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Homology
BLAST of mRNA_S-dermatodea_contig86.16754.1 vs. uniprot
Match: D7FQ74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ74_ECTSI) HSP 1 Score: 196 bits (499), Expect = 7.040e-56 Identity = 111/189 (58.73%), Postives = 121/189 (64.02%), Query Frame = 2
Query: 335 GQKNKQKTATRGTEVADRLSAELFSMLTDEGARPDDSAVMSKIEELEAAPGVTFNKDYLYDGPWRVLWKTNTEWQRYFDPLNGLADNKSYQWYKEGGSVTNIAQALGEKLYVTVDGQGAPASESTELPYEVNVEVSRAWLHAFGGKVPLDFIKGKGTTFVVYNDAKLRVFRSDTGGTVVQTKADEVVPV 901
GQK K++ + T RLS ELF LT EGA+PDD AVM KIEELE GSVTNIAQALG+KLYVTVDGQG+PAS T+LPYEVNVEVSRAWLHA GGK+PLDFIKGKGTTFVVYNDA+LR+FRSDTGG VVQTKADEVVPV
Sbjct: 65 GQKTKEQNNSGETA---RLSEELFDFLTAEGAKPDDVAVMEKIEELE------------------------------------------------DGSVTNIAQALGDKLYVTVDGQGSPASTDTDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDARLRIFRSDTGGVVVQTKADEVVPV 202
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-01_007180.1 |
| Exons | 7 |
| Model size | 1766 |
| Cds size | 807 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig86.16754.1 >prot_S-dermatodea_contig86.16754.1 ID=prot_S-dermatodea_contig86.16754.1|Name=mRNA_S-dermatodea_contig86.16754.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=269bp
MAITTVASTTRSVGTSLLLLLLLCCDAMVTAFVVTHCRARGWEICQGKAA
GDKLPFRSRPVHRQPRTMEMDLASLFFSFGQKNKQKTATRGTEVADRLSA
ELFSMLTDEGARPDDSAVMSKIEELEAAPGVTFNKDYLYDGPWRVLWKTN
TEWQRYFDPLNGLADNKSYQWYKEGGSVTNIAQALGEKLYVTVDGQGAPA
SESTELPYEVNVEVSRAWLHAFGGKVPLDFIKGKGTTFVVYNDAKLRVFR
SDTGGTVVQTKADEVVPV* back to topmRNA from alignment at S-dermatodea_contig86:25095..29559+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig86.16754.1 ID=mRNA_S-dermatodea_contig86.16754.1|Name=mRNA_S-dermatodea_contig86.16754.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4465bp|location=Sequence derived from alignment at S-dermatodea_contig86:25095..29559+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGGCCGGCGCATACGGGAACCTTAGGGTGGACCATCGCCGACAGTA
AAGGTCAGAAAGGGTGGCAATTGGAATTAGCTGAAGCCGTCCACGTGTGT
AGCGTGTACGACATCGTTAATTGCCTTCTGCACACAATGTAGATAGAGAG
AGCCAGTTCGTTGAGAGCTACCGTTACCACCCTCACATCTTCTCGAGGGC
GGTTCATGTATTGATTTCAACCTGCTCAACAGGTACGCAACCATAGGCTG
CAGAGCGGAGGTCAAGGGGGCTGGTGTCCGCGTCTCCGCTTGGCTTTGTT
CTTGTCGCCGATGTTCAGTTGTGCGCCATGCGTAGAGCCACGCAGAGCAC
ATGAGCGCCAACTCCCACCCACGATCATCATGTGCATGCCCGCTATTTCG
TCCCTACTGGTATGGTTCTTGTACAGCAACAGAGTATTCGAGCAACCCGA
TTGATACAACCAACATCAACATGGCGATTACTACCGTGGCCTCTACCACC
AGGAGCGTCGGTACGTCGCTCCTCCTCCTGCTGCTGCTCTGCTGTGATGC
GATGGTGACGGCCTTCGTGGTAACTCACTGCCGAGCGCGCGGATGGGAGA
TCTGCCAAGGAAAAGCCGCAGGCGACAAACTGCCGTTCAGAAGCCGGCCG
GTGCACCGGCAGCCGAGGACGATGGAAATGGATCTGGCTTCCCTCTTCTT
CTCGTTCGGACAGAAAAATAAGCAGAAGGCGAGCACTCGGGCTTGTCAAA
AAGGACATGTGCTACAGGCATGAGTAGTAAATAGCGTATTTTTTGTGTGA
GAGGGAATACGGCGTTTATTGATCCGCAAAATGCACTTGTGGTAGCACGG
CGGTGCTTGCCCACCGTGCTCATTACGTACTGTTGTATGATAGGGCGGAT
TACTTGCTGACCGGGGTCGTTTTTTTTTATCACCCCCCCCCCTGTGTGCC
ACCATCCCAGACAGCTACACGGGGGACGGAGGTTGCGGACCGGCTGAGCG
CGGAGCTATTCAGCATGCTCACGGACGAGGGAGCCAGACCCGACGACTCG
GCGGTCATGTCCAAGATCGAAGAGCTCGAGGTTCGGTAGTGCATGCAAGC
TGTTTGTATTGAAAAGAGTGCTGCACTCTTCAAGCGAGTCGAATACTGAA
AAGCGCGAACCACACGACGGTGCCGTTTAATAGCAGAGTGCAATAGTTTA
AACAAAAATGCTGTTGTTGAAATCATCACGAGACGACGCATGCGAGCGCA
CCAATCCGTATTTCCGTCAATACACGACTGCCCGTTTCCCGCGCGCTGGT
GGCCCATCCCGTGCATGCCCACGACCCACGCGAGCTCCGAGCTGGCGCCA
GACCATAAAGAGTATCGGGACGGCCCCCATGACCCTTCACAGCAGCCTTG
GCGTCTTGCCTTTTGATCGATGGGGCGTCAGCCGCGAAAATATAGAAAAC
GCTACTGTATACGCTCGATAGATTTTGTTGTTTTATTTATATTCTCTGCC
GCGGAAAGTGCGAGAGCGCGAGTAAACAAAATCCAAGGAATCGGAGAGCC
GCGGGAGTGCTAAACCCAACGCATGACCAAACTCTAAGGCAAGAACCGAG
GAGAGATGGGATTGTCCCTCGTGAATACAACCGGGATTGGGATAAGGCCG
GGCGGTCATGCATGAGCCACACACACACACGAGCGCTCGGGCGCACGAGC
TTCCGCGTGGGCCCTACCTTCTGTTCTGTCGACAGCAATCCCGTCAACCT
TGGCAACCGACGCCACCTTCCTTCCCCCTACTTGAAAAACCGCAGGCGGC
GCCGGGCGTGACGTTCAACAAGGACTACCTTTACGACGGTCCATGGCGCG
TGCTGTGGAAGACCAATACTGAGTGGCAGCGCTACTTCGACCCGCTGAAC
GGCCTGGCTGACAACAAATCATACCAGTGGTACAAGGAGGTGATAGTAGA
GGAAAACTCAGGCATTAACGCGCGTGACACGCTGCTCTTAACTGATGTGA
TCATTTCTACTGGTGTCACATCGATGGGTTTGTCCGAGTTTAGCGCGGTC
AGCATACGGAACGTTGGATGTTTTATTTCCCGAGAGATGAATGCGGGTGG
GCACGACGGAAACTTCGCCCTGATGGCAGCATCCTTCGCAATCGTGGACA
GGCAGCACACCGGAGGTCGGGCGTTCACAGAGTATACATTTGTTGCGTGG
TGTGTCTTGGATGACATTTGACGGAATGCCAAGCTAGGATAATATACACG
CACACCGTTCCAATTTCTCACCCAGAATGTTACACGAGAGAAGCTATAAA
ATCCCAGCTTGCTATCCATGCATTCCCTCTGTCGGAACAGGGAGGGTCGG
TTACGAACATCGCCCAGGCTCTGGGAGAGAAATTATACGTGACCGTGGAC
GGGCAGGGTGCTCCGGCATCTGAGAGCACGGAATTGCCGTACGAGGTACG
CGCGGAGTTGCACATTTCCCGTTTACAAATAGTTATCGGTCACGGTGTGG
TTCAAACTCGCTTGTCGTGTTTTTCTTCAGGAACATAGCAAACCTCTTTT
CACAACCAAGGCCAATGCGCCGATGCATACATCACGATTTCATCGGTTGA
ATCCTGCTCTCTCCGAGTGGCAGGTTGTGCCGAAGGCCTTGGTTTGTTCT
ACCCAAGGAAGCGTTATAGTAGTGCTCGCTTCTGACTCAGGCCGCAGTTA
TGTAAATAGCCAAACGTGAGTAGGATGCGATCTCGGACCGGACTCTTTGC
ATCACCGTACATTGCTGACGGCGCGATACTGGAAGCCAAATGCAAGAAAT
TGGAGCACACCCTTGGCAACGATGCGCACCTCTTCAAAGCGTCGGCAATT
TTGTCTCTTAACCCTGATTCCCCGCTGACAGGTCAACGTGGAAGTTTCTC
GCGCATGGTTGCACGCATTCGGCGGCAAGGTTCCCCTCGACTTCATCAAG
GTGGGCACTGATGCGCTTTACGTTGCGAGCACCGAGGTCGGGGTCAAGGG
CTGAGAATTATCGGCTCCTTCGGTTGGAAGCATAATCTATCCCAAAGTAG
CGCGCAATCGTTTCGTGAAGGTGGCCTTGGAGGAATATGTTGTCGTGTCT
GCGATTTATACTACTTAAGTAGTAACGATTCCCGAGCATTGGCGCGCCAG
GCTGGATGATCTTCGGTGGATATGACGAGGCCATCAGTATGCGGATGAGC
GCGTTCGCGGGGCGCGACACAGCGACCCGTTGTCGCAGTTTCTCGTCCAC
ACAATGTGGCGGGCCAAGTCAGCATAGATTCACCAGTTATATTTAGCGTC
TCAAAAGCGGCGAGCAAGAGCTGATTGCGATTTTCGCGCCAAAATCCTTC
AGAATCTAAGACGTTTGAGCACCTCTGCAGCGTCTCTTTTTTTACGCGGC
GACGATCTCTTCATGGTGTACTTGCTTTTATGACTCCCTTAGTGACAGAT
GCTGTGCTTTTTTACCTTCACTATTTCTCTGACGTTTTTCAGGGGAAGGG
GACAACATTCGTGGTGTACAACGACGCGAAGCTCAGGGTGTTCCGCTCGG
ACACCGGTGGCACCGTGGTGCAGACAAAGGCCGACGAGGTCGTGCCTGTG
TGAATAAAAAAAAACACGTGACCACGTCGCTGTCCAAATCTCGGAGGGCA
TGAGGTGTTCGTGGTGGTTAGTTTGGGCGCCCACACAGTGGTAGCCTTGT
CTTAGTTTCACGTAGTACTTACGAAGCGATTGGCTCGCGACACAGCGGCG
CTATGTAGTGAAAGCAGCCTTACGTGCATGTAAACTGGAAGGTGTGCTTG
TGACGGAATTCCGTAGACGTCTTACACGGTTTATCCAGCCTGTTGCTTCG
AGGGAGAGCAGTCCCGTGCATGTATGCTGTACCGTGATCAATTTACGCCG
TACAAGTAGCGTCTTGTCGTGGCAATGCTGCAGAAAAAAAACGTGATCAA
AATAATGGCGTTCCTCTTCGCACGATTGTCTGCTGTTTGTTTATTTTACG
CTGGGGCAGCACCCTACAGCATCGGCCTTCGTTTTTGACACCCACCGAGG
GATCGACCGAAGCTGAGCGTTTTGTTTGTCCGAATAAGAGTTGGCACAAG
AACGTCTGGCAACTATGTGACAGAATTGCAGCACGCCGCCGACCTGCTCT
TGGAGGCGTTGAACCGTGCTAGAGGTGTCGCGTATTACAGTAACGGTCCA
CCCTGCGCTCTGTGCGCTCGTTGTTGAAGCTTCGAAGGTTTCAATTCGTT
CCTACAAAGTGAATCGCACATCGCTGAGACTCTGTAGCTTGTCGATTCGT
AAGCGGTGTGTTACGCCCACTGTCTGGACGACTAGTTGGGGCTTGTTGTT
ACTCACCGGCAACATCATGTTGGTGCCGTCGGCTTCCCGGGTCCTAATGT
TTCAGGCATTTTGGACCTTTCGTGCTGTTACAAGGCACTAAAATCTGTGC
TCCTTGAGAATTTTC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig86:25095..29559+ >mRNA_S-dermatodea_contig86.16754.1 ID=mRNA_S-dermatodea_contig86.16754.1|Name=mRNA_S-dermatodea_contig86.16754.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at S-dermatodea_contig86:25095..29559+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGATTACTACCGTGGCCTCTACCACCAGGAGCGTCGGTACGTCGCT
CCTCCTCCTGCTGCTGCTCTGCTGTGATGCGATGGTGACGGCCTTCGTGG
TAACTCACTGCCGAGCGCGCGGATGGGAGATCTGCCAAGGAAAAGCCGCA
GGCGACAAACTGCCGTTCAGAAGCCGGCCGGTGCACCGGCAGCCGAGGAC
GATGGAAATGGATCTGGCTTCCCTCTTCTTCTCGTTCGGACAGAAAAATA
AGCAGAAGATGGCGATTACTACCGTGGCCTCTACCACCAGGAGCGTCGGT
ACGTCGCTCCTCCTCCTGCTGCTGCTCTGCTGTGATGCGATGGTGACGGC
CTTCGTGGTAACTCACTGCCGAGCGCGCGGATGGGAGATCTGCCAAGGAA
AAGCCGCAGGCGACAAACTGCCGTTCAGAAGCCGGCCGGTGCACCGGCAG
CCGAGGACGATGGAAATGGATCTGGCTTCCCTCTTCTTCTCGTTCGGACA
GAAAAATAAGCAGAAGACAGCTACACGGGGGACGGAGGTTGCGGACCGGC
TGAGCGCGGAGCTATTCAGCATGCTCACGGACGAGGGAGCCAGACCCGAC
GACTCGGCGGTCATGTCCAAGATCGAAGAGCTCGAGACAGCTACACGGGG
GACGGAGGTTGCGGACCGGCTGAGCGCGGAGCTATTCAGCATGCTCACGG
ACGAGGGAGCCAGACCCGACGACTCGGCGGTCATGTCCAAGATCGAAGAG
CTCGAGGCGGCGCCGGGCGTGACGTTCAACAAGGACTACCTTTACGACGG
TCCATGGCGCGTGCTGTGGAAGACCAATACTGAGTGGCAGCGCTACTTCG
ACCCGCTGAACGGCCTGGCTGACAACAAATCATACCAGTGGTACAAGGAG
GCGGCGCCGGGCGTGACGTTCAACAAGGACTACCTTTACGACGGTCCATG
GCGCGTGCTGTGGAAGACCAATACTGAGTGGCAGCGCTACTTCGACCCGC
TGAACGGCCTGGCTGACAACAAATCATACCAGTGGTACAAGGAGGGAGGG
TCGGTTACGAACATCGCCCAGGCTCTGGGAGAGAAATTATACGTGACCGT
GGACGGGCAGGGTGCTCCGGCATCTGAGAGCACGGAATTGCCGTACGAGG
GAGGGTCGGTTACGAACATCGCCCAGGCTCTGGGAGAGAAATTATACGTG
ACCGTGGACGGGCAGGGTGCTCCGGCATCTGAGAGCACGGAATTGCCGTA
CGAGGTCAACGTGGAAGTTTCTCGCGCATGGTTGCACGCATTCGGCGGCA
AGGTTCCCCTCGACTTCATCAAGGTCAACGTGGAAGTTTCTCGCGCATGG
TTGCACGCATTCGGCGGCAAGGTTCCCCTCGACTTCATCAAGGGGAAGGG
GACAACATTCGTGGTGTACAACGACGCGAAGCTCAGGGTGTTCCGCTCGG
ACACCGGTGGCACCGTGGTGCAGACAAAGGCCGACGAGGTCGTGCCTGTG
TGAGGGAAGGGGACAACATTCGTGGTGTACAACGACGCGAAGCTCAGGGT
GTTCCGCTCGGACACCGGTGGCACCGTGGTGCAGACAAAGGCCGACGAGG
TCGTGCCTGTGTGA back to top
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