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Homology
BLAST of mRNA_S-dermatodea_contig8606.16759.1 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI) HSP 1 Score: 140 bits (353), Expect = 1.110e-35 Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 1
Query: 178 KKVPTTAPGKCIVCLEDCEEVLGADWLHQQWPSMGQTDEGKAAACTVSSCVSCLKTYFEGIVEAGFEGACPRMRCMCCPRVVCQQAWAPLADSSV 462
KKVP T PG C+VCLEDC+ VL + WLH+ S +D G CTV++CVSCLKTYF GIVEAGF+GACPRMRCMCCPRVVC+ WAPL +++V
Sbjct: 51 KKVPGTRPGACMVCLEDCDNVLDSAWLHRLAASSSASDVG-GTDCTVTACVSCLKTYFTGIVEAGFDGACPRMRCMCCPRVVCEWVWAPLVEATV 144
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 139.0 |
| Seed ortholog evalue | 1.8e-30 |
| Seed eggNOG ortholog | 2880.D7G6K5 |
| EggNOG OGs | 2EGD3@1,2SAJF@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 464 |
| Cds size | 462 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8606.16759.1 >prot_S-dermatodea_contig8606.16759.1 ID=prot_S-dermatodea_contig8606.16759.1|Name=mRNA_S-dermatodea_contig8606.16759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp
VGAELEVVPASGMEQEATLPIPQPRCRDLVDPLPPPPPATAVLEQAPSKP
PAPEEAPSSKKVPTTAPGKCIVCLEDCEEVLGADWLHQQWPSMGQTDEGK
AAACTVSSCVSCLKTYFEGIVEAGFEGACPRMRCMCCPRVVCQQAWAPLA
DSSV back to topmRNA from alignment at S-dermatodea_contig8606:2677..4836+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8606.16759.1 ID=mRNA_S-dermatodea_contig8606.16759.1|Name=mRNA_S-dermatodea_contig8606.16759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2160bp|location=Sequence derived from alignment at S-dermatodea_contig8606:2677..4836+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGGTGCCGAGCTGGAGGTAGTCCCGGCTTCGGGGATGGAGCAGGAGGT
GAGGGTCTTGACGATTGGTGGTGTGGCGAGGCTTGTCCAATGCTAGAAAC
AGCCGACTTCATGCCGGTACAAGTAGTAGTACGTGTATTGACGATAGAGT
AGTAGTTCATCAGAGAACGTGGTCTCAGATACAAAAACTCGAACGTCCAA
AACACAAAAAACAGAACAGTTGCTCGCTCAAACAATGTAGTTATGTGACT
TGTACTCTGTCTGTACGTGTACAGTATAGAGCTCTATCCGTTCTGCGTTT
AAATCAAAAGCATAAGGCGCCGCCCGCTGAGAGTGTCGCCCAAGCTCTCA
AGCGTACACGCTTCCAATATCCCGGGGCGGATATCAAAATTGGTGCAACA
GCAGAATACCTGGTATGCACATACCTGGTATATGGTGCCAAAAATTCCAC
CACAAGATATAAGCTCAAACGTCGAAGGTTTCATATTTTCAGAGCGAGGC
AAGCACAAGTCAAAACCATTAACCATTGTCCCAAACCCTTGTGCTCTTTT
CATGAATGACCACGGTGTTTTGTCGCCGTTCTCGTCATCGCAGGCCACCT
TGCCGATACCGCAACCACGTTGCCGCGACCTTGTAGACCCACTGCCACCA
CCACCACCCGCAACTGCCGTCCTTGAGCAAGCTCCATCGAAACCCCCTGC
CCCCGAAGAAGCGCCGTCTTCAAAGAAGGTTCCGACAACCGCTCCGGGGA
AGTGCATTGTGTGCCTGGAGGACTGCGAGGAGGTTCTGGGGGCAGACTGG
CTTCACCAGCAGTGGCCATCGATGGGACAGACCGACGAGGGGAAAGCGGC
CGCGTGTACGGTTTCTTCGTGCGTGTCGTGCCTCAAGACGTACTTCGAGG
TGATGAGGTGTTACTCTGTACTCGCTCTCTGTTGACCGTTTCCGGCCGTC
ATAAGGGTCCCGCAGTACTAACAATAAAAGACATGCCGAATCTGACGAAA
AGGGTTCGGTAAACATGGCGCGTTTAATAAAGGTACAGTAAACATGGCGT
TTCTCAATAACAGGGTACACCTGGTAGTAAACATGGCGTTTTTCAATAAA
AGGGTACAGTAAACATGGCGTTTCTCGAGAAACGAGGGGTCCGCTAAATA
TGTTGGTGCTGAAGCGGGGCACAAGAGTTGCGGAGGTACACACGTATCAA
GACCAAACGTGCCTAACAGCATGCACATAGTATACCATAATCAATATTGT
CTCGCCTGACAAAAGGTGCGATCTTCAGGCCTGAAATTATTATTATTACT
ATATCATCATCATAGTCTAGTGACCTTATGCGTCTAATCTAGTAACGTGT
CACTCACATTAGTATTATTTGTATTGTTATTAGTAGTAGTAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTATCACACATGAAACCGACCGACCCACC
GGTGGTTGCCGATCCCGCTCGCTGTCGGGTGAGTAAAAAAGTGAGAGATC
GAGAAAAAACTCTACGAAAGTACACACAAAGAAGAAATGTCGAATAAAAA
ACTAAGGCAAATCTTGCAAGGTGTTCGGGCCAACGTTTAAAAAATCAAGT
ATCGAATAGGCTATTCGGCATAAATTTGGTCCTATAGCTATCAGTACTAT
TAATACTGTGTACCTCCGTTATAGCATACTGTTAAATAGATACTATATAT
ACTTTCGTCTGGGCACCTTCTCATCGAGACTATTCACGACTAGTCCGAGT
CTGCAAATTCTCGGGGGTAAAATTACTACCACGTATAGTCGGTAGCCACG
GCTACTTTGGTGAGGTGTGCGAACGGGCGAACCTACGAAGCATCCGAAAA
GGCTTCAAAACATTACTCTGTAAGCCCTATCGATTTGGTATCAAGAGCTG
TACTCTAAAGCCCTAGCGATTTGGCTTCAAGGGCGAACTCTAAATCGCTA
CTATAAAACGTGCAATGCTCAATTAGTTAATACAGTAACGATGTATATCA
AAATCAATCGATCAAGTGCTATTCTTGCGTCTGGCATCGTCGTTTCCCCA
GGGCATTGTAGAGGCGGGCTTTGAGGGCGCCTGTCCTCGCATGCGCTGCA
TGTGTTGCCCTCGGGTGGTTTGCCAGCAGGCGTGGGCACCATTGGCGGAC
TCGAGCGTGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8606:2677..4836+ >mRNA_S-dermatodea_contig8606.16759.1 ID=mRNA_S-dermatodea_contig8606.16759.1|Name=mRNA_S-dermatodea_contig8606.16759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig8606:2677..4836+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGGTGCCGAGCTGGAGGTAGTCCCGGCTTCGGGGATGGAGCAGGAGGT
CGGTGCCGAGCTGGAGGTAGTCCCGGCTTCGGGGATGGAGCAGGAGGCCA
CCTTGCCGATACCGCAACCACGTTGCCGCGACCTTGTAGACCCACTGCCA
CCACCACCACCCGCAACTGCCGTCCTTGAGCAAGCTCCATCGAAACCCCC
TGCCCCCGAAGAAGCGCCGTCTTCAAAGAAGGTTCCGACAACCGCTCCGG
GGAAGTGCATTGTGTGCCTGGAGGACTGCGAGGAGGTTCTGGGGGCAGAC
TGGCTTCACCAGCAGTGGCCATCGATGGGACAGACCGACGAGGGGAAAGC
GGCCGCGTGTACGGTTTCTTCGTGCGTGTCGTGCCTCAAGACGTACTTCG
AGGCCACCTTGCCGATACCGCAACCACGTTGCCGCGACCTTGTAGACCCA
CTGCCACCACCACCACCCGCAACTGCCGTCCTTGAGCAAGCTCCATCGAA
ACCCCCTGCCCCCGAAGAAGCGCCGTCTTCAAAGAAGGTTCCGACAACCG
CTCCGGGGAAGTGCATTGTGTGCCTGGAGGACTGCGAGGAGGTTCTGGGG
GCAGACTGGCTTCACCAGCAGTGGCCATCGATGGGACAGACCGACGAGGG
GAAAGCGGCCGCGTGTACGGTTTCTTCGTGCGTGTCGTGCCTCAAGACGT
ACTTCGAGGGCATTGTAGAGGCGGGCTTTGAGGGCGCCTGTCCTCGCATG
CGCTGCATGTGTTGCCCTCGGGTGGTTTGCCAGCAGGCGTGGGCACCATT
GGCGGACTCGAGCGTGGGCATTGTAGAGGCGGGCTTTGAGGGCGCCTGTC
CTCGCATGCGCTGCATGTGTTGCCCTCGGGTGGTTTGCCAGCAGGCGTGG
GCACCATTGGCGGACTCGAGCGTG back to top
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