prot_S-dermatodea_contig8587.16747.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8587.16747.1
Unique Nameprot_S-dermatodea_contig8587.16747.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length324
Homology
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 3.840e-68
Identity = 130/283 (45.94%), Postives = 178/283 (62.90%), Query Frame = 0
Query:    2 GLGLVRDALAPSSQRAYKGYLGSWIQFR-NLMGL-TYFLPSTN--DHLDALVEYAAYAFGSKGLQAKTIEGHLSAIKFFHRVYTGVDLNVRHPVLGGLLNCVRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVRVHEGSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMVSGECAVSLQSQAMRALRELVAKADM 280
            G  LVR ALAPSS+R Y G+ G+W++FR +++G  T+ +PS+   D +  L+EY AYAF   GL+  TI GHLSA+KFFHR+   ++++  H ++   L  V RGHA VG QQR+RRP+SW+ + EG  L   WG  GR L+L L AS+F L  A EMFA    + +    L+R DVAFF GS+QL  +    A+R+EVRFR SKGDQFR+ AV  R   G    V  GGGAV +++ELLS     P +APL ++    G  +V  +  A  ALR++V+ A +
Sbjct:   45 GFELVRHALAPSSERTYLGFFGAWVKFREDVVGRPTFMMPSSPSPDSVSQLLEYVAYAFTVLGLRQTTIAGHLSAVKFFHRLAYAMEVDTCHSLIKQALKGVARGHAGVGAQQRVRRPVSWSMLKEGGRLVPQWGTRGRVLFLALSASFFFLMRACEMFAVSSLAMDSCHGLRRGDVAFFLGSRQLPPERRGEADRVEVRFRSSKGDQFRKGAVCTRARPGPPQSVECGGGAVDVMIELLSCFPVLPSSAPLVAFGTGEGRWSVWTRRHATEALRQVVSLAGL 327          
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 2.500e-61
Identity = 135/329 (41.03%), Postives = 189/329 (57.45%), Query Frame = 0
Query:    6 VRDALAPSSQRAYKGYLGSWIQFRNLMGLTYFLPSTNDHL---DALVEYAAYAFGSKGLQAKTIEGHLSAIKFFHRVYTGVDLNVRHPVLGGLLNCVRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVRVHE---GSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMV-SGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASD-VLQRQRRWNYDA--HKVYVR 324
            VR+++A SS+R Y     +W  FR ++G + +L    D      AL+E+ A+    KG  A TI G L+A+++FHRV   ++L    P++ G L    R H   GT+ R R P+SW  +LEG+ L A WG GGR LWLCL  SYF +A + E+ A      +   CL+R DV FF G   L+   W  A  + VRFR  KGDQ  + A V RV E   G+++++ AGGGAVA+LVEL++ H   P++APL S+R   S    V    +A+ ALR++V KA   P +  LHS RIG AT L+AGG   D ++Q + RW   +   K+Y R
Sbjct:  563 VRESVAQSSRRTYLSGWRAWCAFRRMIGESEYLSGDADGAGLEQALLEFVAWCCADKGNVAPTISGKLAAVQYFHRVDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDVEFFDGEDVLAQLHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYPKALSALRQIVDKAGGDPKQVGLHSLRIGAATTLAAGGDVPDRIIQSEGRWKEASGTFKIYTR 891          
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 5.700e-45
Identity = 102/233 (43.78%), Postives = 136/233 (58.37%), Query Frame = 0
Query:   99 VRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVRVHE---GSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMV-SGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASD-VLQRQRRWNYDA--HKVYVR 324
            V R H   GT+ R R P+SW  +LEG+ L A WG GGR LWL L  SYF +A + E+FA      +   CL+R DV FF G   L+   W  A  + VRFR  KGDQ  + A V RV E   G+++++ AGGGAVA+LVEL++ H   P++APL S+R   S    V   S+A+ A  ++V KA   P +  LHS RIG AT L+AGG   D ++Q + RW   +   K+Y R
Sbjct:   42 VARVHVRAGTKSRNRVPVSWETLLEGQQLTASWGTGGRALWLWLALSYFLVARSDEVFATLSGQCHQVHCLRRSDVEFFDGEDVLAQLHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEGSGTFKIYTR 272          
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5KZQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ1_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.310e-43
Identity = 112/323 (34.67%), Postives = 168/323 (52.01%), Query Frame = 0
Query:    9 ALAPSSQRAYKGYLGSWIQFRNLMGLTYFLPSTNDHLDALVEYAAYAFGSKGL----QAKTIEGHLSAIKFFHRVYTGVDLNVRHPVLGGLLNCVRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVR---VHEGSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMVSGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASDVLQRQRRWNYDAHKVYVR 324
            +L  S+ + Y     +W   R    L+ +L    D +D+ V        S+ L    Q++T++G+L+AIK+FH++Y G +L   H  +  + N + R HA   T+  +R+PL+   I+ G   A    A     W+ +  SYF L  ASE++A      + + CL R ++ FF GS QL+WD    A+R+EV FR SK DQ RR A+V R   + +    ++    GA+ +L+ LL +H      APL    +  G  AV  +S+A  ALR++  +    P  FALHS RIGGATQL+  G +   +QR  RW   A   YVR
Sbjct:    5 SLNASTLKGYHSKWDTWTAERAKANLSPWLYE-EDGVDSAVRELTVFMASRCLVYKNQSQTVKGYLAAIKYFHKLYAGWELPTSHFRVVAVGNAIDRLHARAETKPLVRQPLTVPMIIAGRERAQT-DAFRLVTWMGIALSYFLLCRASELWAYHNGLVHADFCLTRGNLVFFEGSCQLAWDERRRADRVEVTFRASKADQKRRGAIVTRERVMRDEEGGQMAEKIGALEILLNLLDVHPELGSTAPLMQ-SVKQGRWAVVSRSEATAALRDMARRVGENPTHFALHSGRIGGATQLAKQGASGVQIQRVGRWKSGAIMTYVR 324          
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.480e-41
Identity = 97/322 (30.12%), Postives = 172/322 (53.42%), Query Frame = 0
Query:    5 LVRDALAPSSQRAYKGYLGSWIQFRNLMGLTYFLPSTNDH--LDALVEYAAYAFGSKGLQAKTIEGHLSAIKFFHRVYTGVDLNVRHPVLGGLLNCVRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVRVHEGSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMVSGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASDVLQRQRRWNYDAHKVYVR 324
            +V+ ++  ++ + Y     +W +F +  G+  +L   +    ++ L+E+ A    +   Q  T+ G+L+A+KFFH+++ G ++   H ++      + R    VG + ++R PL+W+ + +G    + +  GGR +WL L  +YF L  ASE+FA  +   + E CL R  + F+RG++++  +    A+ ++V F  SKGDQ R    + R       +     GA   +V +L +H   P NAPL + +  SG   ++ +++ + ALR +V    + P  FALHS RIG ATQ++A G+++  +Q   RW   A  VYVR
Sbjct:    1 MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSLTFYRGTERVGIEDRALADSVQVDFIASKGDQNRDGRSITRGRSPLGPDGEVPVGAFEAVVAILDVHPELPGNAPLLTRQTPSGWRVIT-RTEGVAALRVMVESIGLNPAHFALHSGRIGAATQMAAQGLSALQIQHAGRWKSQAFMVYVR 321          
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5KN32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN32_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 4.100e-10
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 0
Query:  228 GAVALLVELLSLHTNFPDNAPLASYRMVSGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASDVLQRQRRWNYDAHKVYVR 324
            GA+ +L+ LL +H     +APL    +  G  AV  +S+A   LR++  +    P  FALHS RIGGATQL+  G +   +QR  RW   A   YVR
Sbjct:    6 GALEILLNLLDVHPELGSSAPLMQ-SVKQGRWAVVSRSEATTVLRDMARRVGEDPTHFALHSGRIGGATQLAKQGASVVQIQRAGRWKSGAFMTYVR 101          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K3G1_9PHAE3.840e-6845.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTP7_9PHAE2.500e-6141.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K718_9PHAE5.700e-4543.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZQ1_9PHAE5.310e-4334.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK3_9PHAE1.480e-4130.12Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN32_9PHAE4.100e-1040.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10coord: 152..324
e-value: 1.3E-6
score: 30.3
IPR010998Integrase/recombinase, N-terminalGENE3D1.10.150.130coord: 5..109
e-value: 4.4E-9
score: 38.4
NoneNo IPR availablePANTHERPTHR34605FAMILY NOT NAMEDcoord: 9..324
NoneNo IPR availablePANTHERPTHR34605:SF3coord: 9..324
NoneNo IPR availableSUPERFAMILY47823lambda integrase-like, N-terminal domaincoord: 5..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8587contigS-dermatodea_contig8587:7736..8707 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8587.16747.1mRNA_S-dermatodea_contig8587.16747.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8587 7736..8707 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8587.16747.1 ID=prot_S-dermatodea_contig8587.16747.1|Name=mRNA_S-dermatodea_contig8587.16747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=324bp
LGLGLVRDALAPSSQRAYKGYLGSWIQFRNLMGLTYFLPSTNDHLDALVE
YAAYAFGSKGLQAKTIEGHLSAIKFFHRVYTGVDLNVRHPVLGGLLNCVR
RGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLA
GASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRL
SKGDQFRREAVVVRVHEGSAAEVRAGGGAVALLVELLSLHTNFPDNAPLA
SYRMVSGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSA
GGVASDVLQRQRRWNYDAHKVYVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat_sf
IPR010998Integrase_recombinase_N