prot_S-dermatodea_contig85748.16733.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig85748.16733.1
Unique Nameprot_S-dermatodea_contig85748.16733.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length41
Homology
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A076MD99_9VIRU (PsaC (Fragment) n=38 Tax=uncultured phage TaxID=278008 RepID=A0A076MD99_9VIRU)

HSP 1 Score: 83.2 bits (204), Expect = 2.300e-20
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            +PR+EDCVGCKRCETACPTDFLSIRVYL AETTRSMGLAY
Sbjct:    9 SPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY 48          
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A076MJF2_9VIRU (PsaC (Fragment) n=1 Tax=uncultured phage TaxID=278008 RepID=A0A076MJF2_9VIRU)

HSP 1 Score: 82.8 bits (203), Expect = 3.340e-20
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            +PR+EDCVGCKRCETACPTDFLSIRVYL AETTRSMGLAY
Sbjct:   10 SPRTEDCVGCKRCETACPTDFLSIRVYLRAETTRSMGLAY 49          
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: UPI001B8AF93F (photosystem I iron-sulfur center protein PsaC n=1 Tax=Leptolyngbya sp. 7M TaxID=2812896 RepID=UPI001B8AF93F)

HSP 1 Score: 83.2 bits (204), Expect = 5.160e-20
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            +PR+EDCVGCKRCETACPTDFLSIRVYL AETTRSMGLAY
Sbjct:   41 SPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY 80          
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: UPI001985260A (Photosystem I iron-sulfur center protein PsaC n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI001985260A)

HSP 1 Score: 82.0 bits (201), Expect = 8.560e-20
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            +PR+EDCVGCKRCETACPTD+LSIRVYL AETTRSMGLAY
Sbjct:   20 SPRTEDCVGCKRCETACPTDYLSIRVYLGAETTRSMGLAY 59          
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A1Z1XBA0_9RHOD (Photosystem I iron-sulfur center n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A1Z1XBA0_9RHOD)

HSP 1 Score: 82.8 bits (203), Expect = 1.730e-19
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            APR+EDC+GCKRCETACPTDFLSIRVYL AETTRS+GLAY
Sbjct:   73 APRTEDCIGCKRCETACPTDFLSIRVYLGAETTRSLGLAY 112          
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A076MEQ3_9VIRU (PsaC (Fragment) n=5 Tax=uncultured phage TaxID=278008 RepID=A0A076MEQ3_9VIRU)

HSP 1 Score: 80.9 bits (198), Expect = 1.980e-19
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            +PR+EDCVGCKRCETACPTDFLSIRVYL  ETTRSMGLAY
Sbjct:   11 SPRTEDCVGCKRCETACPTDFLSIRVYLGDETTRSMGLAY 50          
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A4Q3DHR3_9RICK (Photosystem I iron-sulfur center protein PsaC (Fragment) n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A4Q3DHR3_9RICK)

HSP 1 Score: 80.5 bits (197), Expect = 2.690e-19
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            APR+EDCVGCKRCE+ACPTDFLS+RVY+ +ETTRSMGLAY
Sbjct:    9 APRTEDCVGCKRCESACPTDFLSVRVYMGSETTRSMGLAY 48          
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A396I272_MEDTR (Photosystem I iron-sulfur center n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396I272_MEDTR)

HSP 1 Score: 80.5 bits (197), Expect = 4.750e-19
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            APR+EDCVGCKRCE+ACPTDFLS+RVYL  ETTRSMGLAY
Sbjct:   32 APRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMGLAY 71          
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A0A2A182_PROMR (Photosystem I iron-sulfur center n=19 Tax=root TaxID=1 RepID=A0A0A2A182_PROMR)

HSP 1 Score: 79.3 bits (194), Expect = 1.140e-18
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            +PR+EDCVGCKRCETACPTDFLSIRVYL  ET+RSMGLAY
Sbjct:   25 SPRTEDCVGCKRCETACPTDFLSIRVYLGDETSRSMGLAY 64          
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A816J543_BRANA (Photosystem I iron-sulfur center n=3 Tax=Brassica TaxID=3705 RepID=A0A816J543_BRANA)

HSP 1 Score: 79.0 bits (193), Expect = 1.790e-18
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 40
            APR+EDCVGCKRCE+ACPTDFLS+RVYL  ETTRSMGLAY
Sbjct:   29 APRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 68          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A076MD99_9VIRU2.300e-2092.50PsaC (Fragment) n=38 Tax=uncultured phage TaxID=27... [more]
A0A076MJF2_9VIRU3.340e-2092.50PsaC (Fragment) n=1 Tax=uncultured phage TaxID=278... [more]
UPI001B8AF93F5.160e-2092.50photosystem I iron-sulfur center protein PsaC n=1 ... [more]
UPI001985260A8.560e-2090.00Photosystem I iron-sulfur center protein PsaC n=1 ... [more]
A0A1Z1XBA0_9RHOD1.730e-1990.00Photosystem I iron-sulfur center n=1 Tax=Compsopog... [more]
A0A076MEQ3_9VIRU1.980e-1990.00PsaC (Fragment) n=5 Tax=uncultured phage TaxID=278... [more]
A0A4Q3DHR3_9RICK2.690e-1985.00Photosystem I iron-sulfur center protein PsaC (Fra... [more]
A0A396I272_MEDTR4.750e-1987.50Photosystem I iron-sulfur center n=1 Tax=Medicago ... [more]
A0A0A2A182_PROMR1.140e-1887.50Photosystem I iron-sulfur center n=19 Tax=root Tax... [more]
A0A816J543_BRANA1.790e-1887.50Photosystem I iron-sulfur center n=3 Tax=Brassica ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPFAMPF00037Fer4coord: 5..22
e-value: 2.5E-7
score: 30.2
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 1..27
score: 8.869
NoneNo IPR availableGENE3D3.30.70.20coord: 1..40
e-value: 2.6E-15
score: 57.7
NoneNo IPR availablePANTHERPTHR24960:SF66coord: 1..40
NoneNo IPR availablePANTHERPTHR24960FAMILY NOT NAMEDcoord: 1..40
NoneNo IPR availableSUPERFAMILY548624Fe-4S ferredoxinscoord: 5..27
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 7..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85748contigS-dermatodea_contig85748:2..124 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85748.16733.1mRNA_S-dermatodea_contig85748.16733.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig85748 2..124 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig85748.16733.1 ID=prot_S-dermatodea_contig85748.16733.1|Name=mRNA_S-dermatodea_contig85748.16733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=41bp
APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0178964Fe4S_Fe-S-bd
IPR0179004Fe4S_Fe_S_CS