mRNA_S-dermatodea_contig86297.16775.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A6H5JJ00_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ00_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 9.680e-20 Identity = 57/134 (42.54%), Postives = 71/134 (52.99%), Query Frame = 1
Query: 34 KWVSTSSGPSEQGAVVVHPDSNTVIDSFPSRPLNFVTIFGPARSGKSFVMNALARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKG-----KSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKV 420
KWV+ + G + SN D + L+ VTI G AR KSF+MNAL RR+ F VSP PCT+G DLS ++ L EF G+A S P I FVD+EG GD V+LA P +L SKV
Sbjct: 6 KWVTATDGRLQATEEACERLSNVSDD----QSLSIVTILGAARQEKSFLMNALTRRDNGFRVSPEGYPCTAGADLSSILMPLSEFKRGSAGNTTHLPSSSPQPTIRFVDMEGQGDRSDERDVRLATPFLLGSKV 135
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: D7FYG2_ECTSI (GBP4, guanylate-binding proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG2_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 1.020e-19 Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 1
Query: 10 LEPSSLSTKWVSTSSGPSEQGAVVVHPDSNTVIDSF--PSRPLNFVTIFGPARSGKSFVMNALARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTA-------------KGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQVCN 432
++PSS KWVST+ + + V P + ++ S P+ P+N V+I GPAR+GKS +MN L F +S +V CT G DLS++VV L +F +G ED+ Y+ F DVEG GDE H V+LA P +L+SKV + N
Sbjct: 1 MDPSSA-VKWVSTN----PEAKLKVSPAATNLLVSSTRPAAPVNLVSILGPARNGKSSLMNTLVGTGDTFAMSDSVKACTKGGDLSRSVVRLADFENTDRYQSDWATFRSTPNRGPDEDI-YVAFADVEGQGDECEEHDVRLATPFLLLSKVIIFN 150
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: F0XZ34_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ34_AURAN) HSP 1 Score: 88.6 bits (218), Expect = 1.590e-17 Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 1
Query: 25 LSTKWVSTSSGPSEQGAVVVHPDSNTVIDSFPSRPLNFVTIFGPARSGKSFVMNALARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFT---GGTA--------------------KGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQVCN 432
+ST W+S ++ + V+P + + S +PL+ V++FG AR GKSF+MNAL+ +GVF VS A+ PCT G+D+S + +SLE+F GG A + S +GF D EG GD + +L P +L S+ + N
Sbjct: 1 MSTSWLSM-----KKDDLRVNPKATKFLSSLGDQPLHLVSVFGAARQGKSFLMNALSGMDGVFKVSNALEPCTQGIDVSTSTLSLEKFRAVGGGGAPAAGGGLLSWLPGWGPAAPPEAASGGDDLVGFCDAEGQGDRDVRYDARLVCPALLASRCVIFN 154
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A6H5JVK0_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK0_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 2.220e-13 Identity = 52/145 (35.86%), Postives = 68/145 (46.90%), Query Frame = 1
Query: 115 FPSR-PLNFVTIFGPARSGKSFVMNAL-----------ARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFTGG---------------------------TAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQVCN 432
FPS+ PLN +TI+G AR+GKSF MNAL + VF V PCT G +S T SLE+ + T + + +P IGFVDVEG GD+ S+ KL P +L+SKV + N
Sbjct: 5 FPSKKPLNLITIWGNARTGKSFFMNALIAPERDDNNNASSEKDVFAVEGGSWPCTVGASMSTTTRSLEQISXXXXXXXXXXXXXXXXXXXXXRSSTEQALTGASQPQQLPDIGFVDVEGQGDKGDSYDTKLVAPLLLLSKVVIYN 149
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A397VT81_9GLOM (GBP domain-containing protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397VT81_9GLOM) HSP 1 Score: 73.6 bits (179), Expect = 3.250e-13 Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query: 130 LNFVTIFGPARSGKSFVMNALARRNG----VFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQV 426
+N ++IFGPAR+GKS +MN LA N +F SP + T+GVD+SKT V L+EF+ + + +GFVD EG G+ + L P ++ SK+ +
Sbjct: 64 VNLISIFGPARTGKSTLMNILAGVNDYDNEIFKTSPDMETVTTGVDISKTFVPLKEFSKLNGNPEINNNTLVGFVDTEGQGNNGDEFDIYLFSPILVTSKIVI 166
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A0M0K3M8_9EUKA (Guanylate-binding protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3M8_9EUKA) HSP 1 Score: 75.1 bits (183), Expect = 7.930e-13 Identity = 39/111 (35.14%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 94 SNTVIDSFPSRPLNFVTIFGPARSGKSFVMNALARRNGVFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQV 426
+N V++ + PLN +++ GP R GKS++MN+L + VFGVS V T G+ LS ++ A P I F D+EG D+ ++ +KLA P +++SKV +
Sbjct: 943 ANEVLEKYRDTPLNVISVCGPLRIGKSYLMNSLLEMDSVFGVSSQNVSFTRGIHLSSLLLPYSRLIPSEAT-----EPRIAFCDMEGQDDQGDAYDIKLATPLLIISKVVI 1048
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A8H4EQQ1_GIGMA (E3 ubiquitin-protein ligase n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4EQQ1_GIGMA) HSP 1 Score: 71.2 bits (173), Expect = 1.780e-11 Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 1
Query: 130 LNFVTIFGPARSGKSFVMNALARRNG----VFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQV 426
+N ++IFGPAR+GKS +MN LA N +F SP + T+GVD+SK V L+EF+ + + +GFVD EG G+ + L P ++ SK+ +
Sbjct: 77 VNLISIFGPARTGKSTLMNILAGVNDYDNEIFKTSPDMETVTTGVDISKAFVPLKEFSKLNGNPEINNNILVGFVDTEGQGNNGDEFDIYLFSPVLVTSKIVI 179
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A8H4AXE3_GIGMA (E3 ubiquitin-protein ligase n=2 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4AXE3_GIGMA) HSP 1 Score: 71.2 bits (173), Expect = 1.800e-11 Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 1
Query: 130 LNFVTIFGPARSGKSFVMNALARRNG----VFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKV 420
+N ++IFGPAR+GKS +MN LA N +F SP + T+GVD+SKT V L+EF+ + +GFVD EG G+ + L P ++ SK+
Sbjct: 76 VNLISIFGPARTGKSTLMNILAGVNDYDNEIFKTSPDMETVTTGVDISKTFVPLKEFSKLNGNMEVNSNILVGFVDTEGQGNNGDEFDICLFSPILVTSKI 176
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A397W0H3_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397W0H3_9GLOM) HSP 1 Score: 69.3 bits (168), Expect = 3.120e-11 Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 1
Query: 130 LNFVTIFGPARSGKSFVMNALARRNG----VFGVSPAVVPCTSGVDLSKTVVSLEEFTGGTAKGKSEDMPYIGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQV 426
+N ++IFGPAR+GKS +MN LA N +F SP + T+GVD+SKT V ++ F+ + + +GFVD EG G+ + L P ++ SK+ +
Sbjct: 64 VNLISIFGPARTGKSTLMNILAGVNDYDNEIFKTSPDMETVTTGVDISKTFVPVKAFSKLNDNPEINNNALVGFVDTEGQGNNGDEFDIYLFSPILVTSKIVI 166
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Match: A0A1Y2U6C9_9PEZI (GBP domain-containing protein n=1 Tax=Hypoxylon sp. EC38 TaxID=1001937 RepID=A0A1Y2U6C9_9PEZI) HSP 1 Score: 70.1 bits (170), Expect = 4.420e-11 Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 1
Query: 127 PLNFVTIFGPARSGKSFVMNALA--RRNGVFGVSPAVVPCTSGVDLSKTVVSLEEF--TGGTAKGKSEDMPY-IGFVDVEGLGDEHPSHHVKLAIPPMLVSKVQVCNNS 438
PLNF++I GP R GKS +MN LA +F + CT G+DL V++LE F T G K E+ I F+D EG GD + V L P +L S++ + N +
Sbjct: 113 PLNFISIVGPTRGGKSTLMNLLAGCETKPLFNTASGSESCTKGIDLGNKVMTLENFSTTNGCEKVIPEESNQKIAFIDTEGQGDAGDKYDVILFTPAILCSRIIIFNTT 221 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86297.16775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig86297.16775.1 >prot_S-dermatodea_contig86297.16775.1 ID=prot_S-dermatodea_contig86297.16775.1|Name=mRNA_S-dermatodea_contig86297.16775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp MNELEPSSLSTKWVSTSSGPSEQGAVVVHPDSNTVIDSFPSRPLNFVTIFback to top mRNA from alignment at S-dermatodea_contig86297:22..483+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig86297.16775.1 ID=mRNA_S-dermatodea_contig86297.16775.1|Name=mRNA_S-dermatodea_contig86297.16775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at S-dermatodea_contig86297:22..483+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig86297:22..483+ >mRNA_S-dermatodea_contig86297.16775.1 ID=mRNA_S-dermatodea_contig86297.16775.1|Name=mRNA_S-dermatodea_contig86297.16775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig86297:22..483+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |