mRNA_S-dermatodea_contig86044.16757.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 115 bits (287), Expect = 4.590e-28 Identity = 65/141 (46.10%), Postives = 92/141 (65.25%), Query Frame = 1
Query: 7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
G +IG+QE RR+G S + +GYV+ SG +AG +G GVG+A+KEA +V + + E I+ R++KV ++ GR+ VTF++GYAPTE R+ DV+AK+ FW + G + EV L+VLMDANARTGRR D
Sbjct: 11 GCDVIGLQETRREGQGSLAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRD 150
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE) HSP 1 Score: 112 bits (281), Expect = 1.310e-27 Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQGG--VGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
G +IG+QE RR+G S + +GYV+ SG +AG +GG VG+A+KEA +V + + E I R++KV ++ GR+ VTF++GYAPTE RS DV+AK+ FW + A+ EV L+VLM ANARTGRR D
Sbjct: 42 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRSTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMGANARTGRRRD 181
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.610e-27 Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
G +IG+QE RR+G S + +GYV SG +AG G G GVG+A+KEA +V + + E I R++KV ++ GR+ VTF++GYAPTE R+ DV+AK+ FW + A+ EV L+VLMDANARTGRR D
Sbjct: 11 GCDVIGLQETRREGQGSIAHDGYVFIWSGARAGTKGKWGVHGVGIAIKEAMWQSVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD 150
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 109 bits (273), Expect = 3.630e-27 Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 1
Query: 16 IIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
+IG+QE RR G + + +GYV+ SG +AG +G GVG+A+KE +V +G + E I R++KV ++ GR+ VTF++GYAPTE R+ DV+AK+ FW + + EV L+VLMDANARTGRR D
Sbjct: 14 VIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRD 150
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 112 bits (279), Expect = 5.320e-27 Identity = 64/139 (46.04%), Postives = 90/139 (64.75%), Query Frame = 1
Query: 7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRR 402
G +IG+QE RR+G S + +GYV+ SG +AG +G GVG+A+KEA +V + + E I R++KV ++ GR+ VTF++GYAPTE R+ DV+AK+ FW + A+ EV L+VLMDANARTGRR
Sbjct: 11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 114 bits (286), Expect = 5.820e-27 Identity = 66/141 (46.81%), Postives = 89/141 (63.12%), Query Frame = 1
Query: 7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNG--GQGGVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
G +IG+QE RR+G S + +GYV+ SG +AG G+ GVG+A+KEA TV + E I R++KV ++ GR+ VTF++GYAPTE R DV+AK+ FW + A+ EV L+VLMDANARTGRR D
Sbjct: 188 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD 327
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 114 bits (285), Expect = 7.920e-27 Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 1
Query: 7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
G +IG+QE RR+G S + +GYV+ SG +AG +G GVG+A+KEA +V + + E I R++KV ++ GR+ VTF++GYAPTE R+ DV+AK+ FW + A+ EV L+VLMDANARTGRR D
Sbjct: 11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD 150
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE) HSP 1 Score: 108 bits (270), Expect = 9.510e-27 Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 1
Query: 16 IIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRR 402
+IG+QE RR+G S + +GYV+ SG +AG +G GVG A+KEA +V + + E I R++KV ++ GR+ VTF++GYAPTE R+ DV+AK+ FW + A+ EV L+VLMDANARTGRR
Sbjct: 14 VIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR 148
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5K6P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P8_9PHAE) HSP 1 Score: 112 bits (281), Expect = 1.090e-26 Identity = 64/141 (45.39%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
G ++G+QE RRDG S +GYV+ SG +AG +G GVG+A+KEA +V + + E I R++KV ++ GR+ VTF++GYAPTE R+ DV+AK+ FW + A+ EV L+VLMDANARTGR+ D
Sbjct: 58 GCDVVGLQENRRDGQGSIPHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLLVLMDANARTGRKRD 197
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Match: A0A6H5JM04_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM04_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.850e-26 Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 7 GIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQG--GVGLAVKEA---TVRQGTCSQEYIDGRVLKVSFELMGRSKAVTFIIGYAPTEVERSVK--DVHAKNEFWKVIGGAVEEVPVTQQLIVLMDANARTGRRED 408
G +IG+QE RR+G S + +GYV+ SG +AG +G GVG+A+KEA +V + + E I R++KV ++ GR+ VTF++GYAPTE R+ DV+AK+ FW A+ EV L+VLMDANARTGRR D
Sbjct: 11 GCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTAPDAAIREVHSRDHLVVLMDANARTGRRRD 150 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig86044.16757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig86044.16757.1 >prot_S-dermatodea_contig86044.16757.1 ID=prot_S-dermatodea_contig86044.16757.1|Name=mRNA_S-dermatodea_contig86044.16757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp ELGIHIIGIQEPRRDGVSSFSQEGYVVCCSGNKAGRNGGQGGVGLAVKEAback to top mRNA from alignment at S-dermatodea_contig86044:265..672- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig86044.16757.1 ID=mRNA_S-dermatodea_contig86044.16757.1|Name=mRNA_S-dermatodea_contig86044.16757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig86044:265..672- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig86044:265..672- >mRNA_S-dermatodea_contig86044.16757.1 ID=mRNA_S-dermatodea_contig86044.16757.1|Name=mRNA_S-dermatodea_contig86044.16757.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig86044:265..672- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |