mRNA_S-dermatodea_contig86076.16760.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig86076.16760.1
Unique NamemRNA_S-dermatodea_contig86076.16760.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig86076.16760.1 vs. uniprot
Match: A0A6H5L5K3_9PHAE (TLC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5K3_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.150e-31
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    7 GHHAATLSVLLDPLLQPQHAFYTACALLVEFNTFLLILRRRVVWGRYLEIPFALSWVALRLVW 195
            GHH ATLSVL+DPLLQPQHAFYTACALLVEFNTFLLILRRRV WG  LE+PFALSWVALRL+W
Sbjct:  128 GHHVATLSVLVDPLLQPQHAFYTACALLVEFNTFLLILRRRVSWGGLLEVPFALSWVALRLIW 190          
BLAST of mRNA_S-dermatodea_contig86076.16760.1 vs. uniprot
Match: A0A835Z8V7_9STRA (TLC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.110e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    7 GHHAATLSVLLDPLLQPQHAFYTACALLVEFNTFLLILRRRVVWGR--YLEIPFALSWVALRLVW 195
            GHHAATL+VL+DP + PQHA YT  ALLVE NTFLLI RRR  WG    +E PF  SWVALRL+W
Sbjct:  125 GHHAATLAVLIDPYMHPQHALYTCWALLVEANTFLLIARRRFRWGASALVEAPFVASWVALRLIW 189          
BLAST of mRNA_S-dermatodea_contig86076.16760.1 vs. uniprot
Match: A0A7S4PA72_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PA72_GUITH)

HSP 1 Score: 83.6 bits (205), Expect = 8.130e-18
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    7 GHHAATLSVLLDPLLQPQHAFYTACALLVEFNTFLLILRRRVVWGRYLEIPFALSWVALRLVW 195
             HH ATL VLLDPLLQP+H  YT+  LLVE NT LL+LRRRV +   +E+PF L+WV LR +W
Sbjct:  131 SHHIATLLVLLDPLLQPKHRVYTSACLLVEINTLLLLLRRRVSYSAIVEVPFILTWVLLRNIW 193          
BLAST of mRNA_S-dermatodea_contig86076.16760.1 vs. uniprot
Match: A0A7S0VYL2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYL2_9CRYP)

HSP 1 Score: 81.6 bits (200), Expect = 3.690e-17
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    7 GHHAATLSVLLDPLLQPQHAFYTACALLVEFNTFLLILRRRVVWGRYLEIPFALSWVALRLVW 195
             HHAATL VLLDPLL P H+ YT+  LLVE NT LL+LRR++ +   +E+PF +SWV LR VW
Sbjct:  114 AHHAATLLVLLDPLLSPSHSVYTSACLLVEINTLLLLLRRKMSYSVLVEVPFIISWVLLRNVW 176          
BLAST of mRNA_S-dermatodea_contig86076.16760.1 vs. uniprot
Match: A0A7S2V1S4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.220e-12
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   10 HHAATLSVLLDPLLQP-----QHAFYTACALLVEFNTFLLILRRRVVWGRYLEIPFALSWVALRLVW 195
            HH +TL++LL P+           +YTA A++VE NT LL +RR+  +G ++EIPFALSWV +RLVW
Sbjct:  110 HHISTLAILLGPIFNAISGSGLQGYYTAAAIIVEANTVLLTMRRKFKFGLWVEIPFALSWVLIRLVW 176          
BLAST of mRNA_S-dermatodea_contig86076.16760.1 vs. uniprot
Match: A0A7S2B6S7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6S7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.990e-11
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   10 HHAATLSVLLDPLLQPQHAFYTACALLVEFNTFLLILRRRVVWGRYLEIPFALSWVALRLVW 195
            HH  TL+VL DP+    H  Y +CALLVE NT L+ LRRR+    + E+ F  +W+ALRL+W
Sbjct:   75 HHLGTLAVLYDPITVLNHQKYASCALLVEVNTVLITLRRRLGRPMWCEVSFLATWLALRLIW 136          
BLAST of mRNA_S-dermatodea_contig86076.16760.1 vs. uniprot
Match: A0A2V0NST7_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NST7_9CHLO)

HSP 1 Score: 48.5 bits (114), Expect = 5.540e-5
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 1
Query:    7 GHHAATLSVLLDPLLQPQHAFYTACALLVEFNTFLLILRRRVVWGRYLEIPFALSWVALR 186
             HH  T   +L P   PQ+ +  A  + VE NT+LLI  RRV+ GR +E+ F  +W+ LR
Sbjct:   76 SHHLVTAVYMLIPYHYPQYQWCMAACMTVELNTWLLI-ARRVIGGRLIELSFYATWIVLR 134          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86076.16760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L5K3_9PHAE1.150e-3188.89TLC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z8V7_9STRA1.110e-1967.69TLC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4PA72_GUITH8.130e-1861.90Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A7S0VYL2_9CRYP3.690e-1760.32Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S2V1S4_9STRA5.220e-1249.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2B6S7_9STRA1.990e-1150.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2V0NST7_9CHLO5.540e-541.67Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig86076contigS-dermatodea_contig86076:109..306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.4e-24
Seed eggNOG ortholog2880.D8LSQ8
EggNOG OGs2E7M6@1,2SE6N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925354.8866901-CDS-S-dermatodea_contig86076:108..3061622925354.8866901-CDS-S-dermatodea_contig86076:108..306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86076 109..306 -
1694079877.2064342-CDS-S-dermatodea_contig86076:108..3061694079877.2064342-CDS-S-dermatodea_contig86076:108..306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig86076 109..306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig86076.16760.1prot_S-dermatodea_contig86076.16760.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig86076 109..306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig86076.16760.1

>prot_S-dermatodea_contig86076.16760.1 ID=prot_S-dermatodea_contig86076.16760.1|Name=mRNA_S-dermatodea_contig86076.16760.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
MKGHHAATLSVLLDPLLQPQHAFYTACALLVEFNTFLLILRRRVVWGRYL
EIPFALSWVALRLVW*
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mRNA from alignment at S-dermatodea_contig86076:109..306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig86076.16760.1 ID=mRNA_S-dermatodea_contig86076.16760.1|Name=mRNA_S-dermatodea_contig86076.16760.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at S-dermatodea_contig86076:109..306- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGGGTCACCACGCTGCGACGCTGTCGGTGCTTTTAGATCCCCTCCT CCAGCCACAGCACGCTTTCTACACGGCGTGCGCTCTCCTGGTAGAGTTCA ACACGTTCCTCCTCATTCTTCGGCGTAGGGTGGTTTGGGGGCGGTACCTG GAGATTCCCTTCGCGTTGTCCTGGGTGGCGCTGCGGTTAGTCTGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig86076:109..306-

>mRNA_S-dermatodea_contig86076.16760.1 ID=mRNA_S-dermatodea_contig86076.16760.1|Name=mRNA_S-dermatodea_contig86076.16760.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at S-dermatodea_contig86076:109..306- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGGGTCACCACGCTGCGACGCTGTCGGTGCTTTTAGATCCCCTCCT
CCAGCCACAGCACGCTTTCTACACGGCGTGCGCTCTCCTGGTAGAGTTCA
ACACGTTCCTCCTCATTCTTCGGCGTAGGGTGGTTTGGGGGCGGTACCTG
GAGATTCCCTTCGCGTTGTCCTGGGTGGCGCTGCGGTTAGTCTGGTGAAT
GAAGGGTCACCACGCTGCGACGCTGTCGGTGCTTTTAGATCCCCTCCTCC
AGCCACAGCACGCTTTCTACACGGCGTGCGCTCTCCTGGTAGAGTTCAAC
ACGTTCCTCCTCATTCTTCGGCGTAGGGTGGTTTGGGGGCGGTACCTGGA
GATTCCCTTCGCGTTGTCCTGGGTGGCGCTGCGGTTAGTCTGGTGA
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