mRNA_S-dermatodea_contig85829.16741.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85829.16741.1
Unique NamemRNA_S-dermatodea_contig85829.16741.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: D7FNT2_ECTSI (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT2_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.210e-18
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    1 GLEDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 132
            GLEDAPAS LYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV
Sbjct:  356 GLEDAPASTLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 399          
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: A0A1R2BRA4_9CILI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BRA4_9CILI)

HSP 1 Score: 55.5 bits (132), Expect = 1.160e-7
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 GLEDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILVSVV 141
            G +D  +  LY+ S+YW++TTL TVGYGDI A+ I ER YC +V ++
Sbjct:  220 GFQDYNSIDLYIVSLYWSITTLVTVGYGDISATNIPERCYCFVVMII 266          
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: A0A078ATG8_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078ATG8_STYLE)

HSP 1 Score: 54.3 bits (129), Expect = 2.990e-7
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    1 GLEDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILVSVV 141
            GL++AP S+ YV S+YWT+TT++TVGYGDI   T  ER   I + +V
Sbjct:  571 GLQNAPISECYVNSLYWTITTMATVGYGDIKPQTTQERLIVIFIMLV 617          
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: A0A1R2D1U6_9CILI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2D1U6_9CILI)

HSP 1 Score: 53.5 bits (127), Expect = 5.580e-7
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    7 EDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILVSVV 141
            +D  +  LY+ S+YW++TTL TVGYGDI A+ I ER YC +V ++
Sbjct:  221 QDYNSIDLYIVSLYWSITTLVTVGYGDISATNIPERCYCFIVMII 265          
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: A0A1R2AXL4_9CILI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AXL4_9CILI)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-6
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    1 GLEDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 132
            G+E+     LY  S+YWTVTTL+TVGYGDI  +  AER  CI+V
Sbjct:  276 GIENYSIFNLYTASLYWTVTTLATVGYGDIVPANSAERGICIIV 319          
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: A0A7S3MSG3_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3MSG3_9CILI)

HSP 1 Score: 52.0 bits (123), Expect = 1.950e-6
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1
Query:    7 EDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAER 114
            +D  A  LY+TSVYW +TTLSTVGYGDI AST  E+
Sbjct:  154 QDEAAGNLYITSVYWAITTLSTVGYGDISASTPFEK 189          
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: A0A8J8T9J8_HALGN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T9J8_HALGN)

HSP 1 Score: 51.6 bits (122), Expect = 2.670e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 GLEDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILVSVV 141
            G ED P  +LY+ + Y+TVTT+ TVGYGDI A ++ ER  CI + ++
Sbjct:  182 GFEDLPDYELYIVAFYFTVTTIMTVGYGDITAKSVPERILCIFLMLI 228          
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: A0A835YFL6_9CHLO (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YFL6_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 2.670e-6
Identity = 20/37 (54.05%), Postives = 31/37 (83.78%), Query Frame = 1
Query:   31 YVTSVYWTVTTLSTVGYGDIFASTIAERTYCILVSVV 141
            Y+TS+YW  TT++TVGYGDI+ +TIAE+ +C++  V+
Sbjct:  380 YITSMYWAYTTMTTVGYGDIYGTTIAEKVWCMVTMVI 416          
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: A0A1R2CJM9_9CILI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CJM9_9CILI)

HSP 1 Score: 50.8 bits (120), Expect = 5.000e-6
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    7 EDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILVSV 138
            +D     LY+ S+YW +TTL TVGYGDI A+  AER YC  V V
Sbjct:  223 QDYDNLDLYIVSMYWAITTLVTVGYGDISATNTAERCYCFAVMV 266          
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Match: A0A1R2BXI8_9CILI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BXI8_9CILI)

HSP 1 Score: 50.8 bits (120), Expect = 5.000e-6
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    1 GLEDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILV 132
            G +D   ++LY+ S+YWT+TT +TVGYGDI AS + E+ + + V
Sbjct:  228 GFQDLGNTQLYIVSIYWTITTFATVGYGDIVASNLDEKFFTVTV 271          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85829.16741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT2_ECTSI1.210e-1897.73Cyclic nucleotide-binding domain-containing protei... [more]
A0A1R2BRA4_9CILI1.160e-751.06Cyclic nucleotide-binding domain-containing protei... [more]
A0A078ATG8_STYLE2.990e-753.19Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
A0A1R2D1U6_9CILI5.580e-751.11Cyclic nucleotide-binding domain-containing protei... [more]
A0A1R2AXL4_9CILI1.430e-656.82Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3MSG3_9CILI1.950e-666.67Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
A0A8J8T9J8_HALGN2.670e-648.94Cyclic nucleotide-binding domain-containing protei... [more]
A0A835YFL6_9CHLO2.670e-654.05Cyclic nucleotide-binding domain-containing protei... [more]
A0A1R2CJM9_9CILI5.000e-654.55Cyclic nucleotide-binding domain-containing protei... [more]
A0A1R2BXI8_9CILI5.000e-647.73Cyclic nucleotide-binding domain-containing protei... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85829contigS-dermatodea_contig85829:283..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue6.7e-16
Seed eggNOG ortholog2880.D7FNT2
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925353.2107768-CDS-S-dermatodea_contig85829:282..4261622925353.2107768-CDS-S-dermatodea_contig85829:282..426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85829 283..426 +
1694079876.0110626-CDS-S-dermatodea_contig85829:282..4261694079876.0110626-CDS-S-dermatodea_contig85829:282..426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85829 283..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85829.16741.1prot_S-dermatodea_contig85829.16741.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85829 283..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85829.16741.1

>prot_S-dermatodea_contig85829.16741.1 ID=prot_S-dermatodea_contig85829.16741.1|Name=mRNA_S-dermatodea_contig85829.16741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=48bp
GLEDAPASKLYVTSVYWTVTTLSTVGYGDIFASTIAERTYCILVSVV*
back to top

mRNA from alignment at S-dermatodea_contig85829:283..426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85829.16741.1 ID=mRNA_S-dermatodea_contig85829.16741.1|Name=mRNA_S-dermatodea_contig85829.16741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at S-dermatodea_contig85829:283..426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTTGGAAGACGCGCCAGCTTCTAAGCTGTACGTGACTTCGGTTTACTG GACCGTGACGACCCTGTCAACCGTAGGCTACGGTGACATCTTTGCCAGCA CCATCGCGGAAAGGACCTACTGTATCCTCGTGAGTGTAGTGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig85829:283..426+

>mRNA_S-dermatodea_contig85829.16741.1 ID=mRNA_S-dermatodea_contig85829.16741.1|Name=mRNA_S-dermatodea_contig85829.16741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig85829:283..426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTTGGAAGACGCGCCAGCTTCTAAGCTGTACGTGACTTCGGTTTACTG
GACCGTGACGACCCTGTCAACCGTAGGCTACGGTGACATCTTTGCCAGCA
CCATCGCGGAAAGGACCTACTGTATCCTCGTGAGTGTAGTGTGAGGGTTG
GAAGACGCGCCAGCTTCTAAGCTGTACGTGACTTCGGTTTACTGGACCGT
GACGACCCTGTCAACCGTAGGCTACGGTGACATCTTTGCCAGCACCATCG
CGGAAAGGACCTACTGTATCCTCGTGAGTGTAGTGTGA
back to top