mRNA_S-dermatodea_contig8587.16746.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8587.16746.1
Unique NamemRNA_S-dermatodea_contig8587.16746.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8587.16746.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 6.990e-59
Identity = 118/281 (41.99%), Postives = 163/281 (58.01%), Query Frame = 1
Query:    1 TCLEVLGFLIYSKRMTVSLPASKMDKLRGRLEDWPRSRRTATTKHVASLLGFFLHVSFVVRPGRFLVGRMLSSTGVE-LSAAGDEFS---VRSRDRSRAVPLSPEFHGGLDFWCWLVGEGVAARG-GSLTAPMHNFVSRPPAPTILTDASKTAVGGFCVELGLWWRYDLSGPER-----QGFADGRFAINVLERLGMVLAAYVLVVLRGDAPVATGDRVLLRGGNNSAVHWINRCREGAYPRSGALMRLLGLLEIAGGWCFSAEHVPGVLNVEADGISRWE 813
            T +E+LG++I +  +T+S+   K+ K+R  L +WP  RR AT   V SLLG  LH+  VVRPG+F V R+L+  G+  + A GD  +   V  + R   V L  EFH  L FW  ++       G   L AP+     + P+ T+++DAS   +GGFC+E G WWR D +   R     + F+    ++NV E LGMV+ A+ L V  G  P   G  +L+RG N SAVHW+N+CR    PRSG LMR+LG LE+   W F A+H+ GV N  ADGISRW+
Sbjct:  693 TRMEMLGWVIDTVALTISVSQEKVAKMRAMLAEWPVERRVATVTEVRSLLGKLLHLCEVVRPGKFFVRRILNQLGLPPMKAGGDAGTGVMVGGKHRRGRVRLGREFHEDLAFWRKVMAMATGPDGIVKLEAPLLCSFLQAPSRTLVSDASGDGMGGFCLESGQWWRIDFTDDIRARLRNRVFSRDDLSMNVFELLGMVVTAWALTVQAGVKPEYPGQSILMRGDNMSAVHWVNKCRGAKEPRSGTLMRMLGCLEMRSEWRFRAKHIKGVANTLADGISRWK 973          
BLAST of mRNA_S-dermatodea_contig8587.16746.1 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.550e-56
Identity = 118/278 (42.45%), Postives = 160/278 (57.55%), Query Frame = 1
Query:    1 TCLEVLGFLIYSKRMTVSLPASKMDKLRGRLE-DWPRSRRTATTKHVASLLGFFLHVSFVVRPGRFLVGRMLSSTGVELSAAGDEFSVRSRDRSRAVPLSPEFHGGLDFWCWLVGEGVAARGGSLTAPMHNFVSRPPAPTILTDASKTAVGGFCVELGLWWRYDLS---GPERQGFADGR----FAINVLERLGMVLAAYVLVVLRGDAPVATGDRVLLRGGNNSAVHWINRCREGAYPRSGALMRLLGLLEIAGGWCFSAEHVPGVLNVEADGISRW 810
            T LE LGF+I S ++ +SL   K + L+  LE DWPR +R AT + V S+ G   ++++VVR G++ V R+L  TG+            +R+ S  V L  EFH  LDF+ W +   +   G SL AP +  V R P    L+DAS  A+GGFC E  ++WRYDL      E +  A  R      IN+LE +GMV+ A+V+  L GD P    D VL+RG N +AV W NRC      R+  +MR+LG LEI+G W + A+H+PGV N  ADGISRW
Sbjct: 1233 TQLEYLGFVIDSHKLKISLTTKKAEALKTALEIDWPRHKREATAQEVFSIAGKLWNLTYVVRAGKYFVWRLLRLTGLHRK--------HTRNCSHVVELGREFHDDLDFFRWAIEHELLTAGESLNAPCYGVVKRQPKRLYLSDASFDAIGGFCPEKRVFWRYDLPLDFATELKQKAARRETCSVTINLLELVGMVMTAWVMHSLVGDRPKNNNDPVLMRGDNMAAVTWSNRCGGARDKRACLMMRMLGRLEISGEWSYEAKHIPGVKNTLADGISRW 1502          
BLAST of mRNA_S-dermatodea_contig8587.16746.1 vs. uniprot
Match: A0A6H5KIK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIK3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.930e-33
Identity = 64/144 (44.44%), Postives = 85/144 (59.03%), Query Frame = 1
Query:  382 MHNFVSRPPAPTILTDASKTAVGGFCVELGLWWRYDLSGPERQGFADGRFAINVLERLGMVLAAYVLVVLRGDAPVATGDRVLLRGGNNSAVHWINRCREGAYPRSGALMRLLGLLEIAGGWCFSAEHVPGVLNVEADGISRWE 813
            M+N V RPP   I TDASK+A GGFC E G ++R  L+  E+  F     ++  ++ + +            +     G+RV LRG N  +V WI RCR G  PRS ALMR+LG +E++ GW F + HVPGVLN  ADGISRW+
Sbjct:    1 MYNLVLRPPRLAIFTDASKSAFGGFCAETGAYFRRALTSDEQSRFVGSSKSVEGVDDISI------------NVLPEAGNRVQLRGDNEDSVAWIQRCRGGKEPRSSALMRMLGAIEVSSGWLFQSSHVPGVLNSIADGISRWQ 132          
BLAST of mRNA_S-dermatodea_contig8587.16746.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 4.800e-31
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 1
Query:  445 VGGFCVELGLWWRYDLSGPERQGFAD-----GRFAINVLERLGMVLAAYVLVVLRGDAPVATGDRVLLRGGNNSAVHWINRCREGAYPRSGALMRLLGLLEIAGGWCFSAEHVPGVLNVEADGISRWE 813
            +GG+C+E G WWR D S   R    +        ++NV E LGMV+ A+ L V  GD P   G  VL+RG N SAVHW+N+CR    PRSGALMR++G LE+   W F A+H+ G+ N  A+GISRW+
Sbjct:    1 MGGYCLETGWWWRIDFSADVRARLRNRVCKRDDLSMNVFELLGMVMTAWALTVHAGDRPEYPGQSVLMRGDNMSAVHWVNKCRGAKEPRSGALMRMMGCLEMRNEWRFRAKHIKGLANTLANGISRWK 128          
BLAST of mRNA_S-dermatodea_contig8587.16746.1 vs. uniprot
Match: A0A6H5KZM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.400e-23
Identity = 60/165 (36.36%), Postives = 94/165 (56.97%), Query Frame = 1
Query:    1 TCLEVLGFLIYSKRMTVSLPASKMDKLRGRLE-DWPRSRRTATTKHVASLLGFFLHVSFVVRPGRFLVGRMLSSTGVELSAAGDEFSVRSRDRSRAVPLSPEFHGGLDFWCWLVGEGVAARGGSLTAPMHNFVSRPPAPTILTDASKTAVGGFCVELGLWWRYDL 492
            T +E LG++I +    ++    ++  +R  LE DWP  R+ A  + V S+ G   +++ V+R GR+ V ++L  +G+   A     S  +R R R V L  EFHG + FW W + + +A RG SL+A     V R P+   L+DAS TA+GG+C EL ++WRY +
Sbjct:  314 TVIEALGYIIDTHAGRIATTPERVSAIRNILETDWPHDRKKARVQQVLSIAGKLWNLTHVIRAGRYFVWQLLRLSGLHTQA-----SRHTRSR-RLVDLGREFHGDIAFWKWALNQPLALRGESLSASFLLHVKRAPSRLHLSDASFTAIGGYCPELKIFWRYTI 472          
BLAST of mRNA_S-dermatodea_contig8587.16746.1 vs. uniprot
Match: A0A6H5K7E5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E5_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.950e-19
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  508 QGFADGRFAINVLERLGMVLAAYVLVVLRGDAPVATGDRVLLRGGNNSAVHWINRCREGAYPRSGALMRLLGLLEIAGGWCFSA 759
            QG  D   +INVLE LGMV+ A++LV+ R   PV  GD V LRG N +A  WI RCR G  PRSGAL+RLLG LE+A GW F A
Sbjct:   22 QGVHD--VSINVLELLGMVMGAWMLVLGRSHQPVEAGDCVRLRGDNEAATAWIERCRGGLEPRSGALVRLLGALEVASGWHFHA 103          
BLAST of mRNA_S-dermatodea_contig8587.16746.1 vs. uniprot
Match: UPI0019A240CF (Uncharacterized protein n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=UPI0019A240CF)

HSP 1 Score: 57.4 bits (137), Expect = 9.590e-6
Identity = 79/273 (28.94%), Postives = 106/273 (38.83%), Query Frame = 1
Query:    1 TCLEVLGFLIYSKRMTVSLPASKMDKLRGRLEDWPRSRRTATTKHVASLLGFFLHVSFVVRPGRFLVGRMLSSTGVELSAAGDEFSVRSRDRSRAVPLSPEFHGGLDFWCWLVGEGVAARGGSLTAPMHNFVSRPPAPTILTDASKTAVGGFCVEL---GLWWRYDLSGPERQGFADG-RFAINVLERLGMVLAAYVLVVLRGDAPVATGDRVLLRGGNNSAVHWINRCREGAYPRSGALMRLLGLLEIAGGWCFSAEHVPGVLNVEADGISR 807
            T L  LG  + +  MT  L  SK+  L   L+ W   ++ AT   + SL G       V+RPGR  + R++  T    +  G      SR  +R V +   + G     C          G S+    +   S  P   I TDA +   G         G W    L     +   DG + ++  LE L ++LA          AP     R+ LR      V  I R R     RS AL+R L  L         A HVPGVLNV AD +SR
Sbjct:  266 TRLTFLGVELDTVAMTARLSESKLALLVSLLDGWA-GKQHATKVELQSLCGKLQWACQVIRPGRSYLRRIIDFTTTFGTYGG------SRAITREVRMDIAWWGQFAPTC---------NGHSML--YNEQWSAAPLVEIYTDACERGYGAVFGNRWIRGAWSPTQLQAARNRTAKDGSKLSMPYLELLALLLAVATW------APRWANMRITLRIDCLPVVQAIER-RASTLERSMALIRALHTLCARHSCDVRAIHVPGVLNVSADALSR 513          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8587.16746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE6.990e-5941.99Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGT0_9PHAE1.550e-5642.45Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIK3_9PHAE2.930e-3344.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCI7_9PHAE4.800e-3147.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZM1_9PHAE1.400e-2336.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E5_9PHAE3.950e-1958.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI0019A240CF9.590e-628.94Uncharacterized protein n=1 Tax=Thermoleophilia ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8587contigS-dermatodea_contig8587:6825..7637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog10224.XP_006824680.1
EggNOG OGs2DR3B@1,2S6D7@2759,39P7X@33154,3CQSP@33208,3E706@33213
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size813
Cds size813
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925353.5315204-CDS-S-dermatodea_contig8587:6824..76371622925353.5315204-CDS-S-dermatodea_contig8587:6824..7637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8587 6825..7637 +
1694079876.2008603-CDS-S-dermatodea_contig8587:6824..76371694079876.2008603-CDS-S-dermatodea_contig8587:6824..7637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8587 6825..7637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8587.16746.1prot_S-dermatodea_contig8587.16746.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8587 6825..7637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8587.16746.1

>prot_S-dermatodea_contig8587.16746.1 ID=prot_S-dermatodea_contig8587.16746.1|Name=mRNA_S-dermatodea_contig8587.16746.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=271bp
TCLEVLGFLIYSKRMTVSLPASKMDKLRGRLEDWPRSRRTATTKHVASLL
GFFLHVSFVVRPGRFLVGRMLSSTGVELSAAGDEFSVRSRDRSRAVPLSP
EFHGGLDFWCWLVGEGVAARGGSLTAPMHNFVSRPPAPTILTDASKTAVG
GFCVELGLWWRYDLSGPERQGFADGRFAINVLERLGMVLAAYVLVVLRGD
APVATGDRVLLRGGNNSAVHWINRCREGAYPRSGALMRLLGLLEIAGGWC
FSAEHVPGVLNVEADGISRWE
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mRNA from alignment at S-dermatodea_contig8587:6825..7637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8587.16746.1 ID=mRNA_S-dermatodea_contig8587.16746.1|Name=mRNA_S-dermatodea_contig8587.16746.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=813bp|location=Sequence derived from alignment at S-dermatodea_contig8587:6825..7637+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACATGTTTGGAGGTCTTGGGTTTCTTGATTTATTCTAAGCGCATGACTGT TAGCCTGCCTGCGTCTAAAATGGACAAGTTGCGCGGTAGGTTAGAGGATT GGCCACGATCGCGCCGCACGGCGACAACCAAACATGTTGCGTCCTTGCTT GGGTTTTTCCTCCACGTCTCTTTTGTCGTTCGCCCAGGCAGATTTCTTGT GGGGCGCATGCTTTCCTCAACGGGGGTTGAGCTGTCCGCTGCCGGCGACG AATTTTCCGTCCGCTCGCGTGACCGTAGCCGTGCTGTCCCCCTCTCCCCT GAGTTTCACGGTGGCCTTGATTTCTGGTGTTGGTTGGTCGGCGAGGGCGT CGCAGCACGGGGCGGATCCCTTACGGCGCCTATGCACAACTTCGTGTCTC GCCCCCCCGCGCCTACGATTTTAACCGACGCCTCGAAAACGGCTGTCGGT GGGTTTTGTGTCGAGTTGGGCCTTTGGTGGCGGTATGACCTCTCGGGTCC GGAGCGGCAGGGTTTCGCAGACGGCAGGTTTGCAATCAACGTCCTTGAGC GTCTTGGTATGGTATTGGCGGCGTACGTCTTGGTCGTCCTTCGGGGCGAC GCCCCCGTTGCCACGGGCGACCGTGTCCTCCTCAGGGGGGGCAACAACTC TGCCGTGCATTGGATTAATCGATGTCGTGAGGGAGCCTACCCCCGCTCCG GGGCACTGATGCGCTTATTGGGCTTGCTTGAGATTGCTGGGGGTTGGTGT TTTTCGGCTGAGCATGTACCCGGTGTTTTGAATGTTGAGGCGGACGGTAT CTCTCGTTGGGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8587:6825..7637+

>mRNA_S-dermatodea_contig8587.16746.1 ID=mRNA_S-dermatodea_contig8587.16746.1|Name=mRNA_S-dermatodea_contig8587.16746.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at S-dermatodea_contig8587:6825..7637+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACATGTTTGGAGGTCTTGGGTTTCTTGATTTATTCTAAGCGCATGACTGT
TAGCCTGCCTGCGTCTAAAATGGACAAGTTGCGCGGTAGGTTAGAGGATT
GGCCACGATCGCGCCGCACGGCGACAACCAAACATGTTGCGTCCTTGCTT
GGGTTTTTCCTCCACGTCTCTTTTGTCGTTCGCCCAGGCAGATTTCTTGT
GGGGCGCATGCTTTCCTCAACGGGGGTTGAGCTGTCCGCTGCCGGCGACG
AATTTTCCGTCCGCTCGCGTGACCGTAGCCGTGCTGTCCCCCTCTCCCCT
GAGTTTCACGGTGGCCTTGATTTCTGGTGTTGGTTGGTCGGCGAGGGCGT
CGCAGCACGGGGCGGATCCCTTACGGCGCCTATGCACAACTTCGTGTCTC
GCCCCCCCGCGCCTACGATTTTAACCGACGCCTCGAAAACGGCTGTCGGT
GGGTTTTGTGTCGAGTTGGGCCTTTGGTGGCGGTATGACCTCTCGGGTCC
GGAGCGGCAGGGTTTCGCAGACGGCAGGTTTGCAATCAACGTCCTTGAGC
GTCTTGGTATGGTATTGGCGGCGTACGTCTTGGTCGTCCTTCGGGGCGAC
GCCCCCGTTGCCACGGGCGACCGTGTCCTCCTCAGGGGGGGCAACAACTC
TGCCGTGCATTGGATTAATCGATGTCGTGAGGGAGCCTACCCCCGCTCCG
GGGCACTGATGCGCTTATTGGGCTTGCTTGAGATTGCTGGGGGTTGGTGT
TTTTCGGCTGAGCATGTACCCGGTGTTTTGAATGTTGAGGCGGACGGTAT
CTCTCGTTGGGAAACATGTTTGGAGGTCTTGGGTTTCTTGATTTATTCTA
AGCGCATGACTGTTAGCCTGCCTGCGTCTAAAATGGACAAGTTGCGCGGT
AGGTTAGAGGATTGGCCACGATCGCGCCGCACGGCGACAACCAAACATGT
TGCGTCCTTGCTTGGGTTTTTCCTCCACGTCTCTTTTGTCGTTCGCCCAG
GCAGATTTCTTGTGGGGCGCATGCTTTCCTCAACGGGGGTTGAGCTGTCC
GCTGCCGGCGACGAATTTTCCGTCCGCTCGCGTGACCGTAGCCGTGCTGT
CCCCCTCTCCCCTGAGTTTCACGGTGGCCTTGATTTCTGGTGTTGGTTGG
TCGGCGAGGGCGTCGCAGCACGGGGCGGATCCCTTACGGCGCCTATGCAC
AACTTCGTGTCTCGCCCCCCCGCGCCTACGATTTTAACCGACGCCTCGAA
AACGGCTGTCGGTGGGTTTTGTGTCGAGTTGGGCCTTTGGTGGCGGTATG
ACCTCTCGGGTCCGGAGCGGCAGGGTTTCGCAGACGGCAGGTTTGCAATC
AACGTCCTTGAGCGTCTTGGTATGGTATTGGCGGCGTACGTCTTGGTCGT
CCTTCGGGGCGACGCCCCCGTTGCCACGGGCGACCGTGTCCTCCTCAGGG
GGGGCAACAACTCTGCCGTGCATTGGATTAATCGATGTCGTGAGGGAGCC
TACCCCCGCTCCGGGGCACTGATGCGCTTATTGGGCTTGCTTGAGATTGC
TGGGGGTTGGTGTTTTTCGGCTGAGCATGTACCCGGTGTTTTGAATGTTG
AGGCGGACGGTATCTCTCGTTGGGAA
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