mRNA_S-dermatodea_contig8587.16747.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE) HSP 1 Score: 226 bits (575), Expect = 3.840e-68 Identity = 130/283 (45.94%), Postives = 178/283 (62.90%), Query Frame = 1
Query: 4 GLGLVRDALAPSSQRAYKGYLGSWIQFR-NLMGL-TYFLPSTN--DHLDALVEYAAYAFGSKGLQAKTIEGHLSAIKFFHRVYTGVDLNVRHPVLGGLLNCVRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVRVHEGSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMVSGECAVSLQSQAMRALRELVAKADM 840
G LVR ALAPSS+R Y G+ G+W++FR +++G T+ +PS+ D + L+EY AYAF GL+ TI GHLSA+KFFHR+ ++++ H ++ L V RGHA VG QQR+RRP+SW+ + EG L WG GR L+L L AS+F L A EMFA + + L+R DVAFF GS+QL + A+R+EVRFR SKGDQFR+ AV R G V GGGAV +++ELLS P +APL ++ G +V + A ALR++V+ A +
Sbjct: 45 GFELVRHALAPSSERTYLGFFGAWVKFREDVVGRPTFMMPSSPSPDSVSQLLEYVAYAFTVLGLRQTTIAGHLSAVKFFHRLAYAMEVDTCHSLIKQALKGVARGHAGVGAQQRVRRPVSWSMLKEGGRLVPQWGTRGRVLFLALSASFFFLMRACEMFAVSSLAMDSCHGLRRGDVAFFLGSRQLPPERRGEADRVEVRFRSSKGDQFRKGAVCTRARPGPPQSVECGGGAVDVMIELLSCFPVLPSSAPLVAFGTGEGRWSVWTRRHATEALRQVVSLAGL 327
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE) HSP 1 Score: 219 bits (559), Expect = 2.500e-61 Identity = 135/329 (41.03%), Postives = 189/329 (57.45%), Query Frame = 1
Query: 16 VRDALAPSSQRAYKGYLGSWIQFRNLMGLTYFLPSTNDHL---DALVEYAAYAFGSKGLQAKTIEGHLSAIKFFHRVYTGVDLNVRHPVLGGLLNCVRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVRVHE---GSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMV-SGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASD-VLQRQRRWNYDA--HKVYVR 972
VR+++A SS+R Y +W FR ++G + +L D AL+E+ A+ KG A TI G L+A+++FHRV ++L P++ G L R H GT+ R R P+SW +LEG+ L A WG GGR LWLCL SYF +A + E+ A + CL+R DV FF G L+ W A + VRFR KGDQ + A V RV E G+++++ AGGGAVA+LVEL++ H P++APL S+R S V +A+ ALR++V KA P + LHS RIG AT L+AGG D ++Q + RW + K+Y R
Sbjct: 563 VRESVAQSSRRTYLSGWRAWCAFRRMIGESEYLSGDADGAGLEQALLEFVAWCCADKGNVAPTISGKLAAVQYFHRVDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDVEFFDGEDVLAQLHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYPKALSALRQIVDKAGGDPKQVGLHSLRIGAATTLAAGGDVPDRIIQSEGRWKEASGTFKIYTR 891
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE) HSP 1 Score: 164 bits (415), Expect = 5.700e-45 Identity = 102/233 (43.78%), Postives = 136/233 (58.37%), Query Frame = 1
Query: 295 VRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVRVHE---GSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMV-SGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASD-VLQRQRRWNYDA--HKVYVR 972
V R H GT+ R R P+SW +LEG+ L A WG GGR LWL L SYF +A + E+FA + CL+R DV FF G L+ W A + VRFR KGDQ + A V RV E G+++++ AGGGAVA+LVEL++ H P++APL S+R S V S+A+ A ++V KA P + LHS RIG AT L+AGG D ++Q + RW + K+Y R
Sbjct: 42 VARVHVRAGTKSRNRVPVSWETLLEGQQLTASWGTGGRALWLWLALSYFLVARSDEVFATLSGQCHQVHCLRRSDVEFFDGEDVLAQLHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEGSGTFKIYTR 272
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5KZQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ1_9PHAE) HSP 1 Score: 160 bits (405), Expect = 5.310e-43 Identity = 112/323 (34.67%), Postives = 168/323 (52.01%), Query Frame = 1
Query: 25 ALAPSSQRAYKGYLGSWIQFRNLMGLTYFLPSTNDHLDALVEYAAYAFGSKGL----QAKTIEGHLSAIKFFHRVYTGVDLNVRHPVLGGLLNCVRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVR---VHEGSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMVSGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASDVLQRQRRWNYDAHKVYVR 972
+L S+ + Y +W R L+ +L D +D+ V S+ L Q++T++G+L+AIK+FH++Y G +L H + + N + R HA T+ +R+PL+ I+ G A A W+ + SYF L ASE++A + + CL R ++ FF GS QL+WD A+R+EV FR SK DQ RR A+V R + + ++ GA+ +L+ LL +H APL + G AV +S+A ALR++ + P FALHS RIGGATQL+ G + +QR RW A YVR
Sbjct: 5 SLNASTLKGYHSKWDTWTAERAKANLSPWLYE-EDGVDSAVRELTVFMASRCLVYKNQSQTVKGYLAAIKYFHKLYAGWELPTSHFRVVAVGNAIDRLHARAETKPLVRQPLTVPMIIAGRERAQT-DAFRLVTWMGIALSYFLLCRASELWAYHNGLVHADFCLTRGNLVFFEGSCQLAWDERRRADRVEVTFRASKADQKRRGAIVTRERVMRDEEGGQMAEKIGALEILLNLLDVHPELGSTAPLMQ-SVKQGRWAVVSRSEATAALRDMARRVGENPTHFALHSGRIGGATQLAKQGASGVQIQRVGRWKSGAIMTYVR 324
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.480e-41 Identity = 97/322 (30.12%), Postives = 172/322 (53.42%), Query Frame = 1
Query: 13 LVRDALAPSSQRAYKGYLGSWIQFRNLMGLTYFLPSTNDH--LDALVEYAAYAFGSKGLQAKTIEGHLSAIKFFHRVYTGVDLNVRHPVLGGLLNCVRRGHAEVGTQQRMRRPLSWADILEGEHLAALWGAGGRELWLCLGASYFCLAGASEMFAAGERSSNFERCLQRRDVAFFRGSQQLSWDLWPAAERLEVRFRLSKGDQFRREAVVVRVHEGSAAEVRAGGGAVALLVELLSLHTNFPDNAPLASYRMVSGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASDVLQRQRRWNYDAHKVYVR 972
+V+ ++ ++ + Y +W +F + G+ +L + ++ L+E+ A + Q T+ G+L+A+KFFH+++ G ++ H ++ + R VG + ++R PL+W+ + +G + + GGR +WL L +YF L ASE+FA + + E CL R + F+RG++++ + A+ ++V F SKGDQ R + R + GA +V +L +H P NAPL + + SG ++ +++ + ALR +V + P FALHS RIG ATQ++A G+++ +Q RW A VYVR
Sbjct: 1 MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSLTFYRGTERVGIEDRALADSVQVDFIASKGDQNRDGRSITRGRSPLGPDGEVPVGAFEAVVAILDVHPELPGNAPLLTRQTPSGWRVIT-RTEGVAALRVMVESIGLNPAHFALHSGRIGAATQMAAQGLSALQIQHAGRWKSQAFMVYVR 321
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Match: A0A6H5KN32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN32_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 4.100e-10 Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 1
Query: 682 GAVALLVELLSLHTNFPDNAPLASYRMVSGECAVSLQSQAMRALRELVAKADMQPHEFALHSQRIGGATQLSAGGVASDVLQRQRRWNYDAHKVYVR 972
GA+ +L+ LL +H +APL + G AV +S+A LR++ + P FALHS RIGGATQL+ G + +QR RW A YVR
Sbjct: 6 GALEILLNLLDVHPELGSSAPLMQ-SVKQGRWAVVSRSEATTVLRDMARRVGEDPTHFALHSGRIGGATQLAKQGASVVQIQRAGRWKSGAFMTYVR 101 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8587.16747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8587.16747.1 >prot_S-dermatodea_contig8587.16747.1 ID=prot_S-dermatodea_contig8587.16747.1|Name=mRNA_S-dermatodea_contig8587.16747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=324bp LGLGLVRDALAPSSQRAYKGYLGSWIQFRNLMGLTYFLPSTNDHLDALVEback to top mRNA from alignment at S-dermatodea_contig8587:7736..8707+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8587.16747.1 ID=mRNA_S-dermatodea_contig8587.16747.1|Name=mRNA_S-dermatodea_contig8587.16747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig8587:7736..8707+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8587:7736..8707+ >mRNA_S-dermatodea_contig8587.16747.1 ID=mRNA_S-dermatodea_contig8587.16747.1|Name=mRNA_S-dermatodea_contig8587.16747.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at S-dermatodea_contig8587:7736..8707+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |