectocarpu... [more]
F0XZ34_AURAN1.590e-1733.96Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6H5JVK0_9PHAE2.220e-1335.86GBP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A397VT81_9GLOM3.250e-1338.83GBP domain-containing protein n=1 Tax=Gigaspora ro... [more]
A0A0M0K3M8_9EUKA7.930e-1335.14Guanylate-binding protein n=1 Tax=Chrysochromulina... [more]
A0A8H4EQQ1_GIGMA1.780e-1137.86E3 ubiquitin-protein ligase n=1 Tax=Gigaspora marg... [more]
A0A8H4AXE3_GIGMA1.800e-1139.60E3 ubiquitin-protein ligase n=2 Tax=Gigaspora marg... [more]
A0A397W0H3_9GLOM3.120e-1136.89P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Y2U6C9_9PEZI4.420e-1138.53GBP domain-containing protein n=1 Tax=Hypoxylon sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86297contigS-dermatodea_contig86297:22..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue3.2e-19
Seed eggNOG ortholog2880.D8LML7
EggNOG free text desc.GTPase activity
EggNOG OGsKOG2037@1,KOG2037@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size462
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.8989046-CDS-S-dermatodea_contig86297:21..4831622925355.8989046-CDS-S-dermatodea_contig86297:21..483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86297 22..483 +
1694079877.8517146-CDS-S-dermatodea_contig86297:21..4831694079877.8517146-CDS-S-dermatodea_contig86297:21..483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86297 22..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86297.16775.1prot_S-dermatodea_contig86297.16775.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86297 22..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86297.16775.1

>prot_S-dermatodea_contig86297.16775.1 ID=prot_S-dermatodea_contig86297.16775.1|Name=mRNA_S-dermatodea_contig86297.16775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp
MNELEPSSLSTKWVSTSSGPSEQGAVVVHPDSNTVIDSFPSRPLNFVTIF
GPARSGKSFVMNALARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFTGGT
AKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQVCNNSYGLA
SAR*
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mRNA from alignment at S-dermatodea_contig86297:22..483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86297.16775.1 ID=mRNA_S-dermatodea_contig86297.16775.1|Name=mRNA_S-dermatodea_contig86297.16775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at S-dermatodea_contig86297:22..483+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATGAGCTTGAGCCCTCGAGTCTATCGACCAAATGGGTGTCTACGTC CTCTGGGCCTTCCGAGCAGGGCGCCGTGGTTGTCCATCCTGACTCGAACA CTGTAATAGACTCCTTTCCTTCCAGGCCCCTAAACTTTGTGACAATCTTC GGCCCAGCAAGAAGCGGGAAGTCCTTCGTCATGAACGCTCTGGCGCGCAG GAACGGCGTTTTCGGTGTGTCGCCTGCTGTAGTTCCTTGTACAAGTGGTG TCGACCTCTCGAAGACCGTGGTTTCTTTGGAGGAATTCACGGGGGGCACC GCAAAAGGAAAATCCGAGGACATGCCGTACATTGGCTTCGTCGACGTTGA AGGCTTGGGCGACGAACATCCCTCCCACCATGTCAAGCTGGCTATTCCAC CCATGCTGGTCTCCAAGGTGCAAGTGTGCAATAATTCCTATGGCCTCGCC TCCGCTCGATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig86297:22..483+

>mRNA_S-dermatodea_contig86297.16775.1 ID=mRNA_S-dermatodea_contig86297.16775.1|Name=mRNA_S-dermatodea_contig86297.16775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig86297:22..483+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATGAGCTTGAGCCCTCGAGTCTATCGACCAAATGGGTGTCTACGTC
CTCTGGGCCTTCCGAGCAGGGCGCCGTGGTTGTCCATCCTGACTCGAACA
CTGTAATAGACTCCTTTCCTTCCAGGCCCCTAAACTTTGTGACAATCTTC
GGCCCAGCAAGAAGCGGGAAGTCCTTCGTCATGAACGCTCTGGCGCGCAG
GAACGGCGTTTTCGGTGTGTCGCCTGCTGTAGTTCCTTGTACAAGTGGTG
TCGACCTCTCGAAGACCGTGGTTTCTTTGGAGGAATTCACGGGGGGCACC
GCAAAAGGAAAATCCGAGGACATGCCGTACATTGGCTTCGTCGACGTTGA
AGGCTTGGGCGACGAACATCCCTCCCACCATGTCAAGCTGGCTATTCCAC
CCATGCTGGTCTCCAAGGTGCAAGTGTGCAATAATTCCTATGGCCTCGCC
TCCGCTCGATAGATGAATGAGCTTGAGCCCTCGAGTCTATCGACCAAATG
GGTGTCTACGTCCTCTGGGCCTTCCGAGCAGGGCGCCGTGGTTGTCCATC
CTGACTCGAACACTGTAATAGACTCCTTTCCTTCCAGGCCCCTAAACTTT
GTGACAATCTTCGGCCCAGCAAGAAGCGGGAAGTCCTTCGTCATGAACGC
TCTGGCGCGCAGGAACGGCGTTTTCGGTGTGTCGCCTGCTGTAGTTCCTT
GTACAAGTGGTGTCGACCTCTCGAAGACCGTGGTTTCTTTGGAGGAATTC
ACGGGGGGCACCGCAAAAGGAAAATCCGAGGACATGCCGTACATTGGCTT
CGTCGACGTTGAAGGCTTGGGCGACGAACATCCCTCCCACCATGTCAAGC
TGGCTATTCCACCCATGCTGGTCTCCAAGGTGCAAGTGTGCAATAATTCC
TATGGCCTCGCCTCCGCTCGATAG
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