mRNA_S-dermatodea_contig8615.16765.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8615.16765.1
Unique NamemRNA_S-dermatodea_contig8615.16765.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: B3VN01_FUCSE (14-3-3-like protein (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=B3VN01_FUCSE)

HSP 1 Score: 240 bits (613), Expect = 7.570e-80
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 372
            RYLAEFQSAD+RKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL
Sbjct:   31 RYLAEFQSADERKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 154          
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: 1433_FUCVE (14-3-3-like protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=1433_FUCVE)

HSP 1 Score: 226 bits (576), Expect = 7.870e-73
Identity = 118/125 (94.40%), Postives = 121/125 (96.80%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLI-MQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 372
            RYLAEFQSAD+RKTSASDALDAYQ AS+ ANQDLPPTHPIRLGLALNFSVFYYEILNSP+RAC LAKAAFDDAIAELDTLSEESYKDSTLI MQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL
Sbjct:  127 RYLAEFQSADERKTSASDALDAYQLASDHANQDLPPTHPIRLGLALNFSVFYYEILNSPDRACGLAKAAFDDAIAELDTLSEESYKDSTLIIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 251          
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: A0A835YSI6_9STRA (14-3-3-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI6_9STRA)

HSP 1 Score: 201 bits (510), Expect = 7.720e-63
Identity = 102/124 (82.26%), Postives = 112/124 (90.32%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 372
            RYL+EFQ+ D RK S+  AL+AYQ A+E ++QDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGE +EA  +ADGT VED+
Sbjct:  125 RYLSEFQAHDARKESSDKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDEAGADADGTRVEDM 248          
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: A0A8J2SJV0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJV0_9STRA)

HSP 1 Score: 194 bits (493), Expect = 3.110e-60
Identity = 99/124 (79.84%), Postives = 110/124 (88.71%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 372
            RYLAEFQSAD RK S+S AL++YQ AS++AN+DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD  +      NADGT V+DL
Sbjct:  129 RYLAEFQSADKRKESSSSALESYQQASQIANKDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDNADNNH-DNNADGTAVQDL 251          
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: F0YPF8_AURAN (14_3_3 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPF8_AURAN)

HSP 1 Score: 192 bits (489), Expect = 1.180e-59
Identity = 100/125 (80.00%), Postives = 114/125 (91.20%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGE-AEEAPGNADGTVVEDL 372
            RYLAEFQ+ D RKTS+S+AL++YQ+AS++AN+DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD  E A +A G  DGT VED+
Sbjct:  127 RYLAEFQAPDRRKTSSSEALESYQNASQIANKDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDNAETAHDATG--DGTQVEDV 249          
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: A0A7S2C9C0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9C0_9STRA)

HSP 1 Score: 184 bits (467), Expect = 5.750e-58
Identity = 95/124 (76.61%), Postives = 107/124 (86.29%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 372
            RYLAEFQ  DDRK S++DAL+AY+SA  +A+Q+LPPTHPIRLGLALNFSVFYYEI++SP+RAC+LAK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ E     G  +   VEDL
Sbjct:    7 RYLAEFQHTDDRKKSSNDALEAYKSAQTIASQELPPTHPIRLGLALNFSVFYYEIMSSPDRACHLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQDE--NPSGTGEDPQVEDL 128          
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: A0A7S1DWJ1_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DWJ1_9STRA)

HSP 1 Score: 181 bits (460), Expect = 7.380e-57
Identity = 94/114 (82.46%), Postives = 105/114 (92.11%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQG-EAEEAP 339
            RYL+EFQ+AD RK SA+ ALDAYQ+AS +A+ DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AK AFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ  EA +AP
Sbjct:   11 RYLSEFQTADVRKASATAALDAYQAASGIASTDLPPTHPIRLGLALNFSVFYYEILNSPDRACSIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQAAEAGDAP 124          
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: A0A7S3IA22_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3IA22_9CILI)

HSP 1 Score: 184 bits (467), Expect = 3.130e-56
Identity = 92/111 (82.88%), Postives = 102/111 (91.89%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEE 333
            RYLAEFQS +DRKTS+S AL AY+SAS +AN DLPPTHPIRLGLALNFSVF+YEI+NSP+RAC LAK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS+Q + +E
Sbjct:  143 RYLAEFQSGEDRKTSSSSALSAYESASGIANSDLPPTHPIRLGLALNFSVFFYEIMNSPDRACQLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSEQEQTDE 253          
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: F0YC30_AURAN (14_3_3 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC30_AURAN)

HSP 1 Score: 184 bits (466), Expect = 3.720e-56
Identity = 95/124 (76.61%), Postives = 105/124 (84.68%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 372
            RYLAEFQ+++ R  S+SDALDAYQ AS +AN+DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD     EA     G  V D+
Sbjct:  127 RYLAEFQASEVRNKSSSDALDAYQEASRIANKDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDNAVDVEASNAEGGGQVGDV 250          
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Match: B8BX06_THAPS (14-3-3-like protein n=3 Tax=Thalassiosirales TaxID=33847 RepID=B8BX06_THAPS)

HSP 1 Score: 183 bits (465), Expect = 4.820e-56
Identity = 94/112 (83.93%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEA 336
            RYL+EFQ  D RK SAS ALDAYQSA+E+A+ DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ    EA
Sbjct:  125 RYLSEFQQGDVRKASASAALDAYQSATEVASSDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQAADAEA 236          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8615.16765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VN01_FUCSE7.570e-8099.1914-3-3-like protein (Fragment) n=1 Tax=Fucus serra... [more]
1433_FUCVE7.870e-7394.4014-3-3-like protein n=3 Tax=Phaeophyceae TaxID=287... [more]
A0A835YSI6_9STRA7.720e-6382.2614-3-3-like protein n=2 Tax=Tribonema minus TaxID=... [more]
A0A8J2SJV0_9STRA3.110e-6079.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YPF8_AURAN1.180e-5980.0014_3_3 domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S2C9C0_9STRA5.750e-5876.61Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1DWJ1_9STRA7.380e-5782.46Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3IA22_9CILI3.130e-5682.88Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
F0YC30_AURAN3.720e-5676.6114_3_3 domain-containing protein n=1 Tax=Aureococc... [more]
B8BX06_THAPS4.820e-5683.9314-3-3-like protein n=3 Tax=Thalassiosirales TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8615contigS-dermatodea_contig8615:904..1741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.6
Seed ortholog evalue8e-61
Seed eggNOG ortholog2880.D7FN58
KEGG koko:K06630
KEGG Pathwayko04011,ko04110,ko04114,ko04151,ko04390,ko04391,ko04722,ko05169,ko05203,map04011,map04110,map04114,map04151,map04390,map04391,map04722,map05169,map05203
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0031410,GO:0031982,GO:0042470,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048770,GO:0097708
EggNOG free text desc.protein domain specific binding
EggNOG OGsCOG5040@1,KOG0841@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog description14-3-3-like protein
Ec32 orthologEc-06_008490.1
Exons2
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.1275566-CDS-S-dermatodea_contig8615:903..11071622925355.1275566-CDS-S-dermatodea_contig8615:903..1107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8615 904..1107 +
1694079877.3217902-CDS-S-dermatodea_contig8615:903..11071694079877.3217902-CDS-S-dermatodea_contig8615:903..1107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8615 904..1107 +
1622925355.138236-CDS-S-dermatodea_contig8615:1570..17411622925355.138236-CDS-S-dermatodea_contig8615:1570..1741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8615 1571..1741 +
1694079877.334794-CDS-S-dermatodea_contig8615:1570..17411694079877.334794-CDS-S-dermatodea_contig8615:1570..1741Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8615 1571..1741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8615.16765.1prot_S-dermatodea_contig8615.16765.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8615 904..1741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8615.16765.1

>prot_S-dermatodea_contig8615.16765.1 ID=prot_S-dermatodea_contig8615.16765.1|Name=mRNA_S-dermatodea_contig8615.16765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
RYLAEFQSADDRKTSASDALDAYQSASELANQDLPPTHPIRLGLALNFSV
FYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLT
LWTSDQGEAEEAPGNADGTVVEDL*
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mRNA from alignment at S-dermatodea_contig8615:904..1741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8615.16765.1 ID=mRNA_S-dermatodea_contig8615.16765.1|Name=mRNA_S-dermatodea_contig8615.16765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=838bp|location=Sequence derived from alignment at S-dermatodea_contig8615:904..1741+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTATCTTGCCGAGTTCCAGTCCGCGGACGACCGCAAGACTAGCGCATC CGACGCGCTCGACGCGTACCAGTCGGCATCCGAGCTCGCCAACCAGGACC TGCCCCCGACTCACCCGATCCGCCTGGGCCTCGCCCTCAACTTTTCTGTT TTCTACTACGAGATCCTTAACTCACCGGAGCGCGCGTGCAACTTGGCAAA GGCTGTGAGTGTGCATTTGGGTTTTGGCGCACACATGAGAGATGATGGGA TAATAAGTAGTTTCTGTTTGTTTTTTTTTCTTGGGTGGTGGTTTTTTGTG CATTGATTGATGATGTATGTCTCTTTGTGTGAGGTTGGGATGTTTTGGTA TTTGTTCAAAGGAAAATAGCTTTTATTTGTGATAACGAGGCTTAAGTTAC AAGGAGAGAAATGGCGCGGTGATTTTTTTCCTGGTTACGCGTAGACGGTA TGGGAAGAAAACACATTTTTTTTTCTAATCTTAGATAATCGGACAACAAT GCGCTGCTAGCTACTACTACCTACTGTATGTATGAGATAATGAGATCATA AATGGTGAACTACTTCGGGCTTATATATTTCCCTCCCCCCCCTTTTTCCT TGTCTCCCTGCCGCCCCCTCTCTCCCTCCGAATATATTGCCCTTTGAAAA CAATACTAACAATACAGGCGTTCGACGACGCAATTGCGGAGCTCGACACC CTCTCGGAGGAGTCGTACAAAGACTCTACCCTCATCATGCAGCTCCTGCG CGACAACCTCACCCTCTGGACATCGGACCAGGGAGAGGCGGAAGAGGCGC CCGGAAACGCGGATGGCACGGTCGTGGAGGACCTCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8615:904..1741+

>mRNA_S-dermatodea_contig8615.16765.1 ID=mRNA_S-dermatodea_contig8615.16765.1|Name=mRNA_S-dermatodea_contig8615.16765.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig8615:904..1741+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTATCTTGCCGAGTTCCAGTCCGCGGACGACCGCAAGACTAGCGCATC
CGACGCGCTCGACGCGTACCAGTCGGCATCCGAGCTCGCCAACCAGGACC
TGCCCCCGACTCACCCGATCCGCCTGGGCCTCGCCCTCAACTTTTCTGTT
TTCTACTACGAGATCCTTAACTCACCGGAGCGCGCGTGCAACTTGGCAAA
GGCTAGGTATCTTGCCGAGTTCCAGTCCGCGGACGACCGCAAGACTAGCG
CATCCGACGCGCTCGACGCGTACCAGTCGGCATCCGAGCTCGCCAACCAG
GACCTGCCCCCGACTCACCCGATCCGCCTGGGCCTCGCCCTCAACTTTTC
TGTTTTCTACTACGAGATCCTTAACTCACCGGAGCGCGCGTGCAACTTGG
CAAAGGCTGCGTTCGACGACGCAATTGCGGAGCTCGACACCCTCTCGGAG
GAGTCGTACAAAGACTCTACCCTCATCATGCAGCTCCTGCGCGACAACCT
CACCCTCTGGACATCGGACCAGGGAGAGGCGGAAGAGGCGCCCGGAAACG
CGGATGGCACGGTCGTGGAGGACCTCTAAGCGTTCGACGACGCAATTGCG
GAGCTCGACACCCTCTCGGAGGAGTCGTACAAAGACTCTACCCTCATCAT
GCAGCTCCTGCGCGACAACCTCACCCTCTGGACATCGGACCAGGGAGAGG
CGGAAGAGGCGCCCGGAAACGCGGATGGCACGGTCGTGGAGGACCTCTAA
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