mRNA_S-dermatodea_contig86277.16773.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86277.16773.1
Unique NamemRNA_S-dermatodea_contig86277.16773.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86277.16773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86277contigS-dermatodea_contig86277:2..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.822824-UTR-S-dermatodea_contig86277:1..1561622925355.822824-UTR-S-dermatodea_contig86277:1..156Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86277 2..156 +
1694079877.8143618-UTR-S-dermatodea_contig86277:1..1561694079877.8143618-UTR-S-dermatodea_contig86277:1..156Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig86277 2..156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.8364384-CDS-S-dermatodea_contig86277:156..4591622925355.8364384-CDS-S-dermatodea_contig86277:156..459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86277 157..459 +
1694079877.8276298-CDS-S-dermatodea_contig86277:156..4591694079877.8276298-CDS-S-dermatodea_contig86277:156..459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86277 157..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86277.16773.1prot_S-dermatodea_contig86277.16773.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86277 157..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86277.16773.1

>prot_S-dermatodea_contig86277.16773.1 ID=prot_S-dermatodea_contig86277.16773.1|Name=mRNA_S-dermatodea_contig86277.16773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MSHELLIIISKLPVTIIPSPFSKPSRIAFPNLLVYILFLSFKSKHYIPIL
SSYACSHKSPLLQENSMQPKTQKQNKSQKTQIVITNSSQNRGAAHTTPGQ
*
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mRNA from alignment at S-dermatodea_contig86277:2..459+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86277.16773.1 ID=mRNA_S-dermatodea_contig86277.16773.1|Name=mRNA_S-dermatodea_contig86277.16773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at S-dermatodea_contig86277:2..459+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TATGCATCTTCATGTATGGCAAGTCAATTATACGCCAACGAAAATGCTAT
ATACTTTCCAAAATGTCCCATGATCTCCACAAATCTAACAACCCCCCTGC
TCGTATGCATCTTCATCCAATTATACGCCAATGAAAATGCTATATACATC
CCAAAATGTCCCATGAACTCCTCATAATTATTTCAAAACTACCAGTGACG
ATTATCCCCTCTCCATTCTCCAAACCATCACGGATTGCTTTTCCAAATTT
ACTCGTATATATCCTTTTTCTGTCATTCAAATCGAAACACTATATTCCAA
TACTCTCATCATACGCTTGTTCGCACAAATCCCCACTACTCCAAGAAAAT
TCCATGCAACCAAAAACACAAAAACAAAACAAGTCCCAAAAAACCCAAAT
CGTCATCACAAATTCATCACAAAATCGCGGTGCAGCTCACACGACTCCTG
GCCAATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig86277:2..459+

>mRNA_S-dermatodea_contig86277.16773.1 ID=mRNA_S-dermatodea_contig86277.16773.1|Name=mRNA_S-dermatodea_contig86277.16773.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig86277:2..459+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCCATGAACTCCTCATAATTATTTCAAAACTACCAGTGACGATTAT
CCCCTCTCCATTCTCCAAACCATCACGGATTGCTTTTCCAAATTTACTCG
TATATATCCTTTTTCTGTCATTCAAATCGAAACACTATATTCCAATACTC
TCATCATACGCTTGTTCGCACAAATCCCCACTACTCCAAGAAAATTCCAT
GCAACCAAAAACACAAAAACAAAACAAGTCCCAAAAAACCCAAATCGTCA
TCACAAATTCATCACAAAATCGCGGTGCAGCTCACACGACTCCTGGCCAA
TAGATGTCCCATGAACTCCTCATAATTATTTCAAAACTACCAGTGACGAT
TATCCCCTCTCCATTCTCCAAACCATCACGGATTGCTTTTCCAAATTTAC
TCGTATATATCCTTTTTCTGTCATTCAAATCGAAACACTATATTCCAATA
CTCTCATCATACGCTTGTTCGCACAAATCCCCACTACTCCAAGAAAATTC
CATGCAACCAAAAACACAAAAACAAAACAAGTCCCAAAAAACCCAAATCG
TCATCACAAATTCATCACAAAATCGCGGTGCAGCTCACACGACTCCTGGC
CAATAG
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