mRNA_S-dermatodea_contig85794.16738.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85794.16738.1
Unique NamemRNA_S-dermatodea_contig85794.16738.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 1.240e-76
Identity = 115/144 (79.86%), Postives = 128/144 (88.89%), Query Frame = 1
Query:    1 MSAAGSASQVAKRKNFNDSEKDEVIRFLLAGSTKGVLQHGAYKGAAEKFGCCWETIKRLWRRYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHSNALKPYLT 432
            MSAAGSASQVAKRKNFN+SEK+EVIR LL GS  GVL +GA+K AAEKFGC WET KRLWRRYD QH+AGV+SP+L   R G SGRKG+P+EEL+ RLRDIPLNDRTTQRRLAAAL +PLTTLH+NLKALGLRAHSNA+KPYLT
Sbjct:    1 MSAAGSASQVAKRKNFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAHSNAIKPYLT 144          
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A6H5KHK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK2_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.390e-68
Identity = 108/144 (75.00%), Postives = 123/144 (85.42%), Query Frame = 1
Query:    1 MSAAGSASQVAKRKNFNDSEKDEVIRFLLAGSTKGVLQHGAYKGAAEKFGCCWETIKRLWRRYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHSNAL-KPYL 429
            M AAGSASQVAKRKNFN+ E +EVIR+LL GS  GVL++GA+K A EKFG  WETIKRLW RYD QH+AGVASP++   R+G SGR+GIPLEEL+ R RDIPLN+RTTQRRLAAAL +P +TLHRNLKALGLRAHSNAL KPYL
Sbjct:    1 MPAAGSASQVAKRKNFNEEETEEVIRYLLPGSKNGVLRYGAFKEAGEKFGWYWETIKRLWMRYDTQHKAGVASPQIDNRRKGNSGRQGIPLEELKERPRDIPLNERTTQRRLAAALVIPKSTLHRNLKALGLRAHSNALIKPYL 144          
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A6H5KRW0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.860e-54
Identity = 89/136 (65.44%), Postives = 110/136 (80.88%), Query Frame = 1
Query:    1 MSAAGSASQVAKRKNFNDSEKDEVIRFLLAGSTKGVLQHGAYKGAAEKFGCCWETIKRLWRRYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHS 408
            MSAAGSASQ  KRKNFN SE++EV+R+LLA S  GV QHG+Y  AAEK+GC WETIKR+W++++ + E+G  S  +   R+G SG KGI +E L+ARL +IPLN+RTTQRRLAAALG+P +TLH NLKALGLRAHS
Sbjct:    1 MSAAGSASQGLKRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRAHS 136          
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A6H5K5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 2.090e-53
Identity = 88/138 (63.77%), Postives = 108/138 (78.26%), Query Frame = 1
Query:    1 MSAAGSASQVAKRKNFNDSEKDEVIRFLLAGSTKGVLQHGAYKGAAEKFGCCWETIKRLWRRYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHSNA 414
            MSAAGSASQ  KRKNFN  E++EVIR LLA S  GVL+HGAY+ AAEK+GC W+TIK +W +++ +  AG  S  +   R+G SGRKGI LE+L+ RLRDIPLN+RTTQRRLAAALG+P  TL RNL+ LGL+AH +A
Sbjct:    1 MSAAGSASQGTKRKNFNALEREEVIRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLEKLGLKAHYSA 138          
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A6H5KLV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 8.460e-51
Identity = 87/134 (64.93%), Postives = 108/134 (80.60%), Query Frame = 1
Query:    1 MSAAGSASQVAKRKNFNDSEKDEVIRFLLAGSTKGVLQHGAYKGAAEKFGCCWETIKRLWRRYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRA 402
            MSAAGSASQ  KRKNFN SE++EV+R+LLA S  GV QHG+Y  AAEK+GC WETIKR+W++++ + E+G  S  +   R+G SG KGI +E L+ARL +IPLN+RTTQRRLAAALG+P +TLH NLKALGLRA
Sbjct:    1 MSAAGSASQGLKRKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRA 134          
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A6H5JEL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.320e-36
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query:  184 RYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHSNALKP 423
            RYD QH+AGVASP++   R+G SGRKGIPLEEL+ RLRDIPLNDRTTQRRLAAALG+P +TLHRNLK LGLRAHSNALKP
Sbjct:    2 RYDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALGIPKSTLHRNLKVLGLRAHSNALKP 81          
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.260e-35
Identity = 65/89 (73.03%), Postives = 73/89 (82.02%), Query Frame = 1
Query:  166 IKRLWRRYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHSNALKPYLT 432
             KRLW RY+ Q +AGVA PK+   R+G SGRKGIP++EL+ RLRDIPLNDRTTQRRLAAALG+  TTL  NLKALGLRAHS ALKP LT
Sbjct:   17 FKRLWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLRAHSKALKPLLT 105          
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A6H5JAZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.910e-35
Identity = 66/82 (80.49%), Postives = 71/82 (86.59%), Query Frame = 1
Query:  184 RYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHSNALKPYL 429
            RY  QH+AGVASPK+   R G SGRKGIPLEEL+ RLRDIPLN RTTQRRLAAALG+P +TLHRN KALGLRAHSNALKPYL
Sbjct:    2 RYYTQHKAGVASPKIENRRMGNSGRKGIPLEELRERLRDIPLN-RTTQRRLAAALGIPKSTLHRNPKALGLRAHSNALKPYL 82          
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.280e-21
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query:   70 VIRFLLAGSTKGVLQHGAYKGAAEKFGCCWETIKRLWRRYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHSNALKPYLT 432
            ++  LL GS  G L HG  K     +    +T+ + W+ Y+ + EAG   P L   R+G SG+KG+ +  L+  L+DI L +RTT R +AAALG+P +TL  NL  LGLR+ S  LKP L+
Sbjct:    1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLS 121          
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Match: A0A225WYZ1_9STRA (Mariner Transposase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WYZ1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.390e-14
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   37 RKNFNDSEKDEVIRFLLAGSTKGVLQHGAYKGAAEKFGCCWETIKRLWRRYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRDIPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHSNALKPYL 429
            + + +DS +  ++  LL  ST G L  GA   AA KF     T+ R+W RY+    AG  S  +++  +G SGRKG    EL A++R +P+  RT  R+ A +LG+ +  +   +    +   +  +KP L
Sbjct:    3 KSSLDDSTRRAILLHLLIASTGGELPRGAKTSAATKFNVHRHTVDRIWSRYNDSVAAGDLSGDVSSRYKGNSGRKGYDRVELAAKIRSVPVEQRTNYRQTAKSLGLSVGLIFNMMTNKEMVKRTTTIKPIL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85794.16738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9I0_9PHAE1.240e-7679.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHK2_9PHAE1.390e-6875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRW0_9PHAE3.860e-5465.44Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M0_9PHAE2.090e-5363.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV4_9PHAE8.460e-5164.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEL2_9PHAE3.320e-3681.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBK8_9PHAE2.260e-3573.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAZ0_9PHAE4.910e-3580.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD91_9PHAE1.280e-2142.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225WYZ1_9STRA4.390e-1432.06Mariner Transposase n=1 Tax=Phytophthora megakarya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85794contigS-dermatodea_contig85794:15..446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog67593.Physo134546
EggNOG OGs2CZ3T@1,2S88G@2759,3QCT3@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925352.8777862-CDS-S-dermatodea_contig85794:14..4461622925352.8777862-CDS-S-dermatodea_contig85794:14..446Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85794 15..446 -
1694079875.8104541-CDS-S-dermatodea_contig85794:14..4461694079875.8104541-CDS-S-dermatodea_contig85794:14..446Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85794 15..446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85794.16738.1prot_S-dermatodea_contig85794.16738.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85794 15..446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85794.16738.1

>prot_S-dermatodea_contig85794.16738.1 ID=prot_S-dermatodea_contig85794.16738.1|Name=mRNA_S-dermatodea_contig85794.16738.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=144bp
MSAAGSASQVAKRKNFNDSEKDEVIRFLLAGSTKGVLQHGAYKGAAEKFG
CCWETIKRLWRRYDVQHEAGVASPKLTTGRRGKSGRKGIPLEELQARLRD
IPLNDRTTQRRLAAALGVPLTTLHRNLKALGLRAHSNALKPYLT
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mRNA from alignment at S-dermatodea_contig85794:15..446-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85794.16738.1 ID=mRNA_S-dermatodea_contig85794.16738.1|Name=mRNA_S-dermatodea_contig85794.16738.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig85794:15..446- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGCTGCTGGGAGTGCCTCCCAGGTGGCAAAACGCAAGAATTTCAA CGATTCCGAAAAAGATGAGGTGATTCGGTTCCTGCTTGCTGGTAGCACAA AAGGGGTTCTGCAGCACGGCGCGTACAAGGGAGCCGCGGAGAAGTTTGGG TGCTGCTGGGAGACGATTAAGAGGTTGTGGAGGAGGTACGATGTGCAGCA CGAAGCAGGGGTCGCCAGCCCAAAGCTGACGACCGGTCGCAGGGGGAAAA GCGGCCGGAAGGGCATTCCCTTAGAAGAGCTGCAGGCGCGCCTCCGTGAC ATCCCGCTGAACGACCGCACCACACAGCGCCGCCTGGCTGCAGCGCTTGG GGTTCCTCTCACTACGCTGCACCGTAACCTCAAAGCGCTTGGATTGAGGG CACACTCAAACGCGCTCAAGCCGTATCTCACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig85794:15..446-

>mRNA_S-dermatodea_contig85794.16738.1 ID=mRNA_S-dermatodea_contig85794.16738.1|Name=mRNA_S-dermatodea_contig85794.16738.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at S-dermatodea_contig85794:15..446- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGGCTGCTGGGAGTGCCTCCCAGGTGGCAAAACGCAAGAATTTCAA
CGATTCCGAAAAAGATGAGGTGATTCGGTTCCTGCTTGCTGGTAGCACAA
AAGGGGTTCTGCAGCACGGCGCGTACAAGGGAGCCGCGGAGAAGTTTGGG
TGCTGCTGGGAGACGATTAAGAGGTTGTGGAGGAGGTACGATGTGCAGCA
CGAAGCAGGGGTCGCCAGCCCAAAGCTGACGACCGGTCGCAGGGGGAAAA
GCGGCCGGAAGGGCATTCCCTTAGAAGAGCTGCAGGCGCGCCTCCGTGAC
ATCCCGCTGAACGACCGCACCACACAGCGCCGCCTGGCTGCAGCGCTTGG
GGTTCCTCTCACTACGCTGCACCGTAACCTCAAAGCGCTTGGATTGAGGG
CACACTCAAACGCGCTCAAGCCGTATCTCACCATGTCGGCTGCTGGGAGT
GCCTCCCAGGTGGCAAAACGCAAGAATTTCAACGATTCCGAAAAAGATGA
GGTGATTCGGTTCCTGCTTGCTGGTAGCACAAAAGGGGTTCTGCAGCACG
GCGCGTACAAGGGAGCCGCGGAGAAGTTTGGGTGCTGCTGGGAGACGATT
AAGAGGTTGTGGAGGAGGTACGATGTGCAGCACGAAGCAGGGGTCGCCAG
CCCAAAGCTGACGACCGGTCGCAGGGGGAAAAGCGGCCGGAAGGGCATTC
CCTTAGAAGAGCTGCAGGCGCGCCTCCGTGACATCCCGCTGAACGACCGC
ACCACACAGCGCCGCCTGGCTGCAGCGCTTGGGGTTCCTCTCACTACGCT
GCACCGTAACCTCAAAGCGCTTGGATTGAGGGCACACTCAAACGCGCTCA
AGCCGTATCTCACC
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