mRNA_S-dermatodea_contig862.16766.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig862.16766.1
Unique NamemRNA_S-dermatodea_contig862.16766.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: D8LLL2_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL2_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 6.030e-19
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASSRPLSFDCCALSL 301
            MGRNQHSKDRLFLTATEWKRDYGGKK  KN +SRPL+FDCCALSL
Sbjct:    1 MGRNQHSKDRLFLTATEWKRDYGGKKADKNGASRPLAFDCCALSL 45
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: A0A7S3UXG8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXG8_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 1.690e-14
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASSRPLSFDCCALSL 301
            MG+NQHSKDR+F+TATEWK +YGG K  K +S R L FDCCALSL
Sbjct:    1 MGKNQHSKDRMFITATEWKEEYGGHKKKKESSDRQLPFDCCALSL 45
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: A0A836CDG8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.090e-13
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASSRPLSFDCCALSL 301
            M R +HSKDR+F+TATEW RDYGGKK   N+  RPLSFDCCA+SL
Sbjct:    1 MPRGKHSKDRMFVTATEWSRDYGGKKGAVNSGIRPLSFDCCAMSL 45
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: A0A482SFT6_9ARCH (U-box domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFT6_9ARCH)

HSP 1 Score: 63.9 bits (154), Expect = 4.090e-11
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASS--RPLSFDCCALSL 301
            MG+N+HSKDR+++TATEW  +YGGKK   N+ +  RPL FD CALSL
Sbjct:    1 MGKNKHSKDRIYITATEWATEYGGKKREANSGNQTRPLPFDHCALSL 47
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: A0A7S2B164_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B164_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.030e-10
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASSRPLSFDCCALSL 301
            M +NQHSKDRL++T TEWK +YGGKK  K +S+  L FD CALSL
Sbjct:   18 MPKNQHSKDRLYITQTEWKYEYGGKKRQKRSSTGQLPFDSCALSL 62
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: R1DG82_EMIHU (RING-type E3 ubiquitin transferase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DG82_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 3.790e-10
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASSRPLSFDCCALSL 301
            MG+ QHSKD+L++T TEWK+D+GG K+ K+   + L FDCCA+SL
Sbjct:    1 MGKKQHSKDQLYITQTEWKKDWGGAKSNKHIPYKVLPFDCCAISL 45
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: A0A7R9YCF3_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCF3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.200e-10
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASSR--PLSFDCCALSL 301
            MGRNQHSKDRLFLT TEW+RD+GG+   ++   +   L FDCCAL+L
Sbjct:    1 MGRNQHSKDRLFLTTTEWRRDHGGRAVERSRGPKYEALPFDCCALTL 47
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: F2UHV0_SALR5 (RING-type E3 ubiquitin transferase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UHV0_SALR5)

HSP 1 Score: 63.2 bits (152), Expect = 1.790e-9
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKT---GKNASSRPLSFDCCALSL 301
            MG+NQHSKDRLF+TA+EW   YGGKK    G +A  + L FDCC LSL
Sbjct:    1 MGKNQHSKDRLFITASEWATLYGGKKKEAPGASAKYKKLPFDCCCLSL 48
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: W7T7R4_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7R4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.340e-9
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASS-RPLSFDCCALSL 301
            MG+ QHSKDR+FLTATEWK + GGK+     SS RPL+FD CALSL
Sbjct:    1 MGKKQHSKDRMFLTATEWK-ELGGKREAAGRSSYRPLAFDSCALSL 45
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BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Match: A0A024UND7_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UND7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.170e-8
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:  167 MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASSRPLSFDCCALSL 301
            MG+NQHSKDR+F+TA+E K  YGGKK     + R L FDCCA++L
Sbjct:    1 MGKNQHSKDRMFITASEHKYLYGGKKDAVKTAYRRLPFDCCAITL 45
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig862.16766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLL2_ECTSI6.030e-1988.89RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A7S3UXG8_HETAK1.690e-1471.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CDG8_9STRA2.090e-1371.11RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A482SFT6_9ARCH4.090e-1161.70U-box domain-containing protein n=1 Tax=archaeon T... [more]
A0A7S2B164_9STRA1.030e-1064.44Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
R1DG82_EMIHU3.790e-1057.78RING-type E3 ubiquitin transferase n=1 Tax=Emilian... [more]
A0A7R9YCF3_9STRA5.200e-1061.70RING-type E3 ubiquitin transferase n=1 Tax=Pinguio... [more]
F2UHV0_SALR51.790e-962.50RING-type E3 ubiquitin transferase n=1 Tax=Salping... [more]
W7T7R4_9STRA6.340e-967.39RING-type E3 ubiquitin transferase n=2 Tax=Monodop... [more]
A0A024UND7_9STRA1.170e-860.00RING-type E3 ubiquitin transferase n=2 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig862contigS-dermatodea_contig862:1508..2982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog2880.D8LLL2
Preferred namePPIL2
KEGG koko:K06532,ko:K10598
KEGG Pathwayko04120,ko05202,map04120,map05202
GOsGO:0000003,GO:0000209,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0002376,GO:0003006,GO:0003674,GO:0003755,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005796,GO:0005886,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0007530,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016477,GO:0016567,GO:0016740,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0018992,GO:0019538,GO:0019787,GO:0022414,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0033036,GO:0034450,GO:0034613,GO:0034641,GO:0036211,GO:0040011,GO:0040021,GO:0040022,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0048870,GO:0050900,GO:0051179,GO:0051641,GO:0051674,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0070727,GO:0071704,GO:0071944,GO:0072657,GO:0072659,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990778
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0883@2759
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-04_005350.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko03110,ko04090,ko04121,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size303
Cds size135
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig862.16766.1prot_S-dermatodea_contig862.16766.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig862 1508..2816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.1660767-CDS-S-dermatodea_contig862:1507..15911622925355.1660767-CDS-S-dermatodea_contig862:1507..1591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig862 1508..1591 -
1694079877.353394-CDS-S-dermatodea_contig862:1507..15911694079877.353394-CDS-S-dermatodea_contig862:1507..1591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig862 1508..1591 -
1622925355.186676-CDS-S-dermatodea_contig862:2765..28161622925355.186676-CDS-S-dermatodea_contig862:2765..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig862 2766..2816 -
1694079877.3703325-CDS-S-dermatodea_contig862:2765..28161694079877.3703325-CDS-S-dermatodea_contig862:2765..2816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig862 2766..2816 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.2005243-UTR-S-dermatodea_contig862:2816..29821622925355.2005243-UTR-S-dermatodea_contig862:2816..2982Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig862 2817..2982 -
1694079877.3807564-UTR-S-dermatodea_contig862:2816..29821694079877.3807564-UTR-S-dermatodea_contig862:2816..2982Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig862 2817..2982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig862.16766.1

>prot_S-dermatodea_contig862.16766.1 ID=prot_S-dermatodea_contig862.16766.1|Name=mRNA_S-dermatodea_contig862.16766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
MGRNQHSKDRLFLTATEWKRDYGGKKTGKNASSRPLSFDCCALSL
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mRNA from alignment at S-dermatodea_contig862:1508..2982-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig862.16766.1 ID=mRNA_S-dermatodea_contig862.16766.1|Name=mRNA_S-dermatodea_contig862.16766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1475bp|location=Sequence derived from alignment at S-dermatodea_contig862:1508..2982- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGTCTGTGTGTGTAGGCTTGGACAACTTGGAGAACAGCAAGTGAACCT
CACGCTCTTCTGAGACATACAGGATATTGAATAGGTCGTCGCCGTGGAAG
TGGTCGTCTCCCTTGAGTTTGTTTGAGAGGTCCGTCCAGCTCGGTTGAAG
GGAGACAAGACACAGCATGGGTCGGAATCAGCACTCCAAAGACAGGTTGT
TCCTCACAGCTACCGAGGCAAGTCTATAGCTTGTACGAGCCGTGCTGGCA
GGGGTGTTGGTACAGATAGACTAGAGAAAAGAGGGGGCGTGGGTTTGAAT
ATGTATCCCGTCGTTTTTGGCAGCTGTGAGAGAAGGCGGTTGCCCATTGC
CCAACACAACCCTAGGTAAGTTGTCGTAGTGTATCATGCCACCATACTTG
TAGATCAAGGCAAAGCGTATTTTCCAAGGACGATCTACAAGTAAAGTAGC
AGTGACCAAGTACTGTAGCAACATAGGTACCGATCAAGGCTTCGACTTGT
ACCAGTAAGTATAGCTTCGACTTGAAGGTTACCAACGGGAGGCCTTGCAC
CTCTACCTCTCGAGGCGATTGATCGACACTCAATTACGCTCTCTGCAGCA
TTTGCAGCAGATTTATGAGCGACTTGAAGTATGCGCAGTCAAAGCATCTG
TCTCCCAGTGCGCTTGAATGACCAGACCCCCATTTAAGCGCCTTGGGCGA
GTTAGAGGGCACTGCTATCATACAAGTATTGTAAGCAGGAGTGTGACAGC
ACTTCTGTTGATTGATTGATTGATTGATTTGATTGACAGCACTTCTGTAC
AAGTATAATAACTTCAACGGAATGCCCGCGATACGGACGCGATACCATCG
CCTTCTTACCACCTTCCAATGGCGAGTTCGCCATAACCACCCCCACTTTG
ATATCCTCCATGAAGAAGGTCGATAGAAACGGGAGCATGGCTGCTGCAGC
AAGGAGAGAGCTGTCTTCCAATGTACTGTAGTGCTTCACATGTCAAACCC
TCACCTGCGCTTGAATCTCCCCGTTTTGAAGAGACTCCGCACACGACTTG
TACATATTGTGTACCTATGAGACGTGTACTTGGTACTTGTATAGAGCTCT
ACAATATACTCGTAGAGCGTACTCTGTATCATATGATATGATAAAAATAA
TGAACGTGATAACATCGCCTCTGCAACGGCAGCCAAAACGTATAAAACGA
AGGTTGCCCGTGACGCCCTCTGACGCTTTGCACCCCCCCCCCCCCTCGCC
GTGCTCTGCCTACCTCGTGGGGTGAGTGTACATCTTGTTTATTTCGACTA
TAGAAATATTATATACAAGTACTACTCTGTAATCATGTATGTATGATACC
TGTACTGATGCTTTGCTTTGACGATTTTGTGCACACAACAGTGGAAGCGG
GACTATGGAGGCAAGAAGACGGGCAAGAACGCCTCCTCGAGGCCGCTTTC
GTTCGACTGCTGCGCTCTCTCGCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig862:1508..2982-

>mRNA_S-dermatodea_contig862.16766.1 ID=mRNA_S-dermatodea_contig862.16766.1|Name=mRNA_S-dermatodea_contig862.16766.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig862:1508..2982- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTCGGAATCAGCACTCCAAAGACAGGTTGTTCCTCACAGCTACCGA
GATGGGTCGGAATCAGCACTCCAAAGACAGGTTGTTCCTCACAGCTACCG
AGTGGAAGCGGGACTATGGAGGCAAGAAGACGGGCAAGAACGCCTCCTCG
AGGCCGCTTTCGTTCGACTGCTGCGCTCTCTCGCTGTGGAAGCGGGACTA
TGGAGGCAAGAAGACGGGCAAGAACGCCTCCTCGAGGCCGCTTTCGTTCG
ACTGCTGCGCTCTCTCGCTG
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