mRNA_S-dermatodea_contig8614.16763.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8614.16763.1
Unique NamemRNA_S-dermatodea_contig8614.16763.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8614.16763.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 9.330e-15
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   10 TPALDEPFTVSAAVGALSACNETAEADRIYADAIRRRILPDPAEGRGWKAA 162
            T AL+EP+ VSAA+GALSAC ET+EADRIYADAIRRRILPDPA G+ W AA
Sbjct:  872 TLALEEPYMVSAAIGALSACGETSEADRIYADAIRRRILPDPAAGQTWAAA 922
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8614.16763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK0_ECTSI9.330e-1578.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8614contigS-dermatodea_contig8614:68..492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue9.1e-13
Seed eggNOG ortholog2880.D7FNK0
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-01_005150.1
Exons1
Model size426
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925355.0126882-CDS-S-dermatodea_contig8614:67..4901622925355.0126882-CDS-S-dermatodea_contig8614:67..490Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8614 68..490 +
1694079877.2509153-CDS-S-dermatodea_contig8614:67..4901694079877.2509153-CDS-S-dermatodea_contig8614:67..490Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8614 68..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8614.16763.1prot_S-dermatodea_contig8614.16763.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8614 68..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8614.16763.1

>prot_S-dermatodea_contig8614.16763.1 ID=prot_S-dermatodea_contig8614.16763.1|Name=mRNA_S-dermatodea_contig8614.16763.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
HWRTPALDEPFTVSAAVGALSACNETAEADRIYADAIRRRILPDPAEGRG
WKAAALRSQSAGTAGAAGARLPVSSVTAGQGVGREATARGKAAQGGTVYR
DSGEVSERVGGGGSPAAPGHQRDKSTGRRGMDAGGSEAGGR
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mRNA from alignment at S-dermatodea_contig8614:68..492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8614.16763.1 ID=mRNA_S-dermatodea_contig8614.16763.1|Name=mRNA_S-dermatodea_contig8614.16763.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=425bp|location=Sequence derived from alignment at S-dermatodea_contig8614:68..492+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACTGGCGAACTCCCGCGCTGGACGAACCTTTCACCGTGTCGGCTGCCGT
CGGAGCCCTCTCGGCGTGCAACGAAACCGCGGAGGCCGACCGCATATACG
CCGACGCCATACGACGGAGAATCTTGCCCGATCCGGCCGAAGGCAGAGGT
TGGAAGGCCGCAGCCTTGCGCTCTCAGTCAGCCGGTACCGCCGGCGCCGC
AGGCGCGAGATTACCCGTGTCTTCTGTCACTGCTGGGCAGGGGGTCGGGC
GTGAAGCAACAGCGAGAGGAAAGGCAGCACAGGGAGGGACCGTCTACCGA
GATAGCGGCGAAGTATCAGAACGCGTTGGCGGTGGCGGTTCCCCCGCTGC
GCCCGGTCACCAGCGAGACAAAAGCACCGGTAGACGCGGCATGGACGCTG
GGGGTAGCGAGGCGGGTGGACGGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8614:68..492+

>mRNA_S-dermatodea_contig8614.16763.1 ID=mRNA_S-dermatodea_contig8614.16763.1|Name=mRNA_S-dermatodea_contig8614.16763.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig8614:68..492+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACTGGCGAACTCCCGCGCTGGACGAACCTTTCACCGTGTCGGCTGCCGT
CGGAGCCCTCTCGGCGTGCAACGAAACCGCGGAGGCCGACCGCATATACG
CCGACGCCATACGACGGAGAATCTTGCCCGATCCGGCCGAAGGCAGAGGT
TGGAAGGCCGCAGCCTTGCGCTCTCAGTCAGCCGGTACCGCCGGCGCCGC
AGGCGCGAGATTACCCGTGTCTTCTGTCACTGCTGGGCAGGGGGTCGGGC
GTGAAGCAACAGCGAGAGGAAAGGCAGCACAGGGAGGGACCGTCTACCGA
GATAGCGGCGAAGTATCAGAACGCGTTGGCGGTGGCGGTTCCCCCGCTGC
GCCCGGTCACCAGCGAGACAAAAGCACCGGTAGACGCGGCATGGACGCTG
GGGGTAGCGAGGCGGGTGGACGGCACTGGCGAACTCCCGCGCTGGACGAA
CCTTTCACCGTGTCGGCTGCCGTCGGAGCCCTCTCGGCGTGCAACGAAAC
CGCGGAGGCCGACCGCATATACGCCGACGCCATACGACGGAGAATCTTGC
CCGATCCGGCCGAAGGCAGAGGTTGGAAGGCCGCAGCCTTGCGCTCTCAG
TCAGCCGGTACCGCCGGCGCCGCAGGCGCGAGATTACCCGTGTCTTCTGT
CACTGCTGGGCAGGGGGTCGGGCGTGAAGCAACAGCGAGAGGAAAGGCAG
CACAGGGAGGGACCGTCTACCGAGATAGCGGCGAAGTATCAGAACGCGTT
GGCGGTGGCGGTTCCCCCGCTGCGCCCGGTCACCAGCGAGACAAAAGCAC
CGGTAGACGCGGCATGGACGCTGGGGGTAGCGAGGCGGGTGGACGG
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