mRNA_S-dermatodea_contig85748.16733.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85748.16733.1
Unique NamemRNA_S-dermatodea_contig85748.16733.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A076MD99_9VIRU (PsaC (Fragment) n=38 Tax=uncultured phage TaxID=278008 RepID=A0A076MD99_9VIRU)

HSP 1 Score: 83.2 bits (204), Expect = 2.300e-20
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            +PR+EDCVGCKRCETACPTDFLSIRVYL AETTRSMGLAY
Sbjct:    9 SPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY 48
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A076MJF2_9VIRU (PsaC (Fragment) n=1 Tax=uncultured phage TaxID=278008 RepID=A0A076MJF2_9VIRU)

HSP 1 Score: 82.8 bits (203), Expect = 3.340e-20
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            +PR+EDCVGCKRCETACPTDFLSIRVYL AETTRSMGLAY
Sbjct:   10 SPRTEDCVGCKRCETACPTDFLSIRVYLRAETTRSMGLAY 49
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: UPI001B8AF93F (photosystem I iron-sulfur center protein PsaC n=1 Tax=Leptolyngbya sp. 7M TaxID=2812896 RepID=UPI001B8AF93F)

HSP 1 Score: 83.2 bits (204), Expect = 5.160e-20
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            +PR+EDCVGCKRCETACPTDFLSIRVYL AETTRSMGLAY
Sbjct:   41 SPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY 80
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: UPI001985260A (Photosystem I iron-sulfur center protein PsaC n=1 Tax=Gloeobacterales cyanobacterium ES-bin-141 TaxID=2812628 RepID=UPI001985260A)

HSP 1 Score: 82.0 bits (201), Expect = 8.560e-20
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            +PR+EDCVGCKRCETACPTD+LSIRVYL AETTRSMGLAY
Sbjct:   20 SPRTEDCVGCKRCETACPTDYLSIRVYLGAETTRSMGLAY 59
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A1Z1XBA0_9RHOD (Photosystem I iron-sulfur center n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A1Z1XBA0_9RHOD)

HSP 1 Score: 82.8 bits (203), Expect = 1.730e-19
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            APR+EDC+GCKRCETACPTDFLSIRVYL AETTRS+GLAY
Sbjct:   73 APRTEDCIGCKRCETACPTDFLSIRVYLGAETTRSLGLAY 112
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A076MEQ3_9VIRU (PsaC (Fragment) n=5 Tax=uncultured phage TaxID=278008 RepID=A0A076MEQ3_9VIRU)

HSP 1 Score: 80.9 bits (198), Expect = 1.980e-19
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            +PR+EDCVGCKRCETACPTDFLSIRVYL  ETTRSMGLAY
Sbjct:   11 SPRTEDCVGCKRCETACPTDFLSIRVYLGDETTRSMGLAY 50
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A4Q3DHR3_9RICK (Photosystem I iron-sulfur center protein PsaC (Fragment) n=1 Tax=Rickettsiaceae bacterium TaxID=2023360 RepID=A0A4Q3DHR3_9RICK)

HSP 1 Score: 80.5 bits (197), Expect = 2.690e-19
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            APR+EDCVGCKRCE+ACPTDFLS+RVY+ +ETTRSMGLAY
Sbjct:    9 APRTEDCVGCKRCESACPTDFLSVRVYMGSETTRSMGLAY 48
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A396I272_MEDTR (Photosystem I iron-sulfur center n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396I272_MEDTR)

HSP 1 Score: 80.5 bits (197), Expect = 4.750e-19
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            APR+EDCVGCKRCE+ACPTDFLS+RVYL  ETTRSMGLAY
Sbjct:   32 APRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMGLAY 71
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A0A2A182_PROMR (Photosystem I iron-sulfur center n=19 Tax=root TaxID=1 RepID=A0A0A2A182_PROMR)

HSP 1 Score: 79.3 bits (194), Expect = 1.140e-18
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            +PR+EDCVGCKRCETACPTDFLSIRVYL  ET+RSMGLAY
Sbjct:   25 SPRTEDCVGCKRCETACPTDFLSIRVYLGDETSRSMGLAY 64
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BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Match: A0A816J543_BRANA (Photosystem I iron-sulfur center n=3 Tax=Brassica TaxID=3705 RepID=A0A816J543_BRANA)

HSP 1 Score: 79.0 bits (193), Expect = 1.790e-18
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY 120
            APR+EDCVGCKRCE+ACPTDFLS+RVYL  ETTRSMGLAY
Sbjct:   29 APRTEDCVGCKRCESACPTDFLSVRVYLWHETTRSMGLAY 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85748.16733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A076MD99_9VIRU2.300e-2092.50PsaC (Fragment) n=38 Tax=uncultured phage TaxID=27... [more]
A0A076MJF2_9VIRU3.340e-2092.50PsaC (Fragment) n=1 Tax=uncultured phage TaxID=278... [more]
UPI001B8AF93F5.160e-2092.50photosystem I iron-sulfur center protein PsaC n=1 ... [more]
UPI001985260A8.560e-2090.00Photosystem I iron-sulfur center protein PsaC n=1 ... [more]
A0A1Z1XBA0_9RHOD1.730e-1990.00Photosystem I iron-sulfur center n=1 Tax=Compsopog... [more]
A0A076MEQ3_9VIRU1.980e-1990.00PsaC (Fragment) n=5 Tax=uncultured phage TaxID=278... [more]
A0A4Q3DHR3_9RICK2.690e-1985.00Photosystem I iron-sulfur center protein PsaC (Fra... [more]
A0A396I272_MEDTR4.750e-1987.50Photosystem I iron-sulfur center n=1 Tax=Medicago ... [more]
A0A0A2A182_PROMR1.140e-1887.50Photosystem I iron-sulfur center n=19 Tax=root Tax... [more]
A0A816J543_BRANA1.790e-1887.50Photosystem I iron-sulfur center n=3 Tax=Brassica ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85748contigS-dermatodea_contig85748:2..124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.2
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog1165094.RINTHH_13640
Preferred namepsaC
KEGG rclassRC00197,RC00323
KEGG koko:K00205,ko:K02573,ko:K02691
KEGG ReactionR03015,R08060,R11743
KEGG Pathwayko00195,ko00680,ko01100,ko01120,ko01200,map00195,map00680,map01100,map01120,map01200
KEGG ModuleM00163,M00567
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0009579,GO:0016020,GO:0034357,GO:0042651,GO:0044424,GO:0044436,GO:0044464,GO:0071944
EggNOG free text desc.essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA B D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin cytochrome c6- ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn
EggNOG OGs1G6I8@1117,1HNWK@1161,COG1143@1,COG1143@2
COG Functional cat.C
BiGG ReactioniJN678.psaC
Best tax levelNostocales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925352.5574315-CDS-S-dermatodea_contig85748:1..1241622925352.5574315-CDS-S-dermatodea_contig85748:1..124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85748 2..124 +
1694079875.613801-CDS-S-dermatodea_contig85748:1..1241694079875.613801-CDS-S-dermatodea_contig85748:1..124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85748 2..124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85748.16733.1prot_S-dermatodea_contig85748.16733.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85748 2..124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85748.16733.1

>prot_S-dermatodea_contig85748.16733.1 ID=prot_S-dermatodea_contig85748.16733.1|Name=mRNA_S-dermatodea_contig85748.16733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=41bp
APRSEDCVGCKRCETACPTDFLSIRVYLAAETTRSMGLAY*
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mRNA from alignment at S-dermatodea_contig85748:2..124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85748.16733.1 ID=mRNA_S-dermatodea_contig85748.16733.1|Name=mRNA_S-dermatodea_contig85748.16733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at S-dermatodea_contig85748:2..124+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCCTCGTTCAGAAGATTGTGTTGGATGTAAACGTTGTGAAACCGCTTG
TCCAACCGATTTTCTAAGTATTCGTGTTTATCTTGCTGCAGAAACGACTC
GTAGTATGGGATTAGCCTATTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig85748:2..124+

>mRNA_S-dermatodea_contig85748.16733.1 ID=mRNA_S-dermatodea_contig85748.16733.1|Name=mRNA_S-dermatodea_contig85748.16733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at S-dermatodea_contig85748:2..124+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTCCTCGTTCAGAAGATTGTGTTGGATGTAAACGTTGTGAAACCGCTTG
TCCAACCGATTTTCTAAGTATTCGTGTTTATCTTGCTGCAGAAACGACTC
GTAGTATGGGATTAGCCTATTAAGCTCCTCGTTCAGAAGATTGTGTTGGA
TGTAAACGTTGTGAAACCGCTTGTCCAACCGATTTTCTAAGTATTCGTGT
TTATCTTGCTGCAGAAACGACTCGTAGTATGGGATTAGCCTATTAA
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