mRNA_S-dermatodea_contig8614.16764.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8614.16764.1
Unique NamemRNA_S-dermatodea_contig8614.16764.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A6H5L4T7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4T7_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 8.910e-86
Identity = 161/297 (54.21%), Postives = 210/297 (70.71%), Query Frame = 1 
Query:    1 GDVASPLLSASSSMNTVIEGGKNNKQTTRLQRLQGMTTKETASEVALRA-CFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKG-TVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLLICSCWKPEACRDG--GRRGGARGKGRKTLPEEEQEELGADGEKLAVGPAAVSVAQEVSMEAMKKPFRAMYDERRRLVTPEFMDKYVPKGVTLETLQPVL 879
            G  ASPLLSA S MNT+IEGG+++K T +LQ+LQGM  KE+ASE AL+   F +VRE  + LGL  ++QE ACLLLR+AED GLFK KK  RG A+C AVT +TCR W   +TM+++S   ++SL+ +NKA K L  NL +++  ++RG H IP LC KL +PPF+ +AA+H AQQAS  DLV GM P+ VAAAAVLL+CSCW P AC DG   RR     K RKT   ++Q++   +GE   V PAAVS A   ++ AMK+PFRAMY++R RL T EF+++   K VTLETL+P+L
Sbjct:   67 GAAASPLLSAKSGMNTLIEGGQDSKLTAKLQKLQGMAVKESASERALKMDFFGKVREFGNRLGLTHAMQEHACLLLRKAEDSGLFKVKKAERGVAICVAVTLLTCRQWRRGQTMKEMSTMFNVSLKALNKAVKKL-SNLEIERAPSLRGEHHIPLLCDKLGLPPFVSVAARHAAQQASRWDLVDGMKPSAVAAAAVLLVCSCWNPAACGDGVVDRRSK---KARKT---QQQQQAAVEGETWDVRPAAVSEAGGTTVMAMKRPFRAMYEQRGRLFTVEFLERRAAKEVTLETLKPIL 356
[Close]
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A520K3T5_9EURY (Transcription initiation factor IIB n=1 Tax=Methanophagales archaeon ANME-1-THS TaxID=2491082 RepID=A0A520K3T5_9EURY)

HSP 1 Score: 85.9 bits (211), Expect = 1.460e-14
Identity = 53/169 (31.36%), Postives = 88/169 (52.07%), Query Frame = 1 
Query:   91 QRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLLICS 597
            +R+ G+ + ++ SE  L      +  +A  LGLP++I+E A LL R+A    L K +     + + +AV YITCR +GV RT+++++    + L+ + +A   L KNL L       TH IP+ C +L +       A  + ++   +    G GP G AAAA+ L  +
Sbjct:   84 KRMHGLISMDS-SEKTLSFALGEIDRMASALGLPTNIKEAASLLYRKAVKQNLIKGRSI---EELGSAVLYITCRQYGVPRTLKEVAAVSRMPLKKIRRAYIFLLKNLELRLTPPDPTHYIPRFCSELGLSDATRERAIALMRETRNMAAAKGWGPTGTAAAAIYLAAN 248
[Close]
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A2V3JLQ8_9EURY (Transcription initiation factor IIB n=2 Tax=Methanomicrobia TaxID=224756 RepID=A0A2V3JLQ8_9EURY)

HSP 1 Score: 81.6 bits (200), Expect = 4.260e-13
Identity = 47/168 (27.98%), Postives = 89/168 (52.98%), Query Frame = 1 
Query:   85 RLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 588
            +L++ Q  T     +E +     + +  ++  L LP SI+E A +L R+A    L + +     + + +A+ YITCR +GV RT+ ++ +   +S +++++A + L + L+L          +P+ C  L +   I   A  + ++ASE +L  G GP G+AAAA+ +
Sbjct:  104 KLKKWQQRTHIANTTERSFIFALSEIERMSSALKLPVSIREAASMLYRKAMKKHLIRGRSI---EGITSAILYITCRQYGVPRTLEEVREVSRVSQKEISRAYRFLLRELDLKISPASPIDFVPRFCSMLGLGGDIRAKAIEIIKKASEKELTNGRGPIGIAAAAIYI 268
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BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A662RQX3_9EURY (Transcription initiation factor IIB n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A662RQX3_9EURY)

HSP 1 Score: 80.9 bits (198), Expect = 8.110e-13
Identity = 51/183 (27.87%), Postives = 94/183 (51.37%), Query Frame = 1 
Query:   40 MNTVIEGGKNNKQTTRLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 588
            ++TV+  G    Q  RL++ Q  T     +E +     + +  +A  L LP +I+E A +L R+A    L + +     + + +A+ YITCR +GV RT+ ++ +   +  +++++A + L + LNL          +P+ C  L +   I   A  +  +A+E +L  G GP G+AAAA+ +
Sbjct:   94 LSTVVTWGPQG-QGQRLKKWQQRTHIANTTERSFIFALSEIDRMACALRLPVNIREAASMLYRKAMKKRLIRGRSI---EGITSALLYITCRQYGVPRTLEEVREISRVGQKEISRAYRFLLRELNLKISPTSPVDFVPRFCSLLGLGSDIRAKAIEIINKATEAELTNGRGPIGIAAAAIYI 272
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BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A843DR40_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Methanomethylophilus sp. TaxID=2774294 RepID=A0A843DR40_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 1.060e-12
Identity = 47/155 (30.32%), Postives = 81/155 (52.26%), Query Frame = 1 
Query:  124 ASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 588
            ++E  L    + +  +A   GLP S+++ A L+ R A +  L K +       + AA  Y +CR  G+ RT+ ++++  ++  R++ +  +HL K L L     R    I + C  L +   +   A  + ++ASE DL+ G+GPAGV AAAV +
Sbjct:   11 SAERNLAFALSEIDRVATANGLPRSVRDSAGLVYRSAVERNLVKGRPID---VLAAASVYCSCRISGIPRTLDEIAENANIGRRELGRTYRHLSKELGLGLSPARPQDYIGRYCDALKLGTEVRERALSLIRKASENDLLSGLGPAGVTAAAVYI 162
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BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A843ECA6_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Methanomethylophilus sp. TaxID=2774294 RepID=A0A843ECA6_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 1.220e-12
Identity = 48/160 (30.00%), Postives = 83/160 (51.88%), Query Frame = 1 
Query:  109 TTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 588
            T +  ++E  L    + +  +A   GLP S+++ A L+ R A +  L K +       + AA  Y +CR  G+ RT+ ++++  ++  R++ +  +HL K L L     R    I + C  L +   +   A  + ++ASE DL+ G+GPAGV AAAV +
Sbjct:   62 TRRTESAERNLAFALSEIDRVATANGLPRSVRDSAGLVYRSAVERNLVKGRPID---VLAAASVYCSCRISGIPRTLDEIAENANIGRRELGRTYRHLSKELGLGLSPARPQDYIGRYCDALKLGTEVRERALSLIRKASENDLLSGLGPAGVTAAAVYI 218
[Close]
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A256ZBK9_9ARCH (Transcription initiation factor IIB n=1 Tax=Candidatus Bathyarchaeota archaeon ex4484_231 TaxID=2012512 RepID=A0A256ZBK9_9ARCH)

HSP 1 Score: 80.1 bits (196), Expect = 1.480e-12
Identity = 51/165 (30.91%), Postives = 86/165 (52.12%), Query Frame = 1 
Query:   85 RLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAA 579
            RL++ Q       A E  L    + + +IA+ L LP SI E A ++ R+A  + L + +     + + AA  YI CR  G++RT+ ++SKA ++S R+V ++ + L K L+     V+    + +   +L++   +   A  +   AS L L  G GP G+AAAA
Sbjct:  109 RLRKWQRRIRVSDAMERNLAFALSEITKIANNLSLPKSIFETASVIYRKAVKERLIRGRSI---QGISAASVYIACRQCGLARTLEEISKASNVSKREVGRSYRFLVKELDYFIPPVKANQYVSKFSNQLTMQGKVEEIANKILTTASNLKLTSGRGPTGIAAAA 270
[Close]
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A842XII8_9EURY (Transcription initiation factor IIB n=1 Tax=Methanophagales archaeon TaxID=2056316 RepID=A0A842XII8_9EURY)

HSP 1 Score: 79.0 bits (193), Expect = 2.890e-12
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 1 
Query:   91 QRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 588
            +RL+G+ + ++ SE  L      +  +A  L LP+ I+E A LL R+A    L K +     + + +AV YITCR +GV RT++++++   + L+ + +A   LFK L +          IP+ C +L +       A  + ++        G GP G AAAA+ L
Sbjct:   84 KRLRGIISMDS-SEKTLAFALGEIDRMASALKLPNDIKEAASLLYRKAVKHNLIKGRSI---EELGSAVLYITCRQYGVPRTLKEIAQVSRMPLKKIRRAYIFLFKKLEIKLAPADPARYIPRFCSELGLSDATRERAIKIMREGRGTAAAKGWGPTGTAAAAIYL 245
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BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: Q649S4_9ARCH (Transcription initiation factor IIB n=8 Tax=Archaea TaxID=2157 RepID=Q649S4_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 3.210e-12
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 1 
Query:   85 RLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 588
            R +RL+G++    +S+  L      +  +A  LGLP++I+E   +L R+A   GL K +     + + +A+ YITCR +GV RT++++++     L+ + +A   L + L +          IP+ C KL +   I   A  + Q      +  G GP G AAAA+ +
Sbjct:   89 RTRRLRGISI--DSSDKTLAFALVEIDRMACALGLPNNIKEATSVLYRKAMKRGLIKGRSI---EELVSAMLYITCRQYGVPRTLKEMAEVSRSPLKKIRRAYIFLLRRLEIKLAPADPARYIPRFCSKLGLSAEIREKAMVILQDDDGTGMAKGWGPIGTAAAAIYI 251
[Close]
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Match: A0A520K523_9EURY (Transcription initiation factor IIB (Fragment) n=1 Tax=Methanophagales archaeon ANME-1-THS TaxID=2491082 RepID=A0A520K523_9EURY)

HSP 1 Score: 75.9 bits (185), Expect = 8.220e-12
Identity = 43/168 (25.60%), Postives = 86/168 (51.19%), Query Frame = 1 
Query:   85 RLQRLQGMTTKETASEVALRACFARVREIAHGLGLPSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTMRDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPFICIAAQHVAQQASELDLVGGMGPAGVAAAAVLL 588
            +L++ Q  T     +E +     + +  +A  L LP +I+E A +L R+A    L + +     + +  A+ YITCR +GV RT+ ++     +  +++++A + L + L+L          +P+ C  L++   +   A  + + A++ +L  G GP G+AAAA+ +
Sbjct:   10 KLKKWQQRTHIANTTERSFIFALSEIDRMACALKLPMNIREAASMLYRKAMKKRLIRGRSI---EGIATAILYITCRQYGVPRTLEEVRDISRVGQKEISRAYRFLLRELDLKVSPASPVDFVPRFCSLLNLTSDVRAKAIEIIKHAADNELTNGRGPIGIAAAAIYI 174
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8614.16764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4T7_9PHAE8.910e-8654.21TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A520K3T5_9EURY1.460e-1431.36Transcription initiation factor IIB n=1 Tax=Methan... [more]
A0A2V3JLQ8_9EURY4.260e-1327.98Transcription initiation factor IIB n=2 Tax=Methan... [more]
A0A662RQX3_9EURY8.110e-1327.87Transcription initiation factor IIB n=1 Tax=Methan... [more]
A0A843DR40_9ARCH1.060e-1230.32Uncharacterized protein n=1 Tax=Candidatus Methano... [more]
A0A843ECA6_9ARCH1.220e-1230.00Uncharacterized protein n=1 Tax=Candidatus Methano... [more]
A0A256ZBK9_9ARCH1.480e-1230.91Transcription initiation factor IIB n=1 Tax=Candid... [more]
A0A842XII8_9EURY2.890e-1230.12Transcription initiation factor IIB n=1 Tax=Methan... [more]
Q649S4_9ARCH3.210e-1229.17Transcription initiation factor IIB n=8 Tax=Archae... [more]
A0A520K523_9EURY8.220e-1225.60Transcription initiation factor IIB (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8614contigS-dermatodea_contig8614:4801..7688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue2.8e-53
Seed eggNOG ortholog2880.D7FNK1
Preferred nameTFIIB
KEGG koko:K03124
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
GOsGO:0000003,GO:0000769,GO:0000976,GO:0000977,GO:0000979,GO:0000988,GO:0000990,GO:0000991,GO:0000993,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001098,GO:0001099,GO:0001139,GO:0001173,GO:0001174,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006935,GO:0006949,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009791,GO:0009856,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009960,GO:0009987,GO:0010035,GO:0010038,GO:0010154,GO:0010183,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010769,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0040008,GO:0040011,GO:0042221,GO:0042330,GO:0043167,GO:0043169,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043565,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0044706,GO:0044877,GO:0045595,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0048316,GO:0048518,GO:0048522,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048856,GO:0048868,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050918,GO:0051123,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051510,GO:0051704,GO:0060255,GO:0060260,GO:0060261,GO:0060284,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0080092,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990114,GO:1990837,GO:2000112,GO:2000142,GO:2000144,GO:2000241,GO:2001141
EggNOG free text desc.DNA-templated transcriptional preinitiation complex assembly
EggNOG OGsCOG1405@1,KOG1597@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTranscription factor TFIIB
Ec32 orthologEc-01_005140.1
Exons3
Model size2330
Cds size846
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8614.16764.1prot_S-dermatodea_contig8614.16764.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8614 6246..7649 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.04897-UTR-S-dermatodea_contig8614:4800..62451622925355.04897-UTR-S-dermatodea_contig8614:4800..6245Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8614 4801..6245 -
1694079877.2709415-UTR-S-dermatodea_contig8614:4800..62451694079877.2709415-UTR-S-dermatodea_contig8614:4800..6245Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8614 4801..6245 -
1622925355.0957608-UTR-S-dermatodea_contig8614:7649..76881622925355.0957608-UTR-S-dermatodea_contig8614:7649..7688Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8614 7650..7688 -
1694079877.3107955-UTR-S-dermatodea_contig8614:7649..76881694079877.3107955-UTR-S-dermatodea_contig8614:7649..7688Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8614 7650..7688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.0612748-CDS-S-dermatodea_contig8614:6245..67341622925355.0612748-CDS-S-dermatodea_contig8614:6245..6734Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8614 6246..6734 -
1694079877.2815137-CDS-S-dermatodea_contig8614:6245..67341694079877.2815137-CDS-S-dermatodea_contig8614:6245..6734Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8614 6246..6734 -
1622925355.0734136-CDS-S-dermatodea_contig8614:7041..72331622925355.0734136-CDS-S-dermatodea_contig8614:7041..7233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8614 7042..7233 -
1694079877.2900674-CDS-S-dermatodea_contig8614:7041..72331694079877.2900674-CDS-S-dermatodea_contig8614:7041..7233Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8614 7042..7233 -
1622925355.084468-CDS-S-dermatodea_contig8614:7484..76491622925355.084468-CDS-S-dermatodea_contig8614:7484..7649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8614 7485..7649 -
1694079877.3005464-CDS-S-dermatodea_contig8614:7484..76491694079877.3005464-CDS-S-dermatodea_contig8614:7484..7649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8614 7485..7649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8614.16764.1

>prot_S-dermatodea_contig8614.16764.1 ID=prot_S-dermatodea_contig8614.16764.1|Name=mRNA_S-dermatodea_contig8614.16764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=282bp
MNTVIEGGKNNKQTTRLQRLQGMTTKETASEVALRACFARVREIAHGLGL
PSSIQEDACLLLRRAEDDGLFKTKKDPRGKAMCAAVTYITCRTWGVSRTM
RDLSKAVDLSLRDVNKACKHLFKNLNLDKGTVRGTHLIPQLCGKLSVPPF
ICIAAQHVAQQASELDLVGGMGPAGVAAAAVLLICSCWKPEACRDGGRRG
GARGKGRKTLPEEEQEELGADGEKLAVGPAAVSVAQEVSMEAMKKPFRAM
YDERRRLVTPEFMDKYVPKGVTLETLQPVLG*
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mRNA from alignment at S-dermatodea_contig8614:4801..7688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8614.16764.1 ID=mRNA_S-dermatodea_contig8614.16764.1|Name=mRNA_S-dermatodea_contig8614.16764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2888bp|location=Sequence derived from alignment at S-dermatodea_contig8614:4801..7688- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGGACGTTGCTAGCCCTCTCCTTTCCGCGTCATCCAGCATGAACACGGT
GATCGAGGGGGGGAAAAACAATAAACAGACCACAAGGCTGCAGAGGTTGC
AAGGCATGACAACAAAGGAGACCGCTTCGGAGGTAGCCCTGAGGGCGTGC
TTCGCTCGGGTGCGCGAGATCGCCCACGGCTTGGGCCTGCCGTCGTCTAT
ACAGGTGCGCTTTGCCGACGCCGTGGTCCGCCGCCCTTGTTTTTGGTGCT
CCTGAGTTGCTGCTTGGCAGTGCACCTTCAGCACTCTTACTGCTAGCTGA
CCGTTTCACGCGCCACTGAGGGCTTTGTTCCCCTCCCGACCCATCGCCTA
TCGTGTTCCGTCGCTCACCGTGATCCGTACCCTAACTGTATGCAATCTGC
CTGTTCCGTTCCAAACTGGTGATGGTGATTTACAATGCACAATGCACACC
GGCAGGAGGATGCGTGCTTGCTGCTGAGGAGAGCAGAGGACGACGGGCTG
TTCAAAACGAAAAAGGACCCACGCGGAAAGGCGATGTGCGCGGCGGTGAC
GTACATCACTTGTCGGACGTGGGGGGTGTCCCGCACGATGAGAGACCTGT
CGAAGGCGGTCGACTTGTCGCTGAGAGATGTGAACAAGGCTTGCAAGGTG
CGGGTTGCCGTTCCTGCATGTACCGTGGGCCTGATTATGTCCGTCATTTT
TCCGTAGTCGGCGGGGGCCCCGCCTGTGGCGGCAGTAAGCCTCATTTGTT
ATCGTACGCCCAATCCGTCTGTGTGCATACAGTACACGTGCGCGCTTACA
TTCACCTCTCGTGGGTGACACCATTGTGTGCGGCTCGGAGTCATGCGTTT
CTAAATTACGGCGATTTGACCAAGATCTGAAACCGAAGATGTTGACTCTT
TTTTGCCCTCCGCCGACCCGTTCGTTCCCCACCCTTGTGTGTGTGTGTGT
GCAGCACCTGTTCAAGAATTTGAACCTCGACAAGGGAACGGTTCGTGGAA
CGCATCTGATTCCCCAACTGTGCGGCAAGCTCAGCGTCCCCCCGTTCATC
TGCATCGCCGCGCAGCACGTTGCACAACAGGCGAGCGAATTGGACCTGGT
GGGTGGGATGGGACCCGCCGGAGTGGCGGCGGCTGCGGTTCTCTTGATCT
GCTCGTGCTGGAAGCCCGAAGCGTGTCGCGACGGAGGCCGCCGGGGCGGT
GCGAGGGGCAAGGGGAGGAAAACTCTGCCGGAGGAGGAGCAGGAGGAGTT
AGGCGCTGATGGGGAAAAGTTGGCGGTGGGACCAGCAGCGGTGTCGGTGG
CGCAGGAGGTATCAATGGAAGCAATGAAGAAGCCATTCCGAGCGATGTAC
GATGAGCGGAGGCGTTTGGTCACGCCAGAGTTCATGGACAAGTACGTGCC
CAAGGGCGTGACGCTGGAGACGCTGCAGCCGGTCTTGGGATGATGCTTGA
TTGATTTTGCTCGTTTCTCGTGAGATTTGCGCTGCGGTGTGTTTCCTTGC
TAAGCATCCCCATAGCCCGTCTGCGTCTGCGTGGCGATACGTGATGGGCC
TGGTTGTCGTCGCCTCGCGTAGAAAACGTTACCGATAGAGGGTTAGGATG
AGTTTTCCGTACACCCGCGGCTCAATAAGAGGGACTTCGTTTTCGAGCCC
TCTTTGAACCCCGCCAAGCTCTTCGACACGAAAGCCTGCCAAGTTTGCGC
CCTAGAGGTGACACTGGTTACGGCAGGCTTTCTTGTTTGGGAACGGGGAG
GGGCTTGTGCGTTGGCCTGACGATGACGTTTCTGCTATCATTCAAGATAT
GACGGATGAGGAGGGTGAATTAGTCGGGGGAATTGGGACTGCTGCATGTA
GCTCGTCCGCGTTGAAAAACTGCGGCGGCGGTGTGTCCTTCTTCCTTGCC
GTGGCCCTCTGCATTTATCATAGGGTCACTGTTATCCCCGCAGGTAGCTC
GTAACCGCACCTAGTTGGACCTTTGATGCGTTCATCGCTAGGGGAGAGGG
AGAGAGAGAGCACCAGCGGGTCGAAAAAATGGGCAGAATAGGCGACTGTT
GTATGCATGTAGGTGGTGTGGCGCGTTGTGTATAAAAAATAACATGGTTT
GTTACGCTCGACGGTAGCTCGATTTACCGTTGTAATTGCGAGCAAACCTC
CACCCGCCCCCCTCCTAAAATAAAAAGAAATTCCCAGGTGCATTACGCTC
TCTCCCAAAGGGGACCTTGATCTTGATACCGCTCGTGAAGAATGAGCGCT
TCGAAAGATTTCGAGAGAGGCGGTGGGGGTTTTTAAGGAGTGTTTGGCGG
GATGGCGGGGAGGGGCTTTGTCGACAGCCCCGCCCGCCGCCTTTGGAATA
TGCCCCTTGGGGTGATTTTGTCGTTTTGTCTTGTGGTCACAAGTAGTTTT
TGTCCCTCTTTACAGGATTTGCGGCGTTCCTCTCTTTTGGTGTTGCTCGC
TCGATATTTGCTCGATATTTGTAGGGTGGGGAGAGGTAGGGGAAGGATCG
GATACTATTAATACATAGAAATGTTATATTATCATTCCCGGCGGTTGTTT
CGCCGTGAGTTGGCTGATGAGGTTTGTGGACCTACGGACAAAACCCCGGA
GACGGCAAGTTGGCTGGCTGTGTTCGGCCTCTGACGAGACGAGTGTGGAG
CTAGCTCGCCAGAAATAATGAAAAGTGTTGATGGCGCATGGTCTGGGGAG
AGGGTCAGGAGGTATGATACACGAGCGAAGTACAAACATAGCGTACAGAG
GTCCGTTACGTTCGGCCCGGTCTTTGCCTTCTTGATGTGAGGGGAGCGGA
AAACAAGATAGATATGGTGTCTCATGTGTACTTTCAAGGAGGTTGTATGT
ACTATAGTATAGTTCCGCCCGGCACTTGCACTCAGCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8614:4801..7688-

>mRNA_S-dermatodea_contig8614.16764.1 ID=mRNA_S-dermatodea_contig8614.16764.1|Name=mRNA_S-dermatodea_contig8614.16764.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at S-dermatodea_contig8614:4801..7688- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAACACGGTGATCGAGGGGGGGAAAAACAATAAACAGACCACAAGGCT
GCAGAGGTTGCAAGGCATGACAACAAAGGAGACCGCTTCGGAGGTAGCCC
TGAGGGCGTGCTTCGCTCGGGTGCGCGAGATCGCCCACGGCTTGGGCCTG
CCGTCGTCTATACAGATGAACACGGTGATCGAGGGGGGGAAAAACAATAA
ACAGACCACAAGGCTGCAGAGGTTGCAAGGCATGACAACAAAGGAGACCG
CTTCGGAGGTAGCCCTGAGGGCGTGCTTCGCTCGGGTGCGCGAGATCGCC
CACGGCTTGGGCCTGCCGTCGTCTATACAGGAGGATGCGTGCTTGCTGCT
GAGGAGAGCAGAGGACGACGGGCTGTTCAAAACGAAAAAGGACCCACGCG
GAAAGGCGATGTGCGCGGCGGTGACGTACATCACTTGTCGGACGTGGGGG
GTGTCCCGCACGATGAGAGACCTGTCGAAGGCGGTCGACTTGTCGCTGAG
AGATGTGAACAAGGCTTGCAAGGAGGATGCGTGCTTGCTGCTGAGGAGAG
CAGAGGACGACGGGCTGTTCAAAACGAAAAAGGACCCACGCGGAAAGGCG
ATGTGCGCGGCGGTGACGTACATCACTTGTCGGACGTGGGGGGTGTCCCG
CACGATGAGAGACCTGTCGAAGGCGGTCGACTTGTCGCTGAGAGATGTGA
ACAAGGCTTGCAAGCACCTGTTCAAGAATTTGAACCTCGACAAGGGAACG
GTTCGTGGAACGCATCTGATTCCCCAACTGTGCGGCAAGCTCAGCGTCCC
CCCGTTCATCTGCATCGCCGCGCAGCACGTTGCACAACAGGCGAGCGAAT
TGGACCTGGTGGGTGGGATGGGACCCGCCGGAGTGGCGGCGGCTGCGGTT
CTCTTGATCTGCTCGTGCTGGAAGCCCGAAGCGTGTCGCGACGGAGGCCG
CCGGGGCGGTGCGAGGGGCAAGGGGAGGAAAACTCTGCCGGAGGAGGAGC
AGGAGGAGTTAGGCGCTGATGGGGAAAAGTTGGCGGTGGGACCAGCAGCG
GTGTCGGTGGCGCAGGAGGTATCAATGGAAGCAATGAAGAAGCCATTCCG
AGCGATGTACGATGAGCGGAGGCGTTTGGTCACGCCAGAGTTCATGGACA
AGTACGTGCCCAAGGGCGTGACGCTGGAGACGCTGCAGCCGGTCTTGGGA
TGACACCTGTTCAAGAATTTGAACCTCGACAAGGGAACGGTTCGTGGAAC
GCATCTGATTCCCCAACTGTGCGGCAAGCTCAGCGTCCCCCCGTTCATCT
GCATCGCCGCGCAGCACGTTGCACAACAGGCGAGCGAATTGGACCTGGTG
GGTGGGATGGGACCCGCCGGAGTGGCGGCGGCTGCGGTTCTCTTGATCTG
CTCGTGCTGGAAGCCCGAAGCGTGTCGCGACGGAGGCCGCCGGGGCGGTG
CGAGGGGCAAGGGGAGGAAAACTCTGCCGGAGGAGGAGCAGGAGGAGTTA
GGCGCTGATGGGGAAAAGTTGGCGGTGGGACCAGCAGCGGTGTCGGTGGC
GCAGGAGGTATCAATGGAAGCAATGAAGAAGCCATTCCGAGCGATGTACG
ATGAGCGGAGGCGTTTGGTCACGCCAGAGTTCATGGACAAGTACGTGCCC
AAGGGCGTGACGCTGGAGACGCTGCAGCCGGTCTTGGGATGA
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