mRNA_S-dermatodea_contig8605.16758.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8605.16758.1
Unique NamemRNA_S-dermatodea_contig8605.16758.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: A0A6H5KEX0_9PHAE (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 4.190e-40
Identity = 69/101 (68.32%), Postives = 82/101 (81.19%), Query Frame = 1
Query:    1 PVFEKKLFSMCTEEVLAHLDSFANKPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHPK 303
            P+FEKKLFSMCT+EV   L    ++  D VLFG+EAHVCVTQTCLD+L+LGY VHVVCDGVSSQKP+DR+VAL RMQQ GA LT+ EQV FQL  +A++ K
Sbjct:   86 PIFEKKLFSMCTKEVEEELKKLPDRK-DAVLFGIEAHVCVTQTCLDLLDLGYEVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEK 185          
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: D7FJG0_ECTSI (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG0_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.550e-39
Identity = 69/101 (68.32%), Postives = 82/101 (81.19%), Query Frame = 1
Query:    1 PVFEKKLFSMCTEEVLAHLDSFANKPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHPK 303
            P+FEKKLFSMCT+EV   L    ++  D VLFG+EAHVCVTQTCLD+L+LGY VHVVCDGVSSQKP+DR+VAL RMQQ GA LT+ EQV FQL  +A++ K
Sbjct:  148 PIFEKKLFSMCTKEVEEELKKLPDRK-DAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEK 247          
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: A0A6U1N7F4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1N7F4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.070e-35
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    4 VFEKKLFSMCTEEVLAHLDSFANKPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHPK 303
            V++KKLFSMCT++V A L++     T VVLFG+E HVC+ QTCLD+L  G  VHVV DG SSQ+PYDR VAL RM + GA +TT E  VF+L G+A HPK
Sbjct:  100 VYDKKLFSMCTDQVNAELEAAGEGLTSVVLFGIETHVCIQQTCLDLLSRGLEVHVVADGCSSQRPYDRGVALQRMARAGAFVTTAESAVFELLGTAQHPK 199          
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: A0A7S0FTH2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FTH2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.720e-33
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 PVFEKKLFSMCTEEVLAHLDSFANKP-TDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHP 300
            P+FEKKLFSM T EVL HL     K  T  +LFG+EAHVCV QTCLD+LE+G+ VHV+ DGVSSQ+P DR VAL RM   GA+LTT +   F L  SA+HP
Sbjct:  126 PIFEKKLFSMMTPEVLDHLAQPNMKDRTSFLLFGIEAHVCVQQTCLDLLEMGHDVHVIVDGVSSQQPIDREVALQRMMGAGAYLTTAQSAAFMLVKSAEHP 226          
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: A0A7S1E7D6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E7D6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.020e-33
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    7 FEKKLFSMCTEEVLAHLDSFANKPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHP 300
            FEKKLFSMC E++  HL     K +  VLFG+EAHVCV QT LD+LE G+ VH++ DGVSSQ+ YDR +AL RM Q GA LTT +   F L  SADHP
Sbjct:    1 FEKKLFSMCVEDLNEHLKGL--KRSSFVLFGIEAHVCVQQTALDLLEQGHDVHIIADGVSSQQSYDREIALQRMSQAGAWLTTAQSAAFMLMQSADHP 96          
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: A0A7S2I082_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I082_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.900e-32
Identity = 59/101 (58.42%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 PVFEKKLFSMCTEEVLAHL-DSFANKPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHP 300
            PVFEKKLFSM T +V +H  ++  NK T  +L G+EAHVCV QT LD+LE+G+ VH+V DGVSSQ+P+DR +AL RM   GA LTT +   F L  SADHP
Sbjct:  165 PVFEKKLFSMMTPQVKSHFTETLQNKTTSFILVGIEAHVCVQQTALDLLEMGHDVHIVADGVSSQQPFDREIALQRMTGAGAFLTTAQSAAFMLMQSADHP 265          
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: A0A6V1K7V1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7V1_HETAK)

HSP 1 Score: 120 bits (300), Expect = 9.490e-32
Identity = 63/100 (63.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    1 PVFEKKLFSMCTEEVLAHLDSFANKPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHP 300
            PVFEKKLFSM T+EV   LD        VVLFG E HVCV QTCLD+LE G  VHVV DG SSQ+P DR VAL RM Q GA +TT E +VF L  SA HP
Sbjct:   89 PVFEKKLFSMITDEVGTALDQCGPSLRSVVLFGQETHVCVQQTCLDLLERGLEVHVVADGCSSQRPTDREVALQRMAQSGAFVTTAESLVFMLMRSAAHP 188          
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: W7U6T6_9STRA (Isochorismatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6T6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.970e-32
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 1
Query:    1 PVFEKKLFSMCTEEVLAHLDSFANKPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHPK 303
            P FEKK+FSM T+E+ A +     + T VVLFG+EAHVCV QT LD+LE GY VH++ DGVSSQK +DR+VAL RM++ GA LTT E +VF L  +A HP+
Sbjct:  103 PTFEKKMFSMLTDELKAQMQCEPERKT-VVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQ 202          
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: A0A8K1CCB9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCB9_PYTOL)

HSP 1 Score: 119 bits (298), Expect = 2.090e-31
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    7 FEKKLFSMCTEEVLAHLDSFANKPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHP 300
            F+K LFSM T EV  H+++  ++P  V+L G+E HVCV QTCLD+LE GY VHVV D +SS   ++RS++L RM+Q GA +T+VE  +FQLAG A HP
Sbjct:  109 FDKMLFSMMTPEVTQHVEALPSQPKSVILCGIEGHVCVLQTCLDLLEKGYDVHVVSDAISSSTAFNRSISLERMRQSGAFITSVESSIFQLAGDASHP 206          
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Match: A0A6U3TC81_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TC81_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.170e-31
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 PVFEKKLFSMCTEEVLAHLDSFAN-KPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCDGVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADH 297
            PVFEKKLFSMCTEE   HL S ++ + T  ++ G+EAHVC+ QTCLD+LE G+ VH++ DGVSSQ+  DR +AL RM+Q GA +TT +   F L G AD+
Sbjct:   85 PVFEKKLFSMCTEECSKHLASLSSSEKTSYLIVGIEAHVCLQQTCLDLLEQGHDVHIIADGVSSQQKIDRDIALKRMEQSGAWITTCQSAAFMLLGGADN 184          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8605.16758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEX0_9PHAE4.190e-4068.32Isochorismatase domain-containing protein n=1 Tax=... [more]
D7FJG0_ECTSI1.550e-3968.32Isochorismatase domain-containing protein n=1 Tax=... [more]
A0A6U1N7F4_9STRA4.070e-3560.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0FTH2_9STRA3.720e-3361.39Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S1E7D6_9STRA6.020e-3359.18Hypothetical protein (Fragment) n=1 Tax=Thalassion... [more]
A0A7S2I082_9STRA1.900e-3258.42Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6V1K7V1_HETAK9.490e-3263.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7U6T6_9STRA9.970e-3258.42Isochorismatase n=1 Tax=Nannochloropsis gaditana T... [more]
A0A8K1CCB9_PYTOL2.090e-3155.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6U3TC81_9STRA2.170e-3156.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8605contigS-dermatodea_contig8605:4329..5365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog2880.D7FJG0
Preferred nameMAR1
EggNOG free text desc.isochorismatase domain-containing protein
EggNOG OGsCOG1335@1,KOG4044@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIsochorismatase-like
Ec32 orthologEc-14_006200.1
Exons3
Model size306
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8605.16758.1prot_S-dermatodea_contig8605.16758.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8605 4329..5338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925354.7689614-CDS-S-dermatodea_contig8605:4328..44401622925354.7689614-CDS-S-dermatodea_contig8605:4328..4440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8605 4329..4440 -
1694079877.1271744-CDS-S-dermatodea_contig8605:4328..44401694079877.1271744-CDS-S-dermatodea_contig8605:4328..4440Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8605 4329..4440 -
1622925354.7830565-CDS-S-dermatodea_contig8605:4660..47281622925354.7830565-CDS-S-dermatodea_contig8605:4660..4728Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8605 4661..4728 -
1694079877.1425629-CDS-S-dermatodea_contig8605:4660..47281694079877.1425629-CDS-S-dermatodea_contig8605:4660..4728Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8605 4661..4728 -
1622925354.79489-CDS-S-dermatodea_contig8605:5239..53381622925354.79489-CDS-S-dermatodea_contig8605:5239..5338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8605 5240..5338 -
1694079877.1529949-CDS-S-dermatodea_contig8605:5239..53381694079877.1529949-CDS-S-dermatodea_contig8605:5239..5338Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8605 5240..5338 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925354.8096263-UTR-S-dermatodea_contig8605:5338..53651622925354.8096263-UTR-S-dermatodea_contig8605:5338..5365Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8605 5339..5365 -
1694079877.163882-UTR-S-dermatodea_contig8605:5338..53651694079877.163882-UTR-S-dermatodea_contig8605:5338..5365Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8605 5339..5365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8605.16758.1

>prot_S-dermatodea_contig8605.16758.1 ID=prot_S-dermatodea_contig8605.16758.1|Name=mRNA_S-dermatodea_contig8605.16758.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
MCTEEVLAHLDSFANKPTDVVLFGLEAHVCVTQTCLDMLELGYGVHVVCD
GVSSQKPYDRSVALSRMQQVGAHLTTVEQVVFQLAGSADHPK*
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mRNA from alignment at S-dermatodea_contig8605:4329..5365-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8605.16758.1 ID=mRNA_S-dermatodea_contig8605.16758.1|Name=mRNA_S-dermatodea_contig8605.16758.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1037bp|location=Sequence derived from alignment at S-dermatodea_contig8605:4329..5365- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGTTTTTGAAAAGAAACTGTTCTCCATGTGCACGGAGGAAGTGCTCGC GCACCTTGATAGTTTCGCGAACAAGCCTACCGACGTCGTGCTCTTTGGGT TGGAGGCTCATGTGTGCGTCACTCAGGTGCGGGGCGTGTCGAGAAGCCCA CACTTTGGCCTTGTCACCGGTTTGGTGCTGTCGAAATAGTTGGAGGGCGT ATGCTTCAAGGCTTGAGGTTGCGCGCGACGGGTGGTATACCGCACTCCTG AAGCCCGAAGTGCTTTGAAGTCGTCCGCTTTCGTCGAACGTTTTCTCCTC CTGCCACTGGATGACGCGCGACCGTGTCAACGGTTCGCCTGTACCTCGTT GGGTAGTCTCGAGTCTTCGTGGCTCACTGTGTTTGTTCTGTGCATCGCAC GGCGCGCCTATGCGATTGCCGCGGATGGCGCAGCAATGACTGACGCACGG GGTCGAAGCGTTTCACGACAGGCAGGAAGATGTGCGTCAAGCGCACCTTC CTGCTGCAGTATGATAGCAGACATCAACGATGATACCGCTGCGTGCATCG CGAGCAGCAGCAGCGCTTTAGACACTCGTACACCGCACCCACCTTCGGCG CGCCCCGCCTTGCTTCTTCTTGACCCGCAACCGCAAGACATGCCTGGATA TGTTGGAGCTTGGCTACGGTGTCCACGTCGTCTGCGATGGCGTCTCCAGC CAAAAGTGAGACCCGGAAACCCACGGTAACCGCGCCCGGCATCGTAGTTT CGCAAGGCCGCGTGCCCCGTCCGCGATTCCACGCCTTGACGAAATGGGGC TTTTTTACCGCACCGACATTCCTTTAGACCTACTACTGTAGTTATGGTGC GATGTCAGCTTCGCGCGCTGAACAGGTGCAAATGACCTTCGATTGCGCGT CCCACTTGTCGTGTGCTGGCCGCAGACCGTACGATCGAAGTGTGGCCTTG AGCAGGATGCAACAAGTGGGGGCGCACTTGACGACGGTGGAACAGGTGGT CTTCCAACTCGCCGGTTCTGCGGACCACCCCAAGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8605:4329..5365-

>mRNA_S-dermatodea_contig8605.16758.1 ID=mRNA_S-dermatodea_contig8605.16758.1|Name=mRNA_S-dermatodea_contig8605.16758.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig8605:4329..5365- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCACGGAGGAAGTGCTCGCGCACCTTGATAGTTTCGCGAACAAGCC
TACCGACGTCGTGCTCTTTGGGTTGGAGGCTCATGTGTGCGTCACTCAGA
TGTGCACGGAGGAAGTGCTCGCGCACCTTGATAGTTTCGCGAACAAGCCT
ACCGACGTCGTGCTCTTTGGGTTGGAGGCTCATGTGTGCGTCACTCAGAC
ATGCCTGGATATGTTGGAGCTTGGCTACGGTGTCCACGTCGTCTGCGATG
GCGTCTCCAGCCAAAAACATGCCTGGATATGTTGGAGCTTGGCTACGGTG
TCCACGTCGTCTGCGATGGCGTCTCCAGCCAAAAACCGTACGATCGAAGT
GTGGCCTTGAGCAGGATGCAACAAGTGGGGGCGCACTTGACGACGGTGGA
ACAGGTGGTCTTCCAACTCGCCGGTTCTGCGGACCACCCCAAGTAAACCG
TACGATCGAAGTGTGGCCTTGAGCAGGATGCAACAAGTGGGGGCGCACTT
GACGACGGTGGAACAGGTGGTCTTCCAACTCGCCGGTTCTGCGGACCACC
CCAAGTAA
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