mRNA_S-dermatodea_contig86286.16774.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86286.16774.1
Unique NamemRNA_S-dermatodea_contig86286.16774.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig86286.16774.1 vs. uniprot
Match: D7FT33_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT33_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.640e-9
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:   10 VLRLSLQAEVRASEAKARRSKTTGSLVVTMPKVD 111
            VLRLSLQAEV+A EAKARRSKTTGSLVVTMPKVD
Sbjct:  370 VLRLSLQAEVKAGEAKARRSKTTGSLVVTMPKVD 403
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86286.16774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT33_ECTSI6.640e-994.12Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86286contigS-dermatodea_contig86286:21..140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog2880.D7FT33
KEGG koko:K19753
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.8683677-CDS-S-dermatodea_contig86286:20..1401622925355.8683677-CDS-S-dermatodea_contig86286:20..140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86286 21..140 -
1694079877.8383884-CDS-S-dermatodea_contig86286:20..1401694079877.8383884-CDS-S-dermatodea_contig86286:20..140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86286 21..140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86286.16774.1prot_S-dermatodea_contig86286.16774.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86286 21..140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86286.16774.1

>prot_S-dermatodea_contig86286.16774.1 ID=prot_S-dermatodea_contig86286.16774.1|Name=mRNA_S-dermatodea_contig86286.16774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=40bp
RPQVLRLSLQAEVRASEAKARRSKTTGSLVVTMPKVDRYQ
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mRNA from alignment at S-dermatodea_contig86286:21..140-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86286.16774.1 ID=mRNA_S-dermatodea_contig86286.16774.1|Name=mRNA_S-dermatodea_contig86286.16774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at S-dermatodea_contig86286:21..140- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCCTCAGGTGCTGCGTCTCAGCCTTCAAGCGGAGGTGAGGGCGAGCGA
GGCCAAGGCACGGAGGAGCAAGACGACGGGAAGCCTCGTGGTGACCATGC
CCAAGGTCGACCGGTACCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig86286:21..140-

>mRNA_S-dermatodea_contig86286.16774.1 ID=mRNA_S-dermatodea_contig86286.16774.1|Name=mRNA_S-dermatodea_contig86286.16774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig86286:21..140- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCCTCAGGTGCTGCGTCTCAGCCTTCAAGCGGAGGTGAGGGCGAGCGA
GGCCAAGGCACGGAGGAGCAAGACGACGGGAAGCCTCGTGGTGACCATGC
CCAAGGTCGACCGGTACCAGCGCCCTCAGGTGCTGCGTCTCAGCCTTCAA
GCGGAGGTGAGGGCGAGCGAGGCCAAGGCACGGAGGAGCAAGACGACGGG
AAGCCTCGTGGTGACCATGCCCAAGGTCGACCGGTACCAG
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