mRNA_S-dermatodea_contig8584.16742.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8584.16742.1
Unique NamemRNA_S-dermatodea_contig8584.16742.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 1.040e-84
Identity = 149/291 (51.20%), Postives = 183/291 (62.89%), Query Frame = 1
Query:   19 AQNVSSSDYPDCTGYAPYIQDGHCDEINNVADCGWDGGDCCPCTCLDD----LEHDCGVLTD-FDCVDPDVPDECGATPSPAAAFGFPDCTGYMYDLEDGNCDEDLNNEECGYDGGDCCRCTCTDDSGW----ECDRGSFDCKDPEAPDDCETASPTPSPAASYGYPDCTGTMYLHQNGYCSDDLNNEECGYDGGDYCCTCTCQSSSY-TCGTY-YNCLDPDAECVDSTSAQTTDDDTSVCSDPSRRGNGYCSYDLNTEACEYDGGDCCECTCSETSEIACGVNGYNCLDP 858
            A +  S +Y  C GY  +I+DG+CD   N A+CGWDGGDCC CTC  D    L H CG L D +DC+DPDVPD+CG TPSPAAA G+PDC  Y+Y+ +DG CD++LN  ECGYDGGDCCRCTC D + W     C    +DC DP+AP  C T SPTPSPAA   +P+C G +Y+  +G C    NNEEC +DGGD CC+CTC+ SSY +C +Y  +C DP+A C       TT   T  C   S   +GYC    NTE C++DGGDCC   CS T+          CLDP
Sbjct:   56 APSDGSPEYLGCLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCGSDSDEELAHPCGQLGDGYDCLDPDVPDDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAECGYDGGDCCRCTCRDYNSWGYYTNCGYYGYDCMDPDAPSSCSTDSPTPSPAAGTDWPECEGYIYMIGDGSCDYYNNNEECDWDGGD-CCSCTCEGSSYYSCSSYSMDCQDPNANC-------TTPSPTPYCPWAS---DGYCDSYYNTEDCDWDGGDCCAYGCSSTT----------CLDP 325          
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 2.380e-84
Identity = 153/300 (51.00%), Postives = 188/300 (62.67%), Query Frame = 1
Query:   19 AQNVSSSDYPDCTGYAPYIQDGHCDEINNVADCGWDGGDCCPCTCLDD----LEHDCGVLTD-FDCVDPDVPDECGATPSPAAAFGFPDCTGYMYDLEDGNCDEDLNNEECGYDGGDCCRCTCTDDSGW---ECDRGSFDCKDPEAPDDCETASPTPSPAASYGYPDCTGTMYLHQNGYCSDDLNNEECGYDGGDYCCTCTCQSSSY-TCGTY-YNCLDPDAECVDSTSAQTTDDDTSVCSDPSRRGNGYCSYDLNTEACEYDGGDCCECTCSETSEIACGVNGYNCLDPD-ACSSTTSS 885
            A +  SS+Y  C GY  +I+DG+CD   N A+CGWDGGDCC CTC  D    L H CG L D ++C+DPDVPD+CG TPSPAAA G+PDC  Y+Y+ +DG CD++LN   CGYDGGDCCRCTC D S W    C    +DC DP+AP  C T SPTPSPAA   +P+C G +Y+  +G C    NNEECG+DGGD CC+CTC+ S Y +C +Y  +C DP+A C       TT   T  C   S   +GYC    NTE C++DGGDCC   CS T+          CLDP   C S T+S
Sbjct:   56 APSDGSSEYLGCLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCGADSDEELAHPCGQLGDGYNCLDPDVPDDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAACGYDGGDCCRCTCRDYSSWGYSTCGYYGYDCMDPDAPSACSTDSPTPSPAAGTDWPECEGYIYMIGDGSCDYYNNNEECGWDGGD-CCSCTCEGSYYYSCSSYSMDCQDPNANC-------TTPSPTPYCPFAS---DGYCDSYYNTEDCDWDGGDCCAYGCSSTT----------CLDPIYGCDSITTS 334          
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 4.120e-59
Identity = 134/330 (40.61%), Postives = 172/330 (52.12%), Query Frame = 1
Query:   43 YPDCTGYAPYIQDGHCDEINNVADCGWDGGDCCPCTCLDDLEHDCGVLTD-FDCVDPDVPDECGATPSP------------------------AAAFGFPDCTGYMYDLEDGNCDEDLNNEECGYDGGDCCRCTCTDDSGWECDRG----SFDCKDPEAPDDCETASPTPSPAASYGYPDCTGTM-YLHQNGYCSDDLNNEECGYDGGDYCCTCTCQ---SSSY--TCGTY-YNCLDPDAECVDSTSAQTTDD----DTSVCSDPSRR-GNGYCSYDLNTEACEYDGGDCCECTCSETSEIACGVNGYNCLDPDACSSTTSSGSKTLEAD 909
            YPDC      + D  CD   NVA+CG+DGGDCC CTC+D  +  CG     + CVDPD P +C + PSP                        A+   +P C GY+  + DG CDED N   CG+DGGDCC CTC  D+  + + G     +DC+DP+ P+DC  A+          +  C G   Y  Q+GYC DDLN  ECGYDGGD CC CTC+   S  Y  +CG Y Y+CLDP+A    ST + T       D   C       G+G+C Y  N E C++DGGDCC CTC  +    CG   ++C DP    ST  S + TL++D
Sbjct:   61 YPDCEADTALVGDSICDLDFNVAECGFDGGDCCECTCVDTGDQVCGEGGGGYFCVDPDAPQDCASAPSPTPNTPSAPTSSDAIDVTAGPTSLDASDDPYPGCGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGMDAEVDHECGLLNDGYDCRDPDVPEDCNLAN----------FAQCEGMNGYDWQDGYCDDDLNTAECGYDGGD-CCRCTCRDYDSWGYYSSCGYYGYDCLDPEAPSSCSTDSPTPSPAAGTDWPECEGYLFEIGDGHCDYYNNNEECDWDGGDCCACTCV-SGYYTCGYYTFDCEDPSV--STDCSTTSTLDSD 376          
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.210e-56
Identity = 130/291 (44.67%), Postives = 158/291 (54.30%), Query Frame = 1
Query:   52 CTGYAPYIQDGHCDEINNVADCGWDGGDCCPCTCLDDLEHDCGVLTDFDCVDPDVPDECGATPSPAAAFGFPDCTGYMYDLEDGNCDEDLNNEECGYDGGDCCRCTCT---DDSGWECDRGS-------FDCKDPEAP---DDCETASPTPSPAASYGYPDCTGTMYLHQNGYCSDDLNNEECGYDGGDYCCTCTCQSSSYTCGTY-YNCLDPDAECVDSTSAQT--TDDDTSVCSDPSRRGNGYCSYDLNTEACEYDGGDCCECTCS----ETSEIACGVNGYNCLDPDA 864
            C G   ++ DG CD+INN  +CG+DGGDCC CTCLDD  ++CG+   F C+DP    EC A           +C   +  + DG CD D N EEC YDGGDCC CTC    DDSG   D GS       F C DP+AP   DD  T     +         C G      +G+C DD NN+ECGYD GD CC+CTC   +Y CG   ++C+DP AECVD     T  TDD    C +     NGYC +D N E C YDGGDCCECTC     E    +C  +G++C DP A
Sbjct:  177 CGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDF-YECGIRG-FACIDPSA--EC-ADDDDVTVDTVENCG--VRSIGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSG---DDGSLCSESTVFACIDPDAPCVNDDDITVDMMDT---------CGGHPINFGDGWCDDDNNNKECGYDSGD-CCSCTCVDGTYECGIVGFDCVDPSAECVDDDYPSTGVTDD----CGNAGTVANGYCDFDNNKEECAYDGGDCCECTCEPSGLEDGSDSC-TSGFDCQDPTA 442          
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 3.040e-50
Identity = 129/322 (40.06%), Postives = 162/322 (50.31%), Query Frame = 1
Query:    4 WSGVSAQNVSSSDYPDCTGYAPYIQDGHCDEINNVADCGWDGGDCCPCTCLDDLEHDCGVLTDFDCVDPDVP--DECGATPSPAAAFGFPDCTGYMYD---LEDGNCDEDLNNEECGYDGGDCCRCTCTD------DSGWECDRG---SFDCKDPEAP---DDCETASPTPSPAASYGYPDCTGTMYLHQNGYCSDDLNNEECGYDGGDYCCTCTCQSSS----YTCGT-YYNCLDPDAECVDSTSAQTTDDDTSV-----CSDPSRRGNGYCSYDLNTEACEYDGGDCCECTC----SETSEIAC----GVNGYNCLDPDA 864
            WS  S+   ++SD  D    A  I +G C+  NN+ +CG+DGGDCC CTC +D E+ CG    + C+DPD    D+   T          D     YD   + +G CD  LNNE+C YDGGDCC CTC        DSG  C  G    F C DP+AP   DD  TA             D   T  +  NGYC D  N+ EC YDGGD CC CTC+S      Y C    + C+DP+AECVD       DDD +      C   +R G+G C  + N E C +DGGDCC+CTC    S  S+ AC     +N ++CLD  A
Sbjct:   75 WSSASSVVATTSDQFDACDAAQDIGNGRCNMGNNIEECGFDGGDCCECTC-EDGEYTCGQYYGYACIDPDATCVDDDAVTV---------DMMENCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTCDPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMM----------DLCSTGQIG-NGYCDDSNNSPECAYDGGD-CCECTCESHDDGYEYYCEPGSFACIDPEAECVD-------DDDNTAEQYEHCGWVTRIGDGMCDDENNKEECGFDGGDCCDCTCVVPSSAWSDYACQEVYNINSFDCLDTSA 367          
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 3.480e-48
Identity = 106/250 (42.40%), Postives = 134/250 (53.60%), Query Frame = 1
Query:   43 YPDCTGYAPYIQDGHCDEINNVADCGWDGGDCCPCTCLDDLEHDCGVL-TDFDCVDPDVPDECGATPSP------------------------AAAFGFPDCTGYMYDLEDGNCDEDLNNEECGYDGGDCCRCTCTDDSGWECDRG----SFDCKDPEAPDDCETASPTPSPAASYGYPDCTGTM-YLHQNGYCSDDLNNEECGYDGGDYCCTCTCQ---SSSY--TCGTY-YNCLDPDAECVDSTSAQT 684
            YPDC      + D  CD   NVA+CG+DGGDCC CTC+D  +  CG   T + CVDPD P +C ++PSP                        A+   +P C GY+  + DG CDED N   CG+DGGDCC CTC  D+  E + G     +DC+DP+ PDDC  A+          +  C     Y  Q+GYC DDLN  ECGYDGGD CC CTC+   S  Y  +CG Y Y+C+DP+A    ST + T
Sbjct:   59 YPDCEADMALVGDSLCDFDVNVAECGFDGGDCCECTCVDTGDQVCGEGGTGYFCVDPDAPQDCASSPSPTPNTPSSPTSSDAIDVTAGPTSLDASDDPYPGCGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGVDADVEHECGLLGDGYDCRDPDVPDDCNLAN----------FAQCEDMNGYDWQDGYCDDDLNTPECGYDGGD-CCRCTCRDYNSWGYYNSCGYYGYDCMDPEAPSSCSTDSPT 297          
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.280e-47
Identity = 110/248 (44.35%), Postives = 133/248 (53.63%), Query Frame = 1
Query:  100 NNVADCGWDGGDCCPCTCLDDLEHDCGVLTDFDCVDPDVPDECGATPSPAAAFGFPDCTGYMYDLEDGNCDEDLNNEECGYDGGDCCRCTC--TDDSGWECDRGSFDCKDPEAP---DDCETASPTPSPAASYGYPDCTGTMYLHQNGYCSDDLNNEECGYDGGDYCCTCTCQS---SSYTCGTYYNCLDPDAECVDSTSAQTTDDDTSV-----CSDPSRRGNGYCSYDLNTEACEYDGGDCCECTC 804
            NN A C +DGGDCC CTC D   + CG  + F C+DP+ P         +      D   Y   + DG CDED NNE C YDGGDCC CTC  ++D  W C   +F C DP AP   DD  T     + + S G  D          GYCS++LN  EC YDGGD CC+CTC+S     + C  ++ C+DP+A CVD       DDD +V     C  P   GNG+C    N EAC YDGGDCCECTC
Sbjct:    3 NNNAACAYDGGDCCECTCEDTPNNKCGRWSGFACIDPEAP----CVDDDSFTVDMIDNCDYPGGIGDGWCDEDNNNELCAYDGGDCCECTCEGSEDDDWHC--RNFACVDPNAPCVDDDSVTIDMIENCSWSTGIGD----------GYCSENLNTPECAYDGGD-CCSCTCESPYDDDWGC-MWFACIDPEAACVD-------DDDITVDMFENCEYPVDIGNGWCDEANNIEACGYDGGDCCECTC 225          
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 6.230e-45
Identity = 131/328 (39.94%), Postives = 158/328 (48.17%), Query Frame = 1
Query:    7 SGVSAQNVSSSDYPDCTGYAPYIQDGHCDEINNVADCGWDGGDCCPCTCLDDLEHDCGVL-----TDFDCVDPDVP--DECGATPSPAAAFGFPDCTGYMYDLEDGNCDEDLNNEECGYDGGDCCRCTC---TDDSGWE------CDRGSFDCKDPEAP----DDCETASPTPSPAASYGYPDCTGTMYLHQNGYCSDDLNNEECGYDGGDYCCTCTCQSSSYTCG--TYYNCLDPDAECVDSTSAQTTDDDTSVCSDPSRRGNGYCSYDLNTEACEYDGGDCCECTCSET--SEIACGVNG--YNCLDPDA-CSSTTSSGSKTLEAD 909
            S V+A ++SSS   D         DG+C   NN A+CG+DGGDCC CTC +    D   +     + F CVDPD P   E G T   +    F       +DL DG CD+  NNE CGYDGGDCC CTC   TDD  W+      C  G F C DP AP    DD          A   G            +GYC  D NN  C YDGGD CC CTC+ ++  CG  + + C+DP A CVD  S   T D    C      GNG+C  + N E C YDGGDCCECTC      +  C      +NC DP+A C    ++GS     D
Sbjct:   19 SSVAANSLSSSGCWDAL-----YGDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQECDF-------WDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDD-WDNDLYVACGEG-FACIDPSAPCVNDDDITVDVDESCDAVGMG------------DGYCDMDNNNAACAYDGGD-CCECTCEPNN-KCGGRSGFACIDPGAPCVDDDSV--TVDMIDNCDYLRVMGNGWCDEENNNELCAYDGGDCCECTCESAWNDDYTCSSEHGTFNCKDPNASCFGEETTGSDDFSTD 316          
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 6.440e-45
Identity = 115/274 (41.97%), Postives = 146/274 (53.28%), Query Frame = 1
Query:  118 GWDGGDCCPCTCLD--DLEHDCGVL-TDFDCVDPDVP--DECGATPSPAAAFGFPDCTGYMYDLEDGNCDEDLNNEECGYDGGDCCRCTCTD--DSGWECDRGSFDCKDPEAP--DDCETASPTPSPAASYGYPDCTGTMYLHQNGYCSDDLNNEECGYDGGDYCCTCTCQ-------SSSYT---CGTYYNCLDPDAECVDSTSAQTTDDDTSV-----CSDPSRRGNGYCSYDLNTEACEYDGGDCCECTCSETSEIACGV-NGYNCLDPDA 864
            G+DGGDCC CTC+   D ++ C    + F CVDP  P  D+   T   A      +C  +  +  DG CD++ NNE CGYDGGDCC CTC +  D  + C   S  C DP AP  DD +    T     + GY    G      NG+C ++ NNE CGYDGGD CC CTCQ       +  Y    CG  + C+DP+A CV+       DDD ++     C D    GNG+C  D N EAC YDGGDCCECTC +     CG  +G+ C+DP+A
Sbjct:    5 GFDGGDCCECTCVSVYDDDYSCSSTDSGFACVDPTAPCVDDDDITIEQAL-----NC--FPREFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANSA-CIDPSAPCVDDDDV---TVDMVENCGYVGSVG------NGWCDEENNNEGCGYDGGD-CCECTCQPLDTDDGTDDYFQNGCGNGFACIDPNAPCVN-------DDDITLDIVENC-DSVAVGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACIDPEA 252          
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 5.050e-44
Identity = 121/295 (41.02%), Postives = 148/295 (50.17%), Query Frame = 1
Query:   73 IQDGHCDEINNVADCGWDGGDCCPCTCLDDLEHDCGVLTD------------FDCVDPDVPDECGATPSPAAAFGFPDCTGYMYDLEDGNCDEDLNNEECGYDGGDCCRCTCTD---DSGWECDR---------GSFDCKDPEAP--DDCETASPTPSPAASYGYPDCTGTMYLHQNGYCSDDLNNEECGYDGGDYCCTCTCQSS-SYTCGTY--YNCLDPDAECVDSTSAQTTDDDTSVCSDPSRRGNGYCSYDLNTEACEYDGGDCCECTCS--ETSEIACGVNGYNCLDPDA 864
            + DG+CD+ NN   CG+DGGDCC CTC+   +H      D            F C+DP  P  C        A    +C GY+  L DG C E+ NNE CGYDGGDCC CTC     D  W             G F C DP A   DD E          + G  +   T+ +  +GYC+ D NNE C YDGGD CC CTC+ + +  CG +  + C+DP A CVD  S   T D    C  P   GNG+C  D N E C YDGGDCCECTC   E  + AC  N + C+DP+A
Sbjct:   59 LGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAP--C-VEDDDITADMVENC-GYVRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDEV---------TVGMVESCDTVSIG-DGYCNMDNNNEACAYDGGD-CCECTCEDTPNNRCGRWSSFACIDPAAPCVDDDSF--TVDMIDNCEYPGGIGNGWCDVDNNNELCAYDGGDCCECTCESLEDDDWAC-RNNFACVDPNA 335          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8584.16742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX77_ECTSI1.040e-8451.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6K0_9PHAE2.380e-8451.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE4.120e-5940.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT4_9PHAE1.210e-5644.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEP6_ECTSI3.040e-5040.06Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7FX76_ECTSI3.480e-4842.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI1.280e-4744.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI6.230e-4539.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S4_ECTSI6.440e-4541.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE5.050e-4441.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8584contigS-dermatodea_contig8584:2433..4544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.2
Seed ortholog evalue1.9e-74
Seed eggNOG ortholog2880.D7FX77
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size961
Cds size960
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8584.16742.1prot_S-dermatodea_contig8584.16742.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8584 2433..4543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925353.2817254-CDS-S-dermatodea_contig8584:2432..27941622925353.2817254-CDS-S-dermatodea_contig8584:2432..2794Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8584 2433..2794 +
1694079876.0353467-CDS-S-dermatodea_contig8584:2432..27941694079876.0353467-CDS-S-dermatodea_contig8584:2432..2794Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8584 2433..2794 +
1622925353.2916195-CDS-S-dermatodea_contig8584:2988..32061622925353.2916195-CDS-S-dermatodea_contig8584:2988..3206Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8584 2989..3206 +
1694079876.048608-CDS-S-dermatodea_contig8584:2988..32061694079876.048608-CDS-S-dermatodea_contig8584:2988..3206Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8584 2989..3206 +
1622925353.3068697-CDS-S-dermatodea_contig8584:3848..40371622925353.3068697-CDS-S-dermatodea_contig8584:3848..4037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8584 3849..4037 +
1694079876.0598125-CDS-S-dermatodea_contig8584:3848..40371694079876.0598125-CDS-S-dermatodea_contig8584:3848..4037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8584 3849..4037 +
1622925353.3195689-CDS-S-dermatodea_contig8584:4352..45431622925353.3195689-CDS-S-dermatodea_contig8584:4352..4543Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8584 4353..4543 +
1694079876.068342-CDS-S-dermatodea_contig8584:4352..45431694079876.068342-CDS-S-dermatodea_contig8584:4352..4543Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8584 4353..4543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8584.16742.1

>prot_S-dermatodea_contig8584.16742.1 ID=prot_S-dermatodea_contig8584.16742.1|Name=mRNA_S-dermatodea_contig8584.16742.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=320bp
FWSGVSAQNVSSSDYPDCTGYAPYIQDGHCDEINNVADCGWDGGDCCPCT
CLDDLEHDCGVLTDFDCVDPDVPDECGATPSPAAAFGFPDCTGYMYDLED
GNCDEDLNNEECGYDGGDCCRCTCTDDSGWECDRGSFDCKDPEAPDDCET
ASPTPSPAASYGYPDCTGTMYLHQNGYCSDDLNNEECGYDGGDYCCTCTC
QSSSYTCGTYYNCLDPDAECVDSTSAQTTDDDTSVCSDPSRRGNGYCSYD
LNTEACEYDGGDCCECTCSETSEIACGVNGYNCLDPDACSSTTSSGSKTL
EADSSSDPSPFISDQLFPTG
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mRNA from alignment at S-dermatodea_contig8584:2433..4544+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8584.16742.1 ID=mRNA_S-dermatodea_contig8584.16742.1|Name=mRNA_S-dermatodea_contig8584.16742.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2112bp|location=Sequence derived from alignment at S-dermatodea_contig8584:2433..4544+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCTGGAGCGGCGTCTCTGCCCAGAACGTCTCGTCCTCCGATTACCCCGA TTGCACGGGATACGCGCCGTACATTCAGGACGGGCATTGCGATGAAATCA ACAATGTTGCAGATTGTGGCTGGGATGGAGGCGATTGCTGCCCTTGTACA TGTCTGGACGATCTTGAACATGACTGTGGCGTGCTCACTGACTTCGATTG TGTCGACCCCGACGTGCCGGATGAGTGCGGGGCAACGCCGAGCCCGGCTG CTGCCTTTGGATTCCCGGACTGCACGGGATACATGTACGATCTCGAAGAT GGCAACTGTGACGAAGACCTGAATAACGAAGAATGTGGCTACGACGGCGG TGATTGTTGCAGGTGAACATCCAAATGAGTGGTACGTGTCGTTATCGTGC GACAGAACGCTTGTGCAATGTAATGTAGCGTAAATACTTGAACACTGCAA AGGAAATATGCACATCAAACATGACGAAGGCGTCGAGACAAGTCAAACAG GATCGCCCTACTGTAGCTTCCCGAGATCCACGCTGTGTACATTGGCGTTG CTGCAGGTGCACTTGCACGGACGATTCCGGCTGGGAGTGCGACCGTGGCA GCTTCGATTGCAAAGACCCGGAAGCTCCCGACGATTGCGAAACGGCGAGT CCTACACCCAGCCCAGCGGCATCCTACGGATACCCGGACTGCACGGGGAC CATGTATCTTCACCAGAACGGTTATTGCTCGGACGATCTCAACAACGAAG AGTGTGGCTATGACGGGGGTGACTGTTGCAGGTCGGTGCTTCACCCAGCG ACGTGTACCTATATCGAGGGAGAAATCTGCTGGCACCCGATATAGGTAAA GCCGACAGGGTCCAAAGAAAGATGAATACTGTGCTTCGGTGTAGGTGATT CGTCCGAGCGGAACGCAAGCCGCCGGCGGGGTTCCCGTGTGGATGCTAAA GTTGAGCTATACATATACTCAGCAAATACTACATGATGGTTTCTTTTTTG TACGTACCCTGCAGGTGCACGTGCAGGACTTTGTCGACCTATGACAGTTA CACCCGGTGCTCGGGTTCTTTCGAATGCAAGGACCCGGAAGCTCCCCTCG ATTGCCCTACCCCAAGCCCAACCCCGAGCCCAGCTGCTTCCTATGGGTAC CCGGATTGCGAGGGATACCTTTACGATTTCCAAAACGGCAATTGTGACTA CGATTTGAACAACGCTGAGTGCGGTGAGCTGCACATGCCCATGAACCACA TCAGGGCCGATTGGGAGGGTTGAAACGGGGTAGCACGTCCGTAATTGCGG ATCCCATCTCGTGGAAACTTGCCTGATACCCCTTGACGCAGGAGTTTGGG ATTCAAAACTCACATCAACTAATGCTTGCACGATCCCGCCTTGCTTGGCA GGTTTCGACGGAGGAGATTGCTGCACCTGCACCTGCCAGTCGTCATCATA TACATGCGGCACTTACTATAACTGTCTAGATCCTGATGCTGAATGCGTGG ACTCAACCTCGGCCCAGACCACTGACGACGACACCAGCGTGTGCAGCGAC CCCAGTCGTCGCGGGAATGGCTATTGCAGCTACGACCTCAACACAGAAGC GTGTGGTAAGTCACGTCGTCTTCCATCTGTGTTGATAGTATATATAATTA TCGTCATCCACTTGCATATTTTGGCATCCAGGGTAGACGTTGTAGATAGT GAGTCCGCACAAGCAAATGTTAGTGTACGGAGAACTTTTCCCCTATATGG TTTGCCATCCCGTCCGCTCTTATTCTGTAGTGCTGGAATTCAAATCCCCC TATCTTGAGATGCCAAGGAATGTCAGACAAATGCAAGATGTGCCCACATC TCCGTCTACCTGCCATGAACCCTGGAGTCTTGCGCCGCCTGCACTTTCGC TGTCCGCAACGTTCCGGTAGAATACGACGGCGGGGATTGTTGCGAGTGCA CTTGCTCTGAGACGAGCGAAATCGCCTGCGGTGTTAATGGCTACAACTGC CTAGACCCGGACGCATGTAGTTCAACTACTAGCAGCGGCAGCAAGACATT GGAGGCGGATTCTTCTAGCGACCCGTCCCCTTTCATTTCGGACCAGCTGT TCCCAACGGGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8584:2433..4544+

>mRNA_S-dermatodea_contig8584.16742.1 ID=mRNA_S-dermatodea_contig8584.16742.1|Name=mRNA_S-dermatodea_contig8584.16742.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1920bp|location=Sequence derived from alignment at S-dermatodea_contig8584:2433..4544+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCTGGAGCGGCGTCTCTGCCCAGAACGTCTCGTCCTCCGATTACCCCGA
TTGCACGGGATACGCGCCGTACATTCAGGACGGGCATTGCGATGAAATCA
ACAATGTTGCAGATTGTGGCTGGGATGGAGGCGATTGCTGCCCTTGTACA
TGTCTGGACGATCTTGAACATGACTGTGGCGTGCTCACTGACTTCGATTG
TGTCGACCCCGACGTGCCGGATGAGTGCGGGGCAACGCCGAGCCCGGCTG
CTGCCTTTGGATTCCCGGACTGCACGGGATACATGTACGATCTCGAAGAT
GGCAACTGTGACGAAGACCTGAATAACGAAGAATGTGGCTACGACGGCGG
TGATTGTTGCAGTTCTGGAGCGGCGTCTCTGCCCAGAACGTCTCGTCCTC
CGATTACCCCGATTGCACGGGATACGCGCCGTACATTCAGGACGGGCATT
GCGATGAAATCAACAATGTTGCAGATTGTGGCTGGGATGGAGGCGATTGC
TGCCCTTGTACATGTCTGGACGATCTTGAACATGACTGTGGCGTGCTCAC
TGACTTCGATTGTGTCGACCCCGACGTGCCGGATGAGTGCGGGGCAACGC
CGAGCCCGGCTGCTGCCTTTGGATTCCCGGACTGCACGGGATACATGTAC
GATCTCGAAGATGGCAACTGTGACGAAGACCTGAATAACGAAGAATGTGG
CTACGACGGCGGTGATTGTTGCAGGTGCACTTGCACGGACGATTCCGGCT
GGGAGTGCGACCGTGGCAGCTTCGATTGCAAAGACCCGGAAGCTCCCGAC
GATTGCGAAACGGCGAGTCCTACACCCAGCCCAGCGGCATCCTACGGATA
CCCGGACTGCACGGGGACCATGTATCTTCACCAGAACGGTTATTGCTCGG
ACGATCTCAACAACGAAGAGTGTGGCTATGACGGGGGTGACTGTGCACTT
GCACGGACGATTCCGGCTGGGAGTGCGACCGTGGCAGCTTCGATTGCAAA
GACCCGGAAGCTCCCGACGATTGCGAAACGGCGAGTCCTACACCCAGCCC
AGCGGCATCCTACGGATACCCGGACTGCACGGGGACCATGTATCTTCACC
AGAACGGTTATTGCTCGGACGATCTCAACAACGAAGAGTGTGGCTATGAC
GGGGGTGACTATTGCTGCACCTGCACCTGCCAGTCGTCATCATATACATG
CGGCACTTACTATAACTGTCTAGATCCTGATGCTGAATGCGTGGACTCAA
CCTCGGCCCAGACCACTGACGACGACACCAGCGTGTGCAGCGACCCCAGT
CGTCGCGGGAATGGCTATTGCAGCTACGACCTCAACACAGAAGCGTGTGA
TTGCTGCACCTGCACCTGCCAGTCGTCATCATATACATGCGGCACTTACT
ATAACTGTCTAGATCCTGATGCTGAATGCGTGGACTCAACCTCGGCCCAG
ACCACTGACGACGACACCAGCGTGTGCAGCGACCCCAGTCGTCGCGGGAA
TGGCTATTGCAGCTACGACCTCAACACAGAAGCGTGTGAATACGACGGCG
GGGATTGTTGCGAGTGCACTTGCTCTGAGACGAGCGAAATCGCCTGCGGT
GTTAATGGCTACAACTGCCTAGACCCGGACGCATGTAGTTCAACTACTAG
CAGCGGCAGCAAGACATTGGAGGCGGATTCTTCTAGCGACCCGTCCCCTT
TCATTTCGGACCAGCTGTTCCCAACGGGCAATACGACGGCGGGGATTGTT
GCGAGTGCACTTGCTCTGAGACGAGCGAAATCGCCTGCGGTGTTAATGGC
TACAACTGCCTAGACCCGGACGCATGTAGTTCAACTACTAGCAGCGGCAG
CAAGACATTGGAGGCGGATTCTTCTAGCGACCCGTCCCCTTTCATTTCGG
ACCAGCTGTTCCCAACGGGC
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