mRNA_S-dermatodea_contig8610.16761.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8610.16761.1
Unique NamemRNA_S-dermatodea_contig8610.16761.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: A0A8J2SY22_9STRA (Hypothetical protein n=5 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SY22_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-11
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    4 PSWIADGICDKKNNNPSCAYDGGYCCECTCVSTVYFECG 120
            P+WI DG+CD  NNN +C+YDGG CCE TCVS+  + CG
Sbjct:  930 PNWIGDGMCDSSNNNAACSYDGGDCCEATCVSSTSYTCG 968          
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: A0A2E1MIS1_9BACT (Dockerin domain-containing protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E1MIS1_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 1.170e-11
Identity = 28/45 (62.22%), Postives = 31/45 (68.89%), Query Frame = 1
Query:    1 IPSWIADGICDKKNNNPSCAYDGGYCCECTCVSTVYFECGESEYS 135
            + SWIADG CD  NNNP C YDGG CCE TCV  VY  CG++  S
Sbjct: 1073 VISWIADGYCDLSNNNPDCGYDGGDCCESTCVDDVY-TCGDNNQS 1116          
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.590e-11
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    7 SWIADGICDKKNNNPSCAYDGGYCCECTCVSTVYFECGESEYS 135
            SW+ DG CD  NN PSC YDGG CCEC+CV    +ECG + +S
Sbjct:  154 SWMNDGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECGSNGFS 196          
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: D7G300_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G300_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.240e-10
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   13 IADGICDKKNNNPSCAYDGGYCCECTCVSTVYFECGESEY 132
            I +G CD +NN+PSC +DGG CC CTC  TV + C ++E+
Sbjct:   36 IGNGRCDAENNSPSCGFDGGDCCSCTCTDTVLYSCADNEF 75          
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.940e-9
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1
Query:   13 IADGICDKKNNNPSCAYDGGYCCECTCVSTV 105
            + DGICD++NNN  C YDGG CCECTCV +V
Sbjct:   16 VGDGICDEENNNELCGYDGGDCCECTCVPSV 46          
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1
Query:    7 SWIADGICDKKNNNPSCAYDGGYCCECTCVST--VYFECGESEYS 135
            SW  D  CD+ NNNPSC YDGG CCEC+C S+    + CGE+ ++
Sbjct:   63 SWKGDSWCDEINNNPSCDYDGGDCCECSCASSSSAEYSCGENGFN 107          
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.600e-8
Identity = 22/43 (51.16%), Postives = 27/43 (62.79%), Query Frame = 1
Query:    7 SWIADGICDKKNNNPSCAYDGGYCCECTCVSTVYFECGESEYS 135
            S + DG CD+  N   C YDGG CCECTCV+   +ECG   Y+
Sbjct:   45 SAVGDGNCDRDINFAECGYDGGDCCECTCVAEGEYECGAGGYA 87          
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: F0YE66_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE66_AURAN)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    4 PSWIADGICDKKNNNPSCAYDGGYCCECTCVSTVYFECGESEY 132
            PS+++DG CD  NN   C YDGG CCE TCVST  ++CG + Y
Sbjct:  514 PSYVSDGYCDPSNNVDPC-YDGGDCCESTCVSTSSYDCGVNGY 555          
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: A0A6S8W6X9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8W6X9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    4 PSWIADGICDKKNNNPSCAYDGGYCCECTCVSTVYFECGESEYS 135
            PS+  +G C   NN  SC YDGG CCE TC+ST  ++CG + YS
Sbjct:  274 PSYQGNGYCTPSNNVASCEYDGGDCCESTCISTDVYDCGVNGYS 317          
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Match: A0A6S8W449_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8W449_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    4 PSWIADGICDKKNNNPSCAYDGGYCCECTCVSTVYFECGESEYS 135
            PS+  +G C   NN  SC YDGG CCE TC+ST  ++CG + YS
Sbjct:   41 PSYQGNGYCTPSNNVASCEYDGGDCCESTCISTDVYDCGVNGYS 84          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8610.16761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2SY22_9STRA1.170e-1161.54Hypothetical protein n=5 Tax=Pelagomonas calceolat... [more]
A0A2E1MIS1_9BACT1.170e-1162.22Dockerin domain-containing protein n=1 Tax=Candida... [more]
D7G5Y7_ECTSI5.590e-1158.14Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G300_ECTSI3.240e-1052.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI82_ECTSI2.940e-967.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Z1_9PHAE3.260e-953.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L262_9PHAE2.600e-851.16LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
F0YE66_AURAN2.910e-855.81Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6S8W6X9_9STRA2.910e-852.27Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A6S8W449_9STRA2.910e-852.27Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8610contigS-dermatodea_contig8610:7993..8127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue9.7e-09
Seed eggNOG ortholog2880.D7G5Y7
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925354.9241164-CDS-S-dermatodea_contig8610:7992..81271622925354.9241164-CDS-S-dermatodea_contig8610:7992..8127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8610 7993..8127 -
1694079877.2186775-CDS-S-dermatodea_contig8610:7992..81271694079877.2186775-CDS-S-dermatodea_contig8610:7992..8127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8610 7993..8127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8610.16761.1prot_S-dermatodea_contig8610.16761.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8610 7993..8127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8610.16761.1

>prot_S-dermatodea_contig8610.16761.1 ID=prot_S-dermatodea_contig8610.16761.1|Name=mRNA_S-dermatodea_contig8610.16761.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
IPSWIADGICDKKNNNPSCAYDGGYCCECTCVSTVYFECGESEYS
back to top

mRNA from alignment at S-dermatodea_contig8610:7993..8127-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8610.16761.1 ID=mRNA_S-dermatodea_contig8610.16761.1|Name=mRNA_S-dermatodea_contig8610.16761.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig8610:7993..8127- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCCCCAGTTGGATAGCTGATGGAATTTGCGATAAGAAGAACAACAACCC GTCGTGTGCTTACGACGGGGGGTACTGCTGCGAGTGCACTTGCGTCAGCA CCGTTTATTTCGAGTGCGGCGAGTCTGAATACAGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8610:7993..8127-

>mRNA_S-dermatodea_contig8610.16761.1 ID=mRNA_S-dermatodea_contig8610.16761.1|Name=mRNA_S-dermatodea_contig8610.16761.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig8610:7993..8127- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCCCCAGTTGGATAGCTGATGGAATTTGCGATAAGAAGAACAACAACCC
GTCGTGTGCTTACGACGGGGGGTACTGCTGCGAGTGCACTTGCGTCAGCA
CCGTTTATTTCGAGTGCGGCGAGTCTGAATACAGCATCCCCAGTTGGATA
GCTGATGGAATTTGCGATAAGAAGAACAACAACCCGTCGTGTGCTTACGA
CGGGGGGTACTGCTGCGAGTGCACTTGCGTCAGCACCGTTTATTTCGAGT
GCGGCGAGTCTGAATACAGC
back to top