mRNA_S-dermatodea_contig8621.16768.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8621.16768.1
Unique NamemRNA_S-dermatodea_contig8621.16768.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8621.16768.1 vs. uniprot
Match: A0A6H5KV69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV69_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.310e-6
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    4 CAHDDCYKFPTYGEEGTTRRQFCAQHAPAGMIDFTR 111
            C H  C K P++GE GT R QFCA+HAP G++D +R
Sbjct:    6 CGHPSCNKNPSFGESGTRRAQFCAEHAPEGLVDVSR 41
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BLAST of mRNA_S-dermatodea_contig8621.16768.1 vs. uniprot
Match: D7G0R4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R4_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 9.070e-6
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 MCAHDDCYKFPTYGEEGTTRRQFCAQHAPAGMIDFTRK 114
             C+  +C K+PTYG EGT+ R++C +HA +GM+D  RK
Sbjct:   44 QCSGSNCGKYPTYGVEGTSNREYCREHALSGMVDVHRK 81
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BLAST of mRNA_S-dermatodea_contig8621.16768.1 vs. uniprot
Match: A0A6H5J7Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.030e-5
Identity = 19/38 (50.00%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 MCAHDDCYKFPTYGEEGTTRRQFCAQHAPAGMIDFTRK 114
             C+  +C K+PTYG EGT+ R++C +HA +GM+D  RK
Sbjct:   44 QCSGSNCGKYPTYGVEGTSNREYCREHALSGMVDVHRK 81
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8621.16768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KV69_9PHAE1.310e-655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0R4_ECTSI9.070e-650.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5J7Z7_9PHAE1.030e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8621contigS-dermatodea_contig8621:6444..6710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.5273302-CDS-S-dermatodea_contig8621:6443..67101622925355.5273302-CDS-S-dermatodea_contig8621:6443..6710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8621 6444..6710 +
1694079877.647954-CDS-S-dermatodea_contig8621:6443..67101694079877.647954-CDS-S-dermatodea_contig8621:6443..6710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8621 6444..6710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8621.16768.1prot_S-dermatodea_contig8621.16768.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8621 6444..6710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8621.16768.1

>prot_S-dermatodea_contig8621.16768.1 ID=prot_S-dermatodea_contig8621.16768.1|Name=mRNA_S-dermatodea_contig8621.16768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MCAHDDCYKFPTYGEEGTTRRQFCAQHAPAGMIDFTRKCAIVGCYTHATY
GDVSGTRKRKFCAKHVAEGVAPEEMKTCRGSGCRKSPTF
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mRNA from alignment at S-dermatodea_contig8621:6444..6710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8621.16768.1 ID=mRNA_S-dermatodea_contig8621.16768.1|Name=mRNA_S-dermatodea_contig8621.16768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at S-dermatodea_contig8621:6444..6710+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCGCCCACGACGACTGTTACAAGTTTCCCACGTACGGCGAAGAAGG
CACCACGAGGCGGCAGTTCTGCGCCCAGCACGCCCCCGCCGGGATGATCG
ACTTCACGCGGAAGTGCGCCATCGTCGGGTGCTACACGCACGCCACGTAC
GGGGACGTCTCGGGGACCCGGAAGCGAAAATTTTGCGCCAAGCACGTCGC
CGAAGGGGTGGCCCCCGAAGAGATGAAGACCTGCCGCGGATCCGGGTGCC
GGAAGAGTCCGACGTTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8621:6444..6710+

>mRNA_S-dermatodea_contig8621.16768.1 ID=mRNA_S-dermatodea_contig8621.16768.1|Name=mRNA_S-dermatodea_contig8621.16768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig8621:6444..6710+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCGCCCACGACGACTGTTACAAGTTTCCCACGTACGGCGAAGAAGG
CACCACGAGGCGGCAGTTCTGCGCCCAGCACGCCCCCGCCGGGATGATCG
ACTTCACGCGGAAGTGCGCCATCGTCGGGTGCTACACGCACGCCACGTAC
GGGGACGTCTCGGGGACCCGGAAGCGAAAATTTTGCGCCAAGCACGTCGC
CGAAGGGGTGGCCCCCGAAGAGATGAAGACCTGCCGCGGATCCGGGTGCC
GGAAGAGTCCGACGTTCATGTGCGCCCACGACGACTGTTACAAGTTTCCC
ACGTACGGCGAAGAAGGCACCACGAGGCGGCAGTTCTGCGCCCAGCACGC
CCCCGCCGGGATGATCGACTTCACGCGGAAGTGCGCCATCGTCGGGTGCT
ACACGCACGCCACGTACGGGGACGTCTCGGGGACCCGGAAGCGAAAATTT
TGCGCCAAGCACGTCGCCGAAGGGGTGGCCCCCGAAGAGATGAAGACCTG
CCGCGGATCCGGGTGCCGGAAGAGTCCGACGTTC
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